ISMbo1
- Family IS21
- Group
Isoform ISMt3Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AP010918 | ND | Mycobacterium bovis | Mycobacterium bovis BCG Tokyo 172 Mycobacterium bovis BCG |
DNA section
IS Length : 2212 bp
Ends
IR Length : 38/50
IRL : TGTCGACGGCACGTGAAAACTGACCCCGGCGCGGCACCCGAATTTTGACC
IRR : TGTCAACGGCACCCGAAAACTGACCCCCTGACGGCATCTGAAAATTGACC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTGCTGCTTA | CCGTT | CACAAGGGCG | 5 |
DNA sequence
TGTCGACGGCACGTGAAAACTGACCCCGGCGCGGCACCCGAATTTTGACCCCCTGGTCGGGTGGACTGGCTCTACCCGAGCCAGGAGGACCGAAGGGAAT
GTTGACTGTGGAAGATTGGGCTGAGATTCGCCGATTGCATCGCGCGGAGGGTTTGCCGATCAAGATGATCGCCCGGGTGCTGGGGATTTCCAAGAACACG
GTGAAGTCAGCGTTGGAATCAAACCAGCAGCCGAAATATGAACGGGCACCGCAGGGTTCGATCGTTGATGCGGTTGAGCCGCGGATCCGGGAGTTGTTGC
AGGCCTATCCGACGATGCCGGCGACGGTGATCGCCGAGCGGATCGGCTGGGAGCGCTCGATTCGGGTGCTCTCGGCGCGGGTGGCCGAGCTGCGCCCGGT
GTATCTGCCGCCGGACCCGGCGTCGCGCACCACGTATGTGGCAGGCGAAATTGCCCAGTGCGACTTCTGGTTTCCGCCGATCGAGTTGCCGGTAGGGTTC
GGGCAGACCCGCACGGCCAAACAGTTGCCGGTGCTGACCATGGTGTGCGCCTATTCGCGCTGGCTGTTGGCGATGCTGCTGCCCAGCAGGTGTGCCGAGG
ACCTGTTCGCCGGCTGGTGGCGGCTGATCGAGGCGTTGGGGGCGGTGCCGCGGGTGTTGGTGTGGGATGGCGAGGGCGCGATCGGGCGCTGGCGCGGCGG
GCGGTCGGAGTTGACCACTGAGTGTCAGGCGTTCCGCGGCACGCTGGCGGCCAAGGTGCTCATCTGCCGGCCGGCCGACCCGGAGGCCAAGGGCCTCATT
GAACGGGCCCACGACTACCTGGAGCGCTCGTTTTTGCCCGGGCGGGTGTTTGCCTCGCCGGCCGATTTCAACGCCCAACTGGGCGCCTGGCTGGCGCTGG
TGAACACCCGCACCCGCCGGGCGCTGGGTTGTGCGCCCACCGATCGCATCGGCGCGGATCGGGCCGCGATGCTGAGCTTGCCGCCGGTGGCGCCGGCCAC
CGGGTGGTGCACCTCGCTGCGGCTGCCCCGGGATCACTATGTGCGCTGCGATTCCAACGACTACTCGGTGCACCCGGGTGTGATCGGGCATCGGGTGCTG
GTGCGCGCCGACCTGGAGCGGGTGCATGTGTTCTGCGACGGTGAGCTGGTCGCCGACCACGAGCGGATCTGGGCGGTCCATCAGACGGTCTCCGATCCCG
CACATGTGGAGGCGGCGAAGGTGTTGCGCCGCCGGCACTTCAGTGCAGCATCACCGGTAGTTGAGCCGCAGGTGCAGGTCCGCTCACTGAGCGACTACGA
TGACGCGCTGGGAGTCGACATCGATGGCGGGGTGGCCTGATGCCCACCACCAAAGCCACCCAGCGCCGTGATGTTTCCACCGAGATCGCTTACCTGACAA
GAGCATTGAAAGCTCCCACCCTGCGTGAGTCAGTGTCCCGGCTGGCCGATCGCGCCCGCGCCGAGAACTGGAGCCACGAAGAATACCTGGCCGCCTGCCT
GCAGCGGGAAGTGTCAGCCCGGGAGTCCCATGGTGGTGAGGGCCGCATCCGCGCCGCCCGCTTCCCGGCTCGGAAGTCGTTGGAAGAGTTCGACTTTGAG
CATGCTCGTGGCCTCAAACGCGACACCATCGCACATCTGGGCACCCTGGATTTCATCACCGCCCGCGATAACGTCGTGTTTTTGGGCCCCGCTGGCACCG
GGAAGACTCATCTTGCGGTCGGCCTGGCGATACGCGCGTGTCAGGCCGGTCATCGGGTGCTGTTCGCCACCGCCGCCGAATGGGTAGCACGGCTCGCCGA
GGCTCACCACGCCGGGCGCATCTACGCCGAACTCACCCGGCTTTGCCGCTATCCGCTCCTGGTGGTTGACGAAGTCGGCTACATTCCGTTTGAGCCCGAG
GCCGCCAACCTCTTCTTCCAGCTGGTGTCCTCCCGGTATGAGCGGGCCAGCTTGATCGTCACGTCCAATAAGGCCTTCGGCCGGTGGGGCGAGGTTTTCG
GCGGCGACGACGTCGTTGCTGCCGCCATGATCGACCGCCTCGTCCACCATGCTGAAGTCGTCGCCCTCAAAGGCGACAGCTACCGGCTCAAAGACCGCGA
CCTCGGCCGCGTCCCACCAGCCGGAACCACCGAAGAATAACCACCAACCGCCCGGTCTAGGGGGTCAATTTTCAGATGCCGTCAGGGGGTCAGTTTTCGG
GTGCCGTTGACA
GTTGACTGTGGAAGATTGGGCTGAGATTCGCCGATTGCATCGCGCGGAGGGTTTGCCGATCAAGATGATCGCCCGGGTGCTGGGGATTTCCAAGAACACG
GTGAAGTCAGCGTTGGAATCAAACCAGCAGCCGAAATATGAACGGGCACCGCAGGGTTCGATCGTTGATGCGGTTGAGCCGCGGATCCGGGAGTTGTTGC
AGGCCTATCCGACGATGCCGGCGACGGTGATCGCCGAGCGGATCGGCTGGGAGCGCTCGATTCGGGTGCTCTCGGCGCGGGTGGCCGAGCTGCGCCCGGT
GTATCTGCCGCCGGACCCGGCGTCGCGCACCACGTATGTGGCAGGCGAAATTGCCCAGTGCGACTTCTGGTTTCCGCCGATCGAGTTGCCGGTAGGGTTC
GGGCAGACCCGCACGGCCAAACAGTTGCCGGTGCTGACCATGGTGTGCGCCTATTCGCGCTGGCTGTTGGCGATGCTGCTGCCCAGCAGGTGTGCCGAGG
ACCTGTTCGCCGGCTGGTGGCGGCTGATCGAGGCGTTGGGGGCGGTGCCGCGGGTGTTGGTGTGGGATGGCGAGGGCGCGATCGGGCGCTGGCGCGGCGG
GCGGTCGGAGTTGACCACTGAGTGTCAGGCGTTCCGCGGCACGCTGGCGGCCAAGGTGCTCATCTGCCGGCCGGCCGACCCGGAGGCCAAGGGCCTCATT
GAACGGGCCCACGACTACCTGGAGCGCTCGTTTTTGCCCGGGCGGGTGTTTGCCTCGCCGGCCGATTTCAACGCCCAACTGGGCGCCTGGCTGGCGCTGG
TGAACACCCGCACCCGCCGGGCGCTGGGTTGTGCGCCCACCGATCGCATCGGCGCGGATCGGGCCGCGATGCTGAGCTTGCCGCCGGTGGCGCCGGCCAC
CGGGTGGTGCACCTCGCTGCGGCTGCCCCGGGATCACTATGTGCGCTGCGATTCCAACGACTACTCGGTGCACCCGGGTGTGATCGGGCATCGGGTGCTG
GTGCGCGCCGACCTGGAGCGGGTGCATGTGTTCTGCGACGGTGAGCTGGTCGCCGACCACGAGCGGATCTGGGCGGTCCATCAGACGGTCTCCGATCCCG
CACATGTGGAGGCGGCGAAGGTGTTGCGCCGCCGGCACTTCAGTGCAGCATCACCGGTAGTTGAGCCGCAGGTGCAGGTCCGCTCACTGAGCGACTACGA
TGACGCGCTGGGAGTCGACATCGATGGCGGGGTGGCCTGATGCCCACCACCAAAGCCACCCAGCGCCGTGATGTTTCCACCGAGATCGCTTACCTGACAA
GAGCATTGAAAGCTCCCACCCTGCGTGAGTCAGTGTCCCGGCTGGCCGATCGCGCCCGCGCCGAGAACTGGAGCCACGAAGAATACCTGGCCGCCTGCCT
GCAGCGGGAAGTGTCAGCCCGGGAGTCCCATGGTGGTGAGGGCCGCATCCGCGCCGCCCGCTTCCCGGCTCGGAAGTCGTTGGAAGAGTTCGACTTTGAG
CATGCTCGTGGCCTCAAACGCGACACCATCGCACATCTGGGCACCCTGGATTTCATCACCGCCCGCGATAACGTCGTGTTTTTGGGCCCCGCTGGCACCG
GGAAGACTCATCTTGCGGTCGGCCTGGCGATACGCGCGTGTCAGGCCGGTCATCGGGTGCTGTTCGCCACCGCCGCCGAATGGGTAGCACGGCTCGCCGA
GGCTCACCACGCCGGGCGCATCTACGCCGAACTCACCCGGCTTTGCCGCTATCCGCTCCTGGTGGTTGACGAAGTCGGCTACATTCCGTTTGAGCCCGAG
GCCGCCAACCTCTTCTTCCAGCTGGTGTCCTCCCGGTATGAGCGGGCCAGCTTGATCGTCACGTCCAATAAGGCCTTCGGCCGGTGGGGCGAGGTTTTCG
GCGGCGACGACGTCGTTGCTGCCGCCATGATCGACCGCCTCGTCCACCATGCTGAAGTCGTCGCCCTCAAAGGCGACAGCTACCGGCTCAAAGACCGCGA
CCTCGGCCGCGTCCCACCAGCCGGAACCACCGAAGAATAACCACCAACCGCCCGGTCTAGGGGGTCAATTTTCAGATGCCGTCAGGGGGTCAGTTTTCGG
GTGCCGTTGACA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1242 bp | 413 aa | 99 | 1340 | + | No |
Chemistry : DDE
ORF sequence :
MLTVEDWAEIRRLHRAEGLPIKMIARVLGISKNTVKSALESNQQPKYERAPQGSIVDAVEPRIRELLQAYPTMPATVIAERIGWERSIRVLSARVAELRP
VYLPPDPASRTTYVAGEIAQCDFWFPPIELPVGFGQTRTAKQLPVLTMVCAYSRWLLAMLLPSRCAEDLFAGWWRLIEALGAVPRVLVWDGEGAIGRWRG
GRSELTTECQAFRGTLAAKVLICRPADPEAKGLIERAHDYLERSFLPGRVFASPADFNAQLGAWLALVNTRTRRALGCAPTDRIGADRAAMLSLPPVAPA
TGWCTSLRLPRDHYVRCDSNDYSVHPGVIGHRVLVRADLERVHVFCDGELVADHERIWAVHQTVSDPAHVEAAKVLRRRHFSAASPVVEPQVQVRSLSDY
DDALGVDIDGGVA
VYLPPDPASRTTYVAGEIAQCDFWFPPIELPVGFGQTRTAKQLPVLTMVCAYSRWLLAMLLPSRCAEDLFAGWWRLIEALGAVPRVLVWDGEGAIGRWRG
GRSELTTECQAFRGTLAAKVLICRPADPEAKGLIERAHDYLERSFLPGRVFASPADFNAQLGAWLALVNTRTRRALGCAPTDRIGADRAAMLSLPPVAPA
TGWCTSLRLPRDHYVRCDSNDYSVHPGVIGHRVLVRADLERVHVFCDGELVADHERIWAVHQTVSDPAHVEAAKVLRRRHFSAASPVVEPQVQVRSLSDY
DDALGVDIDGGVA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
801 bp | 266 aa | 1340 | 2140 | + | No |
AG : IS21 helper
ORF sequence :
MPTTKATQRRDVSTEIAYLTRALKAPTLRESVSRLADRARAENWSHEEYLAACLQREVSARESHGGEGRIRAARFPARKSLEEFDFEHARGLKRDTIAHL
GTLDFITARDNVVFLGPAGTGKTHLAVGLAIRACQAGHRVLFATAAEWVARLAEAHHAGRIYAELTRLCRYPLLVVDEVGYIPFEPEAANLFFQLVSSRY
ERASLIVTSNKAFGRWGEVFGGDDVVAAAMIDRLVHHAEVVALKGDSYRLKDRDLGRVPPAGTTEE
GTLDFITARDNVVFLGPAGTGKTHLAVGLAIRACQAGHRVLFATAAEWVARLAEAHHAGRIYAELTRLCRYPLLVVDEVGYIPFEPEAANLFFQLVSSRY
ERASLIVTSNKAFGRWGEVFGGDDVVAAAMIDRLVHHAEVVALKGDSYRLKDRDLGRVPPAGTTEE
Blast result :
Comments
The previous sequence (accession number : AJ238712) was truncated at the 5' end and was replaced by a complete copy found in a sequenced genome (July 2012).
References
1] Lefevre, P., Braibant, M., Content, J. and gilot, P. (1999) FEMS Microbiol.Lett. 178, 211-217
2] Seki,M., Honda,I., Fujita,I., Yano,I., Yamamoto,S. and Koyama,A. (2009) Vaccine 27 (11), 1710-1716
2] Seki,M., Honda,I., Fujita,I., Yano,I., Yamamoto,S. and Koyama,A. (2009) Vaccine 27 (11), 1710-1716