ISOxba1
- Family IS1202
- Group ISAba32
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
SECW01000006 | ND | Oxalobacteraceae bacterium | Oxalobacteraceae bacterium isolate PMG_065 |
DNA section
IS Length : 1497 bp
Ends
IR Length : 15/24
IRL : TGTAGTGGCTAAACTAGAATGTCTTGAACTGGCCAAATCAGAATGTCTCA
IRR : TGTTCAAGCTATTTTCAAATGTCTCACTTCCGGCTATTTTCAAATGTCCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GACTATCATGGCTGA | TTGAATCTTAAAATGAAAA | 0 |
DNA sequence
TGTAGTGGCTAAACTAGAATGTCTTGAACTGGCCAAATCAGAATGTCTCACTGTGACCTGCGTGTTTAGGTTAAACGGCCCATTCTAGGCACTTCCTCAT
GTGTGGAGGTGCATCATGGCACGGTTCGCGAGCATTACCATGAGCATGCGCGACATTGATCGGCTGAAGGTTATTCAGGCAATTGTGGACGGTAATCTGA
CTGCATCGATAGCAGCAAATCGATTGCAACTCACCAAGCGCCAAGTCAATCGGCTGGTACTAAGATACCGCGCTGATGGCCCTGCAGGACTGATATCAAG
GCAACGCGGCCAGCCCGGACACCGTCAGCTTGCCGACGGCATAGCCGATATTGCGCTGGCAATCATCCGAGATCGATATCCAGATTTCGGTCCAACCCTG
GCTTGCGAGAAGCTGCGCGAACGGCATGGCATCGCATTAGCCAAGGAAACTGTTCGCACGCTCATGACCGACGCTGGGCTATGGATACCACGCAAGCAGC
GTCCAGCGTCGATCTACCAGCCACGTAATCGGCGCTCATGTGTGGGCGAACTGATCCAGATCGATGGCAGCGATCACCGCTGGTTTGAGGACCGGGCGCC
GGCCTGCACGCTGCTGGTGTACATAGATGATGCAACCAGCCGGCTCATGCAGCTGCATTTCACCTATTCGGAATCGACCTTCAGCTATTTCGAAGCTACC
CGTGCCTACCTGGAGCACTACGGCAAACCGCAGGCCTTCTACAGCGACAAGGCTGGCGTGTTCCGCGACAATCACAAGCAGAATGATCACGGTCCCGGTT
TTACGCAGTTCGGACGGGTGCTCTATGAGCTCAACATCGACATCTGGTGTGCCAATACCAGCCAGGCCAAAGGACGGGTAGAACGGGCCAATCTGACCTT
GCAGGACCGCCTGGTGAAGGAACTACGGCTCGAAGGCATTTCCAGCATGGCTGCCGCCAATGCCTATGTCCCCGCCTTCATGGCCGATTTCAACCGGCGC
TTTGCCAAGCCGCCCCGCAGCGATGTGGATGTGCATCGCCCAATTCGGCAGGACGAAGACCTTGACCGGATCTTCACGGTGCGGCAATTGCGCAAGGTTT
CGCATGTGCTCACGCTTCAATATGACAAGGCCATTTATCTGTTGGCGGACACACCGTTCAACCGCGCCCTGATCGGCAAATACGTCGATGTGTTCGACTA
TCCGGACGGCCGCATCGAGATCCGTGCTGACGGCACTACCCTGCCCTATGTGCGTTATGACCGCCTGCCGCAAGTCGATCAGGGCGCCATTGTGGAGAAC
AAGCGACTTGGCCACGCCCTGCAGGTTGCCAACCTGGTGCAGCAGCAGCGGGATAATCGGCGTAGCCACTCGGCGCCAGAAAGTTGGTGTTCCAGCCACC
CTTCCGCTACCGCGGCTACGTTAACGGTAAACCCAAAGCATTAAAACGGGACATTTGAAAATAGCCGGAAGTGAGACATTTGAAAATAGCTTGAACA
GTGTGGAGGTGCATCATGGCACGGTTCGCGAGCATTACCATGAGCATGCGCGACATTGATCGGCTGAAGGTTATTCAGGCAATTGTGGACGGTAATCTGA
CTGCATCGATAGCAGCAAATCGATTGCAACTCACCAAGCGCCAAGTCAATCGGCTGGTACTAAGATACCGCGCTGATGGCCCTGCAGGACTGATATCAAG
GCAACGCGGCCAGCCCGGACACCGTCAGCTTGCCGACGGCATAGCCGATATTGCGCTGGCAATCATCCGAGATCGATATCCAGATTTCGGTCCAACCCTG
GCTTGCGAGAAGCTGCGCGAACGGCATGGCATCGCATTAGCCAAGGAAACTGTTCGCACGCTCATGACCGACGCTGGGCTATGGATACCACGCAAGCAGC
GTCCAGCGTCGATCTACCAGCCACGTAATCGGCGCTCATGTGTGGGCGAACTGATCCAGATCGATGGCAGCGATCACCGCTGGTTTGAGGACCGGGCGCC
GGCCTGCACGCTGCTGGTGTACATAGATGATGCAACCAGCCGGCTCATGCAGCTGCATTTCACCTATTCGGAATCGACCTTCAGCTATTTCGAAGCTACC
CGTGCCTACCTGGAGCACTACGGCAAACCGCAGGCCTTCTACAGCGACAAGGCTGGCGTGTTCCGCGACAATCACAAGCAGAATGATCACGGTCCCGGTT
TTACGCAGTTCGGACGGGTGCTCTATGAGCTCAACATCGACATCTGGTGTGCCAATACCAGCCAGGCCAAAGGACGGGTAGAACGGGCCAATCTGACCTT
GCAGGACCGCCTGGTGAAGGAACTACGGCTCGAAGGCATTTCCAGCATGGCTGCCGCCAATGCCTATGTCCCCGCCTTCATGGCCGATTTCAACCGGCGC
TTTGCCAAGCCGCCCCGCAGCGATGTGGATGTGCATCGCCCAATTCGGCAGGACGAAGACCTTGACCGGATCTTCACGGTGCGGCAATTGCGCAAGGTTT
CGCATGTGCTCACGCTTCAATATGACAAGGCCATTTATCTGTTGGCGGACACACCGTTCAACCGCGCCCTGATCGGCAAATACGTCGATGTGTTCGACTA
TCCGGACGGCCGCATCGAGATCCGTGCTGACGGCACTACCCTGCCCTATGTGCGTTATGACCGCCTGCCGCAAGTCGATCAGGGCGCCATTGTGGAGAAC
AAGCGACTTGGCCACGCCCTGCAGGTTGCCAACCTGGTGCAGCAGCAGCGGGATAATCGGCGTAGCCACTCGGCGCCAGAAAGTTGGTGTTCCAGCCACC
CTTCCGCTACCGCGGCTACGTTAACGGTAAACCCAAAGCATTAAAACGGGACATTTGAAAATAGCCGGAAGTGAGACATTTGAAAATAGCTTGAACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1329 bp | 442 aa | 116 | 1444 | + | No |
Chemistry : DDE
ORF sequence :
MARFASITMSMRDIDRLKVIQAIVDGNLTASIAANRLQLTKRQVNRLVLRYRADGPAGLISRQRGQPGHRQLADGIADIALAIIRDRYPDFGPTLACEKL
RERHGIALAKETVRTLMTDAGLWIPRKQRPASIYQPRNRRSCVGELIQIDGSDHRWFEDRAPACTLLVYIDDATSRLMQLHFTYSESTFSYFEATRAYLE
HYGKPQAFYSDKAGVFRDNHKQNDHGPGFTQFGRVLYELNIDIWCANTSQAKGRVERANLTLQDRLVKELRLEGISSMAAANAYVPAFMADFNRRFAKPP
RSDVDVHRPIRQDEDLDRIFTVRQLRKVSHVLTLQYDKAIYLLADTPFNRALIGKYVDVFDYPDGRIEIRADGTTLPYVRYDRLPQVDQGAIVENKRLGH
ALQVANLVQQQRDNRRSHSAPESWCSSHPSATAATLTVNPKH
RERHGIALAKETVRTLMTDAGLWIPRKQRPASIYQPRNRRSCVGELIQIDGSDHRWFEDRAPACTLLVYIDDATSRLMQLHFTYSESTFSYFEATRAYLE
HYGKPQAFYSDKAGVFRDNHKQNDHGPGFTQFGRVLYELNIDIWCANTSQAKGRVERANLTLQDRLVKELRLEGISSMAAANAYVPAFMADFNRRFAKPP
RSDVDVHRPIRQDEDLDRIFTVRQLRKVSHVLTLQYDKAIYLLADTPFNRALIGKYVDVFDYPDGRIEIRADGTTLPYVRYDRLPQVDQGAIVENKRLGH
ALQVANLVQQQRDNRRSHSAPESWCSSHPSATAATLTVNPKH
Blast result :
Comments
ISOxba1 is 83% aa similar to ISNvsp1.
References
1] Patricia Siguier (2020) Direct submission.
2] Crombie,A.T., Larke-Mejia,N.L., Emery,H., Dawson,R., Pratscher,J., Murphy,G.P., McGenity,T.J. and Murrell,J.C. (2018) Proc. Natl. Acad. Sci. U.S.A. 115 (51), 13081-13086.
2] Crombie,A.T., Larke-Mejia,N.L., Emery,H., Dawson,R., Pratscher,J., Murphy,G.P., McGenity,T.J. and Murrell,J.C. (2018) Proc. Natl. Acad. Sci. U.S.A. 115 (51), 13081-13086.