ISMbu4
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AADH02000016 | ND | Methanococcoides burtonii | Methanococcoides burtonii DSM 6242 |
DNA section
IS Length : 1274 bp
Ends
IR Length : 22/27
IRL : GGATCTCCTCAACATTGAGTGGGTAATTTAATATTCGTTTCTTCCAATTC
IRR : GGTTCTCTTTAACATCGTGTGGGTAAACTCAGTTTCCCTGCCATCAAGAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGATCTCCTCAACATTGAGTGGGTAATTTAATATTCGTTTCTTCCAATTCAATCATTATGGAAGATAAAGAACTCATTCAAATTACCCTTGGCTTATTAT
CCCCTTGGTTTGTAAAAGACATTGATCTCAATACTTCTAAAAGGAGGATGGACATCTACCTTGATTTTTCCAAGGGTACTAAATTCTCATGCCCTGTTTG
CAACAAATTAAGTGAACTCCATGATACAAAAAAAAAGGTGTGGAGACACCTCGACTTTTTTCATTATGAAACATACCTTCATGCCAGAGTCCCTCGAACA
AAATGTAATGAACATGGTGTAAAGCTTGTCAATGTTCCCTGGACAAGACAAAACACTGGATTTACCTTGTTCTTTGAAGCATTAATTGTTGCTATATCCA
AGGAAATGACTGTGTCTGCTATTGCTGAAATGATTAACATTCATGAAGATTCAGTATGGAGAATTCTCACTCATTATGTTAACAAAGCAGCAGCAAAGAT
GGACCTGTCTGGTCTTGATACAATTGGAGTGGATGAGATATCTGTCAAAAAAGGTCACAGTTATGTGACTTTGTTCTATGATCTCAATAAATCAAGAATA
ATTCATATTGAAAATGGAAAGAAAAGAAGTGTGTTCAAAAAGTTTAGAGAATATCTTTCCAAGAAGATTGATCCTGATAACATTAAGTATATCTCGATGG
ATATGTACCCTGCTTTCAAAGGAGGGGCACGAGAATATTTTCCAAATGCTAAGATCGTTTATGATAAGTTTCACATTGTAAAAATGATGAATGATGCTAT
TGATAAAGTTCGAAGATCTGAGTATCAATCAAATAAAGATCTTGGTAAAACCAGATTCATGTGGTTGAAAAATCCTGAAAATTTATCAGATAGAGAAATC
GCTAAAATACAATCGATCAAGGATTTGGATACTAAAACTGCTAAAGCGTACAAGTTTAAACTTGCACTCCAGCGATTATGGGAAATCAAAAATATGGATG
TAGCAAGAGAGTATATTGAAAAATGGCATTATTGGGGAACACATAGCAACATTAAGGAAGTTATCACATTAGCAAAGATGATAAAAAGAAATTCTCATGG
AATTCTGGAATCAATTAAGGGAAATATTAGCAATGGTGTTGTTGAAGGATTGAACAACAAGATCAAGACTGCTTTTAAGAGATCGTATGGATTGAAGACT
GAAGTGTACAGGAATAAAATGATATTCTTGATGGCAGGGAAACTGAGTTTACCCACACGATGTTAAAGAGAACC
CCCCTTGGTTTGTAAAAGACATTGATCTCAATACTTCTAAAAGGAGGATGGACATCTACCTTGATTTTTCCAAGGGTACTAAATTCTCATGCCCTGTTTG
CAACAAATTAAGTGAACTCCATGATACAAAAAAAAAGGTGTGGAGACACCTCGACTTTTTTCATTATGAAACATACCTTCATGCCAGAGTCCCTCGAACA
AAATGTAATGAACATGGTGTAAAGCTTGTCAATGTTCCCTGGACAAGACAAAACACTGGATTTACCTTGTTCTTTGAAGCATTAATTGTTGCTATATCCA
AGGAAATGACTGTGTCTGCTATTGCTGAAATGATTAACATTCATGAAGATTCAGTATGGAGAATTCTCACTCATTATGTTAACAAAGCAGCAGCAAAGAT
GGACCTGTCTGGTCTTGATACAATTGGAGTGGATGAGATATCTGTCAAAAAAGGTCACAGTTATGTGACTTTGTTCTATGATCTCAATAAATCAAGAATA
ATTCATATTGAAAATGGAAAGAAAAGAAGTGTGTTCAAAAAGTTTAGAGAATATCTTTCCAAGAAGATTGATCCTGATAACATTAAGTATATCTCGATGG
ATATGTACCCTGCTTTCAAAGGAGGGGCACGAGAATATTTTCCAAATGCTAAGATCGTTTATGATAAGTTTCACATTGTAAAAATGATGAATGATGCTAT
TGATAAAGTTCGAAGATCTGAGTATCAATCAAATAAAGATCTTGGTAAAACCAGATTCATGTGGTTGAAAAATCCTGAAAATTTATCAGATAGAGAAATC
GCTAAAATACAATCGATCAAGGATTTGGATACTAAAACTGCTAAAGCGTACAAGTTTAAACTTGCACTCCAGCGATTATGGGAAATCAAAAATATGGATG
TAGCAAGAGAGTATATTGAAAAATGGCATTATTGGGGAACACATAGCAACATTAAGGAAGTTATCACATTAGCAAAGATGATAAAAAGAAATTCTCATGG
AATTCTGGAATCAATTAAGGGAAATATTAGCAATGGTGTTGTTGAAGGATTGAACAACAAGATCAAGACTGCTTTTAAGAGATCGTATGGATTGAAGACT
GAAGTGTACAGGAATAAAATGATATTCTTGATGGCAGGGAAACTGAGTTTACCCACACGATGTTAAAGAGAACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1209 bp | 402 aa | 58 | 1266 | + | No |
Chemistry : Unknow
ORF sequence :
MEDKELIQITLGLLSPWFVKDIDLNTSKRRMDIYLDFSKGTKFSCPVCNKLSELHDTKKKVWRHLDFFHYETYLHARVPRTKCNEHGVKLVNVPWTRQNT
GFTLFFEALIVAISKEMTVSAIAEMINIHEDSVWRILTHYVNKAAAKMDLSGLDTIGVDEISVKKGHSYVTLFYDLNKSRIIHIENGKKRSVFKKFREYL
SKKIDPDNIKYISMDMYPAFKGGAREYFPNAKIVYDKFHIVKMMNDAIDKVRRSEYQSNKDLGKTRFMWLKNPENLSDREIAKIQSIKDLDTKTAKAYKF
KLALQRLWEIKNMDVAREYIEKWHYWGTHSNIKEVITLAKMIKRNSHGILESIKGNISNGVVEGLNNKIKTAFKRSYGLKTEVYRNKMIFLMAGKLSLPT
RC
GFTLFFEALIVAISKEMTVSAIAEMINIHEDSVWRILTHYVNKAAAKMDLSGLDTIGVDEISVKKGHSYVTLFYDLNKSRIIHIENGKKRSVFKKFREYL
SKKIDPDNIKYISMDMYPAFKGGAREYFPNAKIVYDKFHIVKMMNDAIDKVRRSEYQSNKDLGKTRFMWLKNPENLSDREIAKIQSIKDLDTKTAKAYKF
KLALQRLWEIKNMDVAREYIEKWHYWGTHSNIKEVITLAKMIKRNSHGILESIKGNISNGVVEGLNNKIKTAFKRSYGLKTEVYRNKMIFLMAGKLSLPT
RC
Blast result :
Comments
ISMbu4 is 63% aa similar to ISTfe1.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T.,
Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2003) Direct submission GenBank.
Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2003) Direct submission GenBank.