ISMk1
- Family ISNCY
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
L11041 | ND | Mycobacterium kansasii | Mycobacterium kansasii |
DNA section
IS Length : 947 bp
Ends
IR Length :
IRL : TAGCCCGGATGTTTCGTGGGGTTGACGTGGTGGCCTGATCGGGTCGGATT
IRR : CTAACACCGCCGCCGACCACAAAACGGTCCTCCGTGCGCGCTGGAGCAAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
TAGCCCGGATGTTTCGTGGGGTTGACGTGGTGGCCTGATCGGGTCGGATTGTGGTTTTGGATCTTGATTTTCGGTTGGGGGGTGCGGTGGTGGCCCGGGT
CAGCGGCTTCTGCGGGGTTCCTTGGGCCCGGGGTGGTCCTTTCTTGGGTCGTGGGACGGTTGGGTAGTTGGTCAGCCGGGTTGCAGGCGGGCCAACGCGG
TGGTCAACACGTCGGCCCAGGGTGCGTGCGCGGCGAGGCGCAGCCGGGTTCGGCGGGCGTGGCGGGCCAGGCGGCCGGCGATCGAAAACAGCCGCAGCCG
TAGTCGTTTGGGTTCCCAGCGCCGCGCCGGGTGCTCCTCGAAGGCCAGCATTTGGCACCAGGCGGTCAGCTCCATGGCCAGCTGCACCAATGCGCACCAG
ATCCGGTTTTGGTCGAATCCGTGCAGGGGGAGGTTGGCCAGGCCGGTGTCTTTGGCGACCCGGATGCGGTTCTTCGCAGCGGGCGCGGCGGCGATGGCGC
AGTTCGAGATCGGGCAGCTGCCCACGGGTGGTGTTGGTGACGAACGCGGTCAGCCGTAACCCGTCGCGGTCGGTGAAACGTAGCTGGGCGCCCGGATGAG
GGCGTTCTTTGCGCACGATCAGCCGCATCCCCGCGGGCCAGTCCGACAGGTCAACGACCCCGGTTGCCTCGGTGACCCACGCCCCGTCACGGACCTGCCC
ATCAGCGTCGTAGGCCGGGGTCCACGCCGTCTGGGGAATCGCGTCGATGCCGGTGGCCATCGTCTCGGTGAGGGCAAATCCCAGCGAGTAGGACAGCCGG
CGCGCGCTCAGGTAGTTGAGGAATTCGTGGGTGGCCCCGGCGGCGTCGGTGCGCACCAGAACTTTCTTGCCGACCCGATAGCCGACCTGAAAGGGCAATT
GCTCCAGCGCGCACGGAGGACCGTTTTGTGGTCGGCGGCGGTGTTAG
CAGCGGCTTCTGCGGGGTTCCTTGGGCCCGGGGTGGTCCTTTCTTGGGTCGTGGGACGGTTGGGTAGTTGGTCAGCCGGGTTGCAGGCGGGCCAACGCGG
TGGTCAACACGTCGGCCCAGGGTGCGTGCGCGGCGAGGCGCAGCCGGGTTCGGCGGGCGTGGCGGGCCAGGCGGCCGGCGATCGAAAACAGCCGCAGCCG
TAGTCGTTTGGGTTCCCAGCGCCGCGCCGGGTGCTCCTCGAAGGCCAGCATTTGGCACCAGGCGGTCAGCTCCATGGCCAGCTGCACCAATGCGCACCAG
ATCCGGTTTTGGTCGAATCCGTGCAGGGGGAGGTTGGCCAGGCCGGTGTCTTTGGCGACCCGGATGCGGTTCTTCGCAGCGGGCGCGGCGGCGATGGCGC
AGTTCGAGATCGGGCAGCTGCCCACGGGTGGTGTTGGTGACGAACGCGGTCAGCCGTAACCCGTCGCGGTCGGTGAAACGTAGCTGGGCGCCCGGATGAG
GGCGTTCTTTGCGCACGATCAGCCGCATCCCCGCGGGCCAGTCCGACAGGTCAACGACCCCGGTTGCCTCGGTGACCCACGCCCCGTCACGGACCTGCCC
ATCAGCGTCGTAGGCCGGGGTCCACGCCGTCTGGGGAATCGCGTCGATGCCGGTGGCCATCGTCTCGGTGAGGGCAAATCCCAGCGAGTAGGACAGCCGG
CGCGCGCTCAGGTAGTTGAGGAATTCGTGGGTGGCCCCGGCGGCGTCGGTGCGCACCAGAACTTTCTTGCCGACCCGATAGCCGACCTGAAAGGGCAATT
GCTCCAGCGCGCACGGAGGACCGTTTTGTGGTCGGCGGCGGTGTTAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
856 bp | 285 aa | 92 | 947 | + | No |
Chemistry : Unknow
ORF sequence :
MTDAAGATHEFLNYLSARRLSYSLGFALTETMATGIDAIPQTAWTPAYDADGQVRDGAWVTEATGVVDLSDWPAGMRLIVRKERPHPGAQLRFTDRDGLR
LTAFVTNTTRGQLPDLELRHRRRARCEEPHPGRQRHRPGQPPPARIRPKPDLVRIGAAGHGADRLVPNAGLRGAPGAALGTQTTTAAAVFDRRPPGPPRP
PNPAAPRRARTLGRRVDHRVGPPATRLTNYPTVPRPKKGPPRAQGTPQKPLTRATTAPPNRKSRSKTTIRPDQATTSTPRNIRA
LTAFVTNTTRGQLPDLELRHRRRARCEEPHPGRQRHRPGQPPPARIRPKPDLVRIGAAGHGADRLVPNAGLRGAPGAALGTQTTTAAAVFDRRPPGPPRP
PNPAAPRRARTLGRRVDHRVGPPATRLTNYPTVPRPKKGPPRAQGTPQKPLTRATTAPPNRKSRSKTTIRPDQATTSTPRNIRA
Blast result :
Comments
Note that there is no stop codon at the end of ISMk1 largest ORF, considered here as its putative transposase.
References
1] Yang, M., Ross, B.C., and Dwyer, B. (1993) J. Clin. Microbiol. 31, 2074-2079
2] Chandler, M. (1993) Personal communication.
2] Chandler, M. (1993) Personal communication.