ISM1
- Family ISNCY
- Group ISM1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
X02587 | ND | Methanobrevibacter smithii | Methanobrevibacter smithii |
DNA section
IS Length : 1381 bp
Ends
IR Length : 33/34
IRL : GAGTCTGTAAAATTTTATAGGCTTATTTGTTTTTTAATTTTTTACAGTTG
IRR : GAGTCTGTAAAATTTTATAGGCTTATTTGATTTTAATGTGTTTTTCAGTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TATTATTTTA | ATCTTATT | TAAATATTGC | 8 |
DNA sequence
GAGTCTGTAAAATTTTATAGGCTTATTTGTTTTTTAATTTTTTACAGTTGAACTTTCATTTTGATGAAATTTCATTCTAATTTTTCTTTAATTTTAATAT
AAATGATTTAAAAATAGTAAAATACTTTAATAAGTGAGGACAAATAATATTTTATGACCAAACAAAACAAATCTGCCCTCAATAGTAATATAGACTTCAT
ACAACTTAAACTTTATGATTTTTTTGATGAAAAAATTGATCAAGAAAAAATTATTTCAAAAAGATTGAATAAAACACCTAATTTTGAAAATACTAATCAT
AAACTATTTTTAGATGAAAATAATACTTTTAAATATGATAATCCCATTTGTCCAGTTTGTGGAAGCCACAAAATAATCAAAAAAGGCACAATAAAGAAAA
ACAAACAAAATACTAATGGAAAAACAACAGAATTCAAAGAACAGCAATATCAATGCAAAAAATGTGGAAAAAAATTCGGAATATACAATAATCCATTAAT
TGGTGAAAATAAACAATTTTTACAAGAAATAATGGATAAAATTCCAGGAATAATGAAAATAGGGTACCAATCACTTCGTAAAATAAGTAAATACTTTGAA
ATATTCCTTGGAATCAGAATATCTCATCAAACAATCAAGAACTGGTCTGACAAAAATCACGAAGAAAGCATCAGCAATGAAAAATTTGAATATTCTGGCT
ATTATTTATATGATGAGCAATTTTTAAGACTTAATGGAACTAGACACTACAGATTAACTTTATTTGATGCAATACTCAATATTCCAGTCACAGAACGAAT
AGTACGTCGCAGAATACCAAAAAACACGAAAAAATTTATCTTAGAATCAACAGAAAATAAACCATTCATTTGCCTAACAACCGATTTATTCCCAATGTAT
CGTAATGTAGCAGATGAAATAGAAGTAAAACATCAATTGTGCATATTTCATCTGTTTCAAACAATAAACCATAAATTAAAAGTATATTGTAGAAGAAACA
AGATTAATGGAAAACAAAGAGACCATATTTACGAAAATGCACAAGAATTAAAAAACTGTTTCAGACAAAACTCAAAAAAAGAAGCAATAGAACAATTTAA
ACAATATTTACAAAAATATACGGCCATACCAGTTGTTTTAAAAGATTTCATAAGAAAACATATCATAAATCACTTCCACAGATACGTAGAATATCTTGAT
GATGAAAATATAGAAAAAACATCAAATAAAGTCGAAAATTACTACAGACAAACCAATCCTGAAAAAATAAAGAAAATATACAAAACCAAAAATGGAATCC
TGACATTTTTAGACTATCAAATGCAAAATTGGACTGAAAAACACATTAAAATCAAATAAGCCTATAAAATTTTACAGACTC
AAATGATTTAAAAATAGTAAAATACTTTAATAAGTGAGGACAAATAATATTTTATGACCAAACAAAACAAATCTGCCCTCAATAGTAATATAGACTTCAT
ACAACTTAAACTTTATGATTTTTTTGATGAAAAAATTGATCAAGAAAAAATTATTTCAAAAAGATTGAATAAAACACCTAATTTTGAAAATACTAATCAT
AAACTATTTTTAGATGAAAATAATACTTTTAAATATGATAATCCCATTTGTCCAGTTTGTGGAAGCCACAAAATAATCAAAAAAGGCACAATAAAGAAAA
ACAAACAAAATACTAATGGAAAAACAACAGAATTCAAAGAACAGCAATATCAATGCAAAAAATGTGGAAAAAAATTCGGAATATACAATAATCCATTAAT
TGGTGAAAATAAACAATTTTTACAAGAAATAATGGATAAAATTCCAGGAATAATGAAAATAGGGTACCAATCACTTCGTAAAATAAGTAAATACTTTGAA
ATATTCCTTGGAATCAGAATATCTCATCAAACAATCAAGAACTGGTCTGACAAAAATCACGAAGAAAGCATCAGCAATGAAAAATTTGAATATTCTGGCT
ATTATTTATATGATGAGCAATTTTTAAGACTTAATGGAACTAGACACTACAGATTAACTTTATTTGATGCAATACTCAATATTCCAGTCACAGAACGAAT
AGTACGTCGCAGAATACCAAAAAACACGAAAAAATTTATCTTAGAATCAACAGAAAATAAACCATTCATTTGCCTAACAACCGATTTATTCCCAATGTAT
CGTAATGTAGCAGATGAAATAGAAGTAAAACATCAATTGTGCATATTTCATCTGTTTCAAACAATAAACCATAAATTAAAAGTATATTGTAGAAGAAACA
AGATTAATGGAAAACAAAGAGACCATATTTACGAAAATGCACAAGAATTAAAAAACTGTTTCAGACAAAACTCAAAAAAAGAAGCAATAGAACAATTTAA
ACAATATTTACAAAAATATACGGCCATACCAGTTGTTTTAAAAGATTTCATAAGAAAACATATCATAAATCACTTCCACAGATACGTAGAATATCTTGAT
GATGAAAATATAGAAAAAACATCAAATAAAGTCGAAAATTACTACAGACAAACCAATCCTGAAAAAATAAAGAAAATATACAAAACCAAAAATGGAATCC
TGACATTTTTAGACTATCAAATGCAAAATTGGACTGAAAAACACATTAAAATCAAATAAGCCTATAAAATTTTACAGACTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1196 bp | 397 aa | 154 | 1349 | + | No |
Chemistry : Unknow
ORF sequence :
MTKQNKSALNSNIDFIQLKLYDFFDEKIDQEKIISKRLNKTPNFENTNHKLFLDENNTFKYDNPICPVCGSHKIIKKGTIKKNKQNTNGKTTEFKEQQYQ
CKKCGKKFGIYNNPLIGENKQFLQEIMDKIPGIMKIGYQSLRKISKYFEIFLGIRISHQTIKNWSDKNHEESISNEKFEYSGYYLYDEQFLRLNGTRHYR
LTLFDAILNIPVTERIVRRRIPKNTKKFILESTENKPFICLTTDLFPMYRNVADEIEVKHQLCIFHLFQTINHKLKVYCRRNKINGKQRDHIYENAQELK
NCFRQNSKKEAIEQFKQYLQKYTAIPVVLKDFIRKHIINHFHRYVEYLDDENIEKTSNKVENYYRQTNPEKIKKIYKTKNGILTFLDYQMQNWTEKH
CKKCGKKFGIYNNPLIGENKQFLQEIMDKIPGIMKIGYQSLRKISKYFEIFLGIRISHQTIKNWSDKNHEESISNEKFEYSGYYLYDEQFLRLNGTRHYR
LTLFDAILNIPVTERIVRRRIPKNTKKFILESTENKPFICLTTDLFPMYRNVADEIEVKHQLCIFHLFQTINHKLKVYCRRNKINGKQRDHIYENAQELK
NCFRQNSKKEAIEQFKQYLQKYTAIPVVLKDFIRKHIINHFHRYVEYLDDENIEKTSNKVENYYRQTNPEKIKKIYKTKNGILTFLDYQMQNWTEKH
Blast result :
Comments
Methanobrevibacter smithii is an archaebacterium. ISM1 might be (very) distantly related to the ISL3 family.
References
1] Hamilton, P.T., and Reeve, J.N. (1985) Mol. Gen. Genet. 200, 47-59.