ISMig1

  • Family IS701
  • Group ISAba11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_015562 ND Methanotorris igneus
Methanotorris igneus Kol 5
DNA section
IS Length : 1137 bp

Ends


IR Length : 30/36

IRL : TAGAACTTTCGCAAGTATATTTGAATATTTAATTATAATCACTAAATTAA
IRR : TAGGACTTTCGCAAATACATTTAAATACTTAGATTAACAATAAACCAGCT

Insertion site


Left flankDirect repeatRight flankDR Length
TGCAAAATAGTTAAATAATCTACGAT0
GCCTTTTCTTTTTAGACCTCTTTTTC0
ATTGTGTAATATCTCTTCTAATCAT0

DNA sequence

TAGAACTTTCGCAAGTATATTTGAATATTTAATTATAATCACTAAATTAAATATATCTATTGCAATCTTAATATCATTATTTCGAATAACAAAAATTGTT
TTGGGATAATATGCTAAAAAAGATGGGGTCTATCGTTTACATGCTTTTTATATTACTTTCAGAGGTTAATTCGTGTGTAGAGCTATCAAAAACATTGCGT
ATTTTCGGAATAAACATATCCCACGATACTATAAATCGAATTCTTTGGGATGAAGGAATTTCTCCTCAAGAGAGACTATTTAGCTACGTTAAAGATTTTA
TCACTTCCGACTATAACATTATCGTTATAGACGACTTTGTTATAGACAAAATTTACTCCAAATCAACAGAGTTTACCTATTATTGTTGGAGTAACCTACA
CAAACGAGTAGTTAAAGGCATACATATCGTTGATTGCATTGTTACAAATGGAAAGAACATCATTCCAATCGATTTTAGAGTCTATGATAAACAAAGAGAT
GGAAAGACAAAGAACGATTTATGCAGAGAAATAATATCATCTTTGGTGGAGAAAGGCCTAAATATTCGATATATCTGCTTTGATAGTTGGTATTCAAGCA
AAGAAAACTTAAAACTCATCGATAAGTTTGGTTTATTTTACCTCTGCAGGATTAAAAGAAATAGGAAGATAAAACTCTCCAAAAACGGAGAGTGGATTTC
GATTAAAGAACTTGGAGAAATTCCTAAGAGCGGCTTAATCGTTTATCTAAGGAAAGTGGGCTATGTCAAACTCTTCTGCCTTTCCAAAAACGGAAAGGCA
GTATATTATATAACGAATAACCTATTTATGGATTTCGAAGAATTCCAAGAGGTCAGAAACGCCTCTTGGAGAATCGAAGAATTCCACAGAGGGGTTAAAC
AGTGCTGCAATATCGGAAATTTCTTCGTTAGAAAGAGACTTCCAATATTGGGGCATATCTCGTTAGCCATGAGGGCTTTCTTTATTTTAGAGAGGATTAG
AATTGATAAAAAGATTACTTGGTATGAGTTTAGAAGAGAACTAAACCGAATAGCCGTTGGGAATGCTATAATCTCTTTATGTAAAGAAGCTGGTTTATTG
TTAATCTAAGTATTTAAATGTATTTGCGAAAGTCCTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
999 bp332 aa1111109+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLKKMGSIVYMLFILLSEVNSCVELSKTLRIFGINISHDTINRILWDEGISPQERLFSYVKDFITSDYNIIVIDDFVIDKIYSKSTEFTYYCWSNLHKRV
VKGIHIVDCIVTNGKNIIPIDFRVYDKQRDGKTKNDLCREIISSLVEKGLNIRYICFDSWYSSKENLKLIDKFGLFYLCRIKRNRKIKLSKNGEWISIKE
LGEIPKSGLIVYLRKVGYVKLFCLSKNGKAVYYITNNLFMDFEEFQEVRNASWRIEEFHRGVKQCCNIGNFFVRKRLPILGHISLAMRAFFILERIRIDK
KITWYEFRRELNRIAVGNAIISLCKEAGLLLI

 

Blast result :
Comments
ISMig1 is 58% aa similar to ISMesi2 and ISMhu9.
References
1] ISfinder annotation (2011).
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Chertkov,O., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sieprawska-Lupa,M., Whitman,W. and Woyke,T. (2011) Direct submission to GenBank.