ISMae4
- Family IS5
- Group ISL2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AJ577140 | ND | Microcystis aeruginosa | Microcystis aeruginosa NIES-843 Microcystis aeruginosa PCC 9354 |
DNA section
IS Length : 1218 bp
Ends
IR Length : 25/32
IRL : AGACCTCTTGCATAATTTTTTTATGGTATAATATAAGGTTTTGCTTTTTT
IRR : AGAACTCTTGCAAATTAATTATATGTTATAATGATGGGTTAACTAATTTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTAGTGGAT | ATT | GATAGCTTAA | 3 |
TTATCAACTC | TTT | CAATCTTTCC | 3 |
GGTGTCTATA | ATT | CTATGATGGG | 3 |
TGGTTGTTTA | AAT | GAGTTAGGCT | 3 |
TTTTAGGAAT | ATT | GATTAGTTTA | 3 |
CAGGGATTTT | AAT | ATTATTCTGG | 3 |
TTTCAACTAT | ATT | GTCAAAGAAA | 3 |
GAGTTTTTAG | TTT | ATTGTTTACT | 3 |
GTGCGGATAT | ATT | GTAAACTATC | 3 |
TAAATAATTA | ACT | GAAAGTCCCT | 3 |
GAAATCTAAT | AAT | AATTAGGAGT | 3 |
AGGAAAAAAT | AAT | GAGAGAATTT | 3 |
GTTAGACTGC | AAT | ATCGTGAGGT | 3 |
ATACTCGTTA | ATT | GTAGTTAAAA | 3 |
AAATTGTTTT | ATT | CAAGATTGCC | 3 |
ATAACAATAC | TTT | TAAGTCCTAA | 3 |
GGCGTTAAAA | ATT | ATCAAATGCC | 3 |
CGATTTGGAT | ACT | CAACTGCTAA | 3 |
GGAGATGTCT | ATT | GATTACTAGC | 3 |
TGTACTCAAT | AAT | AAAGGTGTTC | 3 |
AAGGTAGATC | AGA | CAGTGATGCA | 3 |
GCCCTCCAAT | AAT | GTTGCTTGTG | 3 |
TCTATCTTTC | TCT | AAAAAAATGG | 3 |
CAAAAAAGAG | ATA | TAAAAAAACA | 3 |
GGCTAAGTAT | AATATTTGCC | 0 | |
TCTTTTCAAA | AATAATGGTC | 0 |
DNA sequence
AGACCTCTTGCATAATTTTTTTATGGTATAATATAAGGTTTTGCTTTTTTCTCAATTCTTAGATTGAAGTGGAAAAAAGAATAAAATGTGATCTTAGGTC
AGGAAATCATCTATAATTTTGCTATGTTTATTAGCAAAATTATGGATTATCAAAACTTATCAGATGAACAATTCAAACGCCGTTTCGGTGTGTATAAACA
AACATATAGAAAGATGGTAGAATCAGTAAAAAGTGTTGAAGCCGACTCTAATTCACCATCTAAAAGGGGACCGAAACCTAAACTATCTATAGAAGAACAA
GTTTTAGTAACGTTAGAATATTGGCGAGAATATAGAACATATTTTCACATTGGTACAAGCTGGGAACTATCAGAATCAACTATATGTCGGATTGTAAATA
AGACGGAAAAAATGCTTTTACAATCGGGAAACTTCCGTTTAAAAGGAAAAAAAGCTTTACTCAATCAAGCAGAGATACCGGTCATAACGGTAATGGATGT
AACGGAAACTCCCATTGAACGCCCCCAAAAGAAACAGAAAGATTTTTTTTCGGGTAAAAGAGGTTATCATACTTTAAAATCCCAATTAGTAGCTGATCAA
AATACAGAGGAAATTATCTGTGTCTTTTGTGGGAAAGGTAGAGGTCATGATTTTAGTTTATTTAAAAAAAGTCGAGTTCGTTTTCATCCTTTAACTACCA
GCATAGAAGACAGTGGTTATCAGGGAATAGCTGCATACCATAGTAATAGTTATACACCGAAAAAGAAATCGAAAAATAGAAAATTAACAGAGTTAGAAAA
AGAGTATAACAAGGCTTTAGCCAAAGAAAGGATTATCATTGAACATATAAATAGGAAACTCAAAATCTTTAAAATCTTATCCTGTAAATATCGGAATCGT
CGTCGAAGATATAGTTTAAGAGTTAACTTGTTGGCGGCTATTTATAACTGTGAGTTAGGGATAGGTATAGCAGCTTCCTAAAAGTTGCCTAAAGATTAAT
CAAGTCAAGGAGAATTTATTCTCAATTTTTATAATTGAGATAGTTTGTGCCGCTTAAATAAAGAGGTTTTGATAACCAAATTAAAGCAGCTCTAAAGAGT
TTTGAGTTAAAAGTTAAACTTCAAGTTTTCATTCAGGACGAATGTACTGATTAACTAATTTTTTTGGGAAAATTAGTTAACCCATCATTATAACATATAA
TTAATTTGCAAGAGTTCT
AGGAAATCATCTATAATTTTGCTATGTTTATTAGCAAAATTATGGATTATCAAAACTTATCAGATGAACAATTCAAACGCCGTTTCGGTGTGTATAAACA
AACATATAGAAAGATGGTAGAATCAGTAAAAAGTGTTGAAGCCGACTCTAATTCACCATCTAAAAGGGGACCGAAACCTAAACTATCTATAGAAGAACAA
GTTTTAGTAACGTTAGAATATTGGCGAGAATATAGAACATATTTTCACATTGGTACAAGCTGGGAACTATCAGAATCAACTATATGTCGGATTGTAAATA
AGACGGAAAAAATGCTTTTACAATCGGGAAACTTCCGTTTAAAAGGAAAAAAAGCTTTACTCAATCAAGCAGAGATACCGGTCATAACGGTAATGGATGT
AACGGAAACTCCCATTGAACGCCCCCAAAAGAAACAGAAAGATTTTTTTTCGGGTAAAAGAGGTTATCATACTTTAAAATCCCAATTAGTAGCTGATCAA
AATACAGAGGAAATTATCTGTGTCTTTTGTGGGAAAGGTAGAGGTCATGATTTTAGTTTATTTAAAAAAAGTCGAGTTCGTTTTCATCCTTTAACTACCA
GCATAGAAGACAGTGGTTATCAGGGAATAGCTGCATACCATAGTAATAGTTATACACCGAAAAAGAAATCGAAAAATAGAAAATTAACAGAGTTAGAAAA
AGAGTATAACAAGGCTTTAGCCAAAGAAAGGATTATCATTGAACATATAAATAGGAAACTCAAAATCTTTAAAATCTTATCCTGTAAATATCGGAATCGT
CGTCGAAGATATAGTTTAAGAGTTAACTTGTTGGCGGCTATTTATAACTGTGAGTTAGGGATAGGTATAGCAGCTTCCTAAAAGTTGCCTAAAGATTAAT
CAAGTCAAGGAGAATTTATTCTCAATTTTTATAATTGAGATAGTTTGTGCCGCTTAAATAAAGAGGTTTTGATAACCAAATTAAAGCAGCTCTAAAGAGT
TTTGAGTTAAAAGTTAAACTTCAAGTTTTCATTCAGGACGAATGTACTGATTAACTAATTTTTTTGGGAAAATTAGTTAACCCATCATTATAACATATAA
TTAATTTGCAAGAGTTCT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
858 bp | 285 aa | 124 | 981 | + | No |
Chemistry : DDE
ORF sequence :
MFISKIMDYQNLSDEQFKRRFGVYKQTYRKMVESVKSVEADSNSPSKRGPKPKLSIEEQVLVTLEYWREYRTYFHIGTSWELSESTICRIVNKTEKMLLQ
SGNFRLKGKKALLNQAEIPVITVMDVTETPIERPQKKQKDFFSGKRGYHTLKSQLVADQNTEEIICVFCGKGRGHDFSLFKKSRVRFHPLTTSIEDSGYQ
GIAAYHSNSYTPKKKSKNRKLTELEKEYNKALAKERIIIEHINRKLKIFKILSCKYRNRRRRYSLRVNLLAAIYNCELGIGIAAS
SGNFRLKGKKALLNQAEIPVITVMDVTETPIERPQKKQKDFFSGKRGYHTLKSQLVADQNTEEIICVFCGKGRGHDFSLFKKSRVRFHPLTTSIEDSGYQ
GIAAYHSNSYTPKKKSKNRKLTELEKEYNKALAKERIIIEHINRKLKIFKILSCKYRNRRRRYSLRVNLLAAIYNCELGIGIAAS
Blast result :
Comments
ISMae4 is 67% aa similar to IS702.
ISMae4 was isolated as an insertion into the gvp genes to produced spontaneous GV-deficient mutants.
ISMae4 was isolated as an insertion into the gvp genes to produced spontaneous GV-deficient mutants.
References
1] Mlouka,A., Comte,K., Castets,A.M., Bouchier,C. and Tandeau De Marsac,N. (2004) J. Bacteriol. 186 (8), 2355-2365