ISMbu4

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AADH02000016 ND Methanococcoides burtonii
Methanococcoides burtonii DSM 6242
DNA section
IS Length : 1274 bp

Ends


IR Length : 22/27

IRL : GGATCTCCTCAACATTGAGTGGGTAATTTAATATTCGTTTCTTCCAATTC
IRR : GGTTCTCTTTAACATCGTGTGGGTAAACTCAGTTTCCCTGCCATCAAGAA

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GGATCTCCTCAACATTGAGTGGGTAATTTAATATTCGTTTCTTCCAATTCAATCATTATGGAAGATAAAGAACTCATTCAAATTACCCTTGGCTTATTAT
CCCCTTGGTTTGTAAAAGACATTGATCTCAATACTTCTAAAAGGAGGATGGACATCTACCTTGATTTTTCCAAGGGTACTAAATTCTCATGCCCTGTTTG
CAACAAATTAAGTGAACTCCATGATACAAAAAAAAAGGTGTGGAGACACCTCGACTTTTTTCATTATGAAACATACCTTCATGCCAGAGTCCCTCGAACA
AAATGTAATGAACATGGTGTAAAGCTTGTCAATGTTCCCTGGACAAGACAAAACACTGGATTTACCTTGTTCTTTGAAGCATTAATTGTTGCTATATCCA
AGGAAATGACTGTGTCTGCTATTGCTGAAATGATTAACATTCATGAAGATTCAGTATGGAGAATTCTCACTCATTATGTTAACAAAGCAGCAGCAAAGAT
GGACCTGTCTGGTCTTGATACAATTGGAGTGGATGAGATATCTGTCAAAAAAGGTCACAGTTATGTGACTTTGTTCTATGATCTCAATAAATCAAGAATA
ATTCATATTGAAAATGGAAAGAAAAGAAGTGTGTTCAAAAAGTTTAGAGAATATCTTTCCAAGAAGATTGATCCTGATAACATTAAGTATATCTCGATGG
ATATGTACCCTGCTTTCAAAGGAGGGGCACGAGAATATTTTCCAAATGCTAAGATCGTTTATGATAAGTTTCACATTGTAAAAATGATGAATGATGCTAT
TGATAAAGTTCGAAGATCTGAGTATCAATCAAATAAAGATCTTGGTAAAACCAGATTCATGTGGTTGAAAAATCCTGAAAATTTATCAGATAGAGAAATC
GCTAAAATACAATCGATCAAGGATTTGGATACTAAAACTGCTAAAGCGTACAAGTTTAAACTTGCACTCCAGCGATTATGGGAAATCAAAAATATGGATG
TAGCAAGAGAGTATATTGAAAAATGGCATTATTGGGGAACACATAGCAACATTAAGGAAGTTATCACATTAGCAAAGATGATAAAAAGAAATTCTCATGG
AATTCTGGAATCAATTAAGGGAAATATTAGCAATGGTGTTGTTGAAGGATTGAACAACAAGATCAAGACTGCTTTTAAGAGATCGTATGGATTGAAGACT
GAAGTGTACAGGAATAAAATGATATTCTTGATGGCAGGGAAACTGAGTTTACCCACACGATGTTAAAGAGAACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1209 bp402 aa581266+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MEDKELIQITLGLLSPWFVKDIDLNTSKRRMDIYLDFSKGTKFSCPVCNKLSELHDTKKKVWRHLDFFHYETYLHARVPRTKCNEHGVKLVNVPWTRQNT
GFTLFFEALIVAISKEMTVSAIAEMINIHEDSVWRILTHYVNKAAAKMDLSGLDTIGVDEISVKKGHSYVTLFYDLNKSRIIHIENGKKRSVFKKFREYL
SKKIDPDNIKYISMDMYPAFKGGAREYFPNAKIVYDKFHIVKMMNDAIDKVRRSEYQSNKDLGKTRFMWLKNPENLSDREIAKIQSIKDLDTKTAKAYKF
KLALQRLWEIKNMDVAREYIEKWHYWGTHSNIKEVITLAKMIKRNSHGILESIKGNISNGVVEGLNNKIKTAFKRSYGLKTEVYRNKMIFLMAGKLSLPT
RC

 

Blast result :
Comments
ISMbu4 is 63% aa similar to ISTfe1.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T.,
Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2003) Direct submission GenBank.