ISMebo1

  • Family IS701
  • Group ISAba11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_018227 ND Methanoculleus bourgensis
Methanoculleus bourgensis MS2
DNA section
IS Length : 1084 bp

Ends


IR Length : 15/17

IRL : TAGGAGTTACGCACTTCTACGTTTCGACCAAAAGATCCATATATAATAAC
IRR : TAGGAGTTACGCAGATCGCTCGCAAAAAAAACTAGAGCGCATACCTTGGG

Insertion site


Left flankDirect repeatRight flankDR Length
ACGTAGATAGCTGAAGATCGTGACG0

DNA sequence

TAGGAGTTACGCACTTCTACGTTTCGACCAAAAGATCCATATATAATAACAGCAAAATAATTCTTCGTGGTACGCTCTCCGCCGCTCTCTGACTGCGATT
ACATCAATTTCCTTGTCGCTGCTCAGTGCGATGTTTCTTGCGTAAAAGCTGCCGAATGCTTTTCCGGCAATGGTTTGGTCATCACTCACGATGCGTTCAA
CCGCTTTCTCACGAGACAGTCCTTACCCCCGGAGACGTTGTGGGCTGAGGTTGAACCCTTCGTCGAGAAACGCCATGGCTGGTTCATTCTGGACGATACC
GTCATCGACAAAGTCTATTCCGAGAAGATCGCCTTGACGTATTTCCAGTGGAGCGGCAACCAGCATAAGGTCATCAAAGGGATCGGTCTGATCACTCTGG
TCTGGACCGATGGAGTAAGTACGTTCCCCATCGATTACCGCATTTACGACAAAGACGGCGATCATCTCACCAAGAATGACCATTTCCGCGCCATGCTGCA
GACGGCAACAGATCGAGGATTCTGCCCATATTTCGTGTTGTTTGACAGTTGGTATGCCAGTACAGCGAATCTGAAATTCATCGATAGACGAGGATGGTGT
TGGTTTTCCCGGGTCAAAAAGAACCGGATGGTGAATCTGGATGATACGGAAAACCGACCAGTTGCCACTCTGACCATCCCGGACGATGGGATGGTGGTCC
ATATGAAGAGATATGGATTCATCAAACTGTTCCATTCAGTCAATAAAGCGGGGAAAGACCGGTACTGGGCGACGAATTGCCTCACTATGGATGCGACCGA
CAGAAGGAACCTGCAAGCAATTGCCTGGTCAATCGAGAACTATCATCGAGCACTGAAAGAACTCTGTTGCGTGGAGGACTGCAAAATCCGCAAGGAGGCA
GGACAACGCAACCATATCAACTGCTCACTGCGCGCATATATTCGATTAGAGGCGGTGCAGCAACAGCAGGATGTGACCATCTACCAGGCGAAGTGGGAGA
TTATCAGATCCGCCATTACGGAGTATGTTCGGCACCCAAGGTATGCGCTCTAGTTTTTTTTGCGAGCGATCTGCGTAACTCCTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
987 bp328 aa671053+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MVRSPPLSDCDYINFLVAAQCDVSCVKAAECFSGNGLVITHDAFNRFLTRQSLPPETLWAEVEPFVEKRHGWFILDDTVIDKVYSEKIALTYFQWSGNQH
KVIKGIGLITLVWTDGVSTFPIDYRIYDKDGDHLTKNDHFRAMLQTATDRGFCPYFVLFDSWYASTANLKFIDRRGWCWFSRVKKNRMVNLDDTENRPVA
TLTIPDDGMVVHMKRYGFIKLFHSVNKAGKDRYWATNCLTMDATDRRNLQAIAWSIENYHRALKELCCVEDCKIRKEAGQRNHINCSLRAYIRLEAVQQQ
QDVTIYQAKWEIIRSAITEYVRHPRYAL

 

Blast result :
Comments
ISMebo1 is 78% aa similar to ISMhu9.
References
1] ISfinder annotation (2012)
2] Maus,I. (2012) Direct submission