ISMig1
- Family IS701
- Group ISAba11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_015562 | ND | Methanotorris igneus | Methanotorris igneus Kol 5 |
DNA section
IS Length : 1137 bp
Ends
IR Length : 30/36
IRL : TAGAACTTTCGCAAGTATATTTGAATATTTAATTATAATCACTAAATTAA
IRR : TAGGACTTTCGCAAATACATTTAAATACTTAGATTAACAATAAACCAGCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGCAAAATAG | TTAAAT | AATCTACGAT | 0 |
GCCTTTTCTT | TTTAGA | CCTCTTTTTC | 0 |
ATTGTGTAAT | ATCTC | TTCTAATCAT | 0 |
DNA sequence
TAGAACTTTCGCAAGTATATTTGAATATTTAATTATAATCACTAAATTAAATATATCTATTGCAATCTTAATATCATTATTTCGAATAACAAAAATTGTT
TTGGGATAATATGCTAAAAAAGATGGGGTCTATCGTTTACATGCTTTTTATATTACTTTCAGAGGTTAATTCGTGTGTAGAGCTATCAAAAACATTGCGT
ATTTTCGGAATAAACATATCCCACGATACTATAAATCGAATTCTTTGGGATGAAGGAATTTCTCCTCAAGAGAGACTATTTAGCTACGTTAAAGATTTTA
TCACTTCCGACTATAACATTATCGTTATAGACGACTTTGTTATAGACAAAATTTACTCCAAATCAACAGAGTTTACCTATTATTGTTGGAGTAACCTACA
CAAACGAGTAGTTAAAGGCATACATATCGTTGATTGCATTGTTACAAATGGAAAGAACATCATTCCAATCGATTTTAGAGTCTATGATAAACAAAGAGAT
GGAAAGACAAAGAACGATTTATGCAGAGAAATAATATCATCTTTGGTGGAGAAAGGCCTAAATATTCGATATATCTGCTTTGATAGTTGGTATTCAAGCA
AAGAAAACTTAAAACTCATCGATAAGTTTGGTTTATTTTACCTCTGCAGGATTAAAAGAAATAGGAAGATAAAACTCTCCAAAAACGGAGAGTGGATTTC
GATTAAAGAACTTGGAGAAATTCCTAAGAGCGGCTTAATCGTTTATCTAAGGAAAGTGGGCTATGTCAAACTCTTCTGCCTTTCCAAAAACGGAAAGGCA
GTATATTATATAACGAATAACCTATTTATGGATTTCGAAGAATTCCAAGAGGTCAGAAACGCCTCTTGGAGAATCGAAGAATTCCACAGAGGGGTTAAAC
AGTGCTGCAATATCGGAAATTTCTTCGTTAGAAAGAGACTTCCAATATTGGGGCATATCTCGTTAGCCATGAGGGCTTTCTTTATTTTAGAGAGGATTAG
AATTGATAAAAAGATTACTTGGTATGAGTTTAGAAGAGAACTAAACCGAATAGCCGTTGGGAATGCTATAATCTCTTTATGTAAAGAAGCTGGTTTATTG
TTAATCTAAGTATTTAAATGTATTTGCGAAAGTCCTA
TTGGGATAATATGCTAAAAAAGATGGGGTCTATCGTTTACATGCTTTTTATATTACTTTCAGAGGTTAATTCGTGTGTAGAGCTATCAAAAACATTGCGT
ATTTTCGGAATAAACATATCCCACGATACTATAAATCGAATTCTTTGGGATGAAGGAATTTCTCCTCAAGAGAGACTATTTAGCTACGTTAAAGATTTTA
TCACTTCCGACTATAACATTATCGTTATAGACGACTTTGTTATAGACAAAATTTACTCCAAATCAACAGAGTTTACCTATTATTGTTGGAGTAACCTACA
CAAACGAGTAGTTAAAGGCATACATATCGTTGATTGCATTGTTACAAATGGAAAGAACATCATTCCAATCGATTTTAGAGTCTATGATAAACAAAGAGAT
GGAAAGACAAAGAACGATTTATGCAGAGAAATAATATCATCTTTGGTGGAGAAAGGCCTAAATATTCGATATATCTGCTTTGATAGTTGGTATTCAAGCA
AAGAAAACTTAAAACTCATCGATAAGTTTGGTTTATTTTACCTCTGCAGGATTAAAAGAAATAGGAAGATAAAACTCTCCAAAAACGGAGAGTGGATTTC
GATTAAAGAACTTGGAGAAATTCCTAAGAGCGGCTTAATCGTTTATCTAAGGAAAGTGGGCTATGTCAAACTCTTCTGCCTTTCCAAAAACGGAAAGGCA
GTATATTATATAACGAATAACCTATTTATGGATTTCGAAGAATTCCAAGAGGTCAGAAACGCCTCTTGGAGAATCGAAGAATTCCACAGAGGGGTTAAAC
AGTGCTGCAATATCGGAAATTTCTTCGTTAGAAAGAGACTTCCAATATTGGGGCATATCTCGTTAGCCATGAGGGCTTTCTTTATTTTAGAGAGGATTAG
AATTGATAAAAAGATTACTTGGTATGAGTTTAGAAGAGAACTAAACCGAATAGCCGTTGGGAATGCTATAATCTCTTTATGTAAAGAAGCTGGTTTATTG
TTAATCTAAGTATTTAAATGTATTTGCGAAAGTCCTA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
999 bp | 332 aa | 111 | 1109 | + | No |
Chemistry : DDE
ORF sequence :
MLKKMGSIVYMLFILLSEVNSCVELSKTLRIFGINISHDTINRILWDEGISPQERLFSYVKDFITSDYNIIVIDDFVIDKIYSKSTEFTYYCWSNLHKRV
VKGIHIVDCIVTNGKNIIPIDFRVYDKQRDGKTKNDLCREIISSLVEKGLNIRYICFDSWYSSKENLKLIDKFGLFYLCRIKRNRKIKLSKNGEWISIKE
LGEIPKSGLIVYLRKVGYVKLFCLSKNGKAVYYITNNLFMDFEEFQEVRNASWRIEEFHRGVKQCCNIGNFFVRKRLPILGHISLAMRAFFILERIRIDK
KITWYEFRRELNRIAVGNAIISLCKEAGLLLI
VKGIHIVDCIVTNGKNIIPIDFRVYDKQRDGKTKNDLCREIISSLVEKGLNIRYICFDSWYSSKENLKLIDKFGLFYLCRIKRNRKIKLSKNGEWISIKE
LGEIPKSGLIVYLRKVGYVKLFCLSKNGKAVYYITNNLFMDFEEFQEVRNASWRIEEFHRGVKQCCNIGNFFVRKRLPILGHISLAMRAFFILERIRIDK
KITWYEFRRELNRIAVGNAIISLCKEAGLLLI
Blast result :
Comments
ISMig1 is 58% aa similar to ISMesi2 and ISMhu9.
References
1] ISfinder annotation (2011).
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Chertkov,O., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sieprawska-Lupa,M., Whitman,W. and Woyke,T. (2011) Direct submission to GenBank.
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Chertkov,O., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sieprawska-Lupa,M., Whitman,W. and Woyke,T. (2011) Direct submission to GenBank.