ISMvi2

  • Family IS1202
  • Group ISAba32
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LN554852 ND Moritella viscosa
Moritella viscosa MVIS1
DNA section
IS Length : 1492 bp

Ends


IR Length : 21/27

IRL : TGTTAACCCAATATAGTAATGTCACATTTCCCCAACTTAGAGATGTCACA
IRR : TGTAAAAGCAAGTTAGAAATGTCACATAGTTTACCAAAGTAGAAATGTCA

Insertion site


Left flankDirect repeatRight flankDR Length
AAACCTGACATTTCTATCGGGGACCTACATTGATATTGCGCATTAGAGTCTTTA16
TTTTTATTATCGTTATGATGAGTGTGGATAATTTCACCCTTTTTTT16

DNA sequence

TGTTAACCCAATATAGTAATGTCACATTTCCCCAACTTAGAGATGTCACATTCTGATAGGATCTGTTCCATTAATAATCCTCTTCAGAGCTATGTGTCAT
GCTATTTGCTATGAGCCAAAAAGAATTAAATCGTGTTGATGTTATTCGTGACGTTTGTGAAAAGCGTTTAACCCAAGTAAATGCTTCAAATATCCTTAAC
TTAACGCGACGGCAGGTTCAGCGGTTAGTAAACAACTTTCGTAAAAATGGGGCGCAAGGGTTAGCCTCATTGAGAAGAGGAAAACCAAGTAATCGACAGT
TTTCACCTGCGTTTAAACAAAATGCACTGCGTATTATCAAAGATAAATACGCAGATTTTGGCCCTACCTTTGCAAATGAAAAGCTACTCGAACAGCACGG
TATTAAGCTTTCAGCAGAGACGTTACGTCACTGGATGATTGGTGAGGGCTTATGGAAATCCCGAGCAAAGCCTAAGAAAAAGACCTACCAGCCCAGGTAT
AGACGAGAATCTTTAGGTGAGCTTGTTCAGATTGATGGTTCACATCATGACTGGTTCGAAGGCCGCGCCGAAAAATGTTGTCTGCTGGTATTTATTGATG
ATGCCACCGGTAGATTAATGACATTACGCTTCAGTGAGGTAGAGTCAACATACGACTACATGAATGCGACGCGAGAATATATTGAGCAACATGGAAAGCC
AGTGGCTTTTTACAGTGACAAGCATTCCGTCTTTAGAATCAATAAGAAAGCGCCTCTTAGTGGTAATCAGATGACACAATACGGTCGTGCGTTGTATGAA
TTAAATATCGATTTAATTTGTGCTAACAGCTCTCAAGCTAAGGGGCGTGTTGAAAGGGCAAACAAAACCCTGCAAGACCGGCTAATCAAAGAAATGCGAC
TTGCAGGTATTGATTCAATGGAGCAAGCGAACGCATGGCTGCCTATTTTTATTGAAGATTTCAATCACCGCTTTGGTCGAGCACCGCATAGTTTAGAAGA
AGCACACCGCCTATTACGGGAAAGTTCAGAAGAGCTAGACGACATATTTGCGCGTCAAAAGACCCGTAAGGTATCGAACGCGTTAACATTGCAATACGAC
AAAGTGGTTTACCTGATAGAGCCTACGGATGCGACAGCGCGTTTAGCAGGTAAGAACGTCATGATATATGACTACCCGGATGGCACGTTGAGCATAAAGC
ATTGTGGTAAGGCATTGCCTTATCAAGTCTTCGATAAGCTGCGACAGGTGAATCAGGGGACTGTTGTTGATAATAAACGGTTGGGAGCAGCGTTGTCTTT
TGCTAAACGAAGTCAGGAAGAAAGAAATGACACGTTGGAGCGAACGAGAAGCGCGAAAACATTCAGCCGAACAGCACAAAAAAGAGCACGACAAATCAAT
CCTATTTTACGCGAATCACTAGAACCGGATAAATAACAAATGTGACATTTCTACTTTGGTAAACTATGTGACATTTCTAACTTGCTTTTACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1338 bp445 aa991436+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLFAMSQKELNRVDVIRDVCEKRLTQVNASNILNLTRRQVQRLVNNFRKNGAQGLASLRRGKPSNRQFSPAFKQNALRIIKDKYADFGPTFANEKLLEQH
GIKLSAETLRHWMIGEGLWKSRAKPKKKTYQPRYRRESLGELVQIDGSHHDWFEGRAEKCCLLVFIDDATGRLMTLRFSEVESTYDYMNATREYIEQHGK
PVAFYSDKHSVFRINKKAPLSGNQMTQYGRALYELNIDLICANSSQAKGRVERANKTLQDRLIKEMRLAGIDSMEQANAWLPIFIEDFNHRFGRAPHSLE
EAHRLLRESSEELDDIFARQKTRKVSNALTLQYDKVVYLIEPTDATARLAGKNVMIYDYPDGTLSIKHCGKALPYQVFDKLRQVNQGTVVDNKRLGAALS
FAKRSQEERNDTLERTRSAKTFSRTAQKRARQINPILRESLEPDK

 

Blast result :
Comments
ISMvi2 is 94% aa similar to ISPysp1.
References
1] Patricia Siguier(2020) Direct submission.
2] Hjerde,Erik. (2014) Direct GenBank submission.