ISOxba1

  • Family IS1202
  • Group ISAba32
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
SECW01000006 ND Oxalobacteraceae bacterium
Oxalobacteraceae bacterium isolate PMG_065
DNA section
IS Length : 1497 bp

Ends


IR Length : 15/24

IRL : TGTAGTGGCTAAACTAGAATGTCTTGAACTGGCCAAATCAGAATGTCTCA
IRR : TGTTCAAGCTATTTTCAAATGTCTCACTTCCGGCTATTTTCAAATGTCCC

Insertion site


Left flankDirect repeatRight flankDR Length
GACTATCATGGCTGATTGAATCTTAAAATGAAAA0

DNA sequence

TGTAGTGGCTAAACTAGAATGTCTTGAACTGGCCAAATCAGAATGTCTCACTGTGACCTGCGTGTTTAGGTTAAACGGCCCATTCTAGGCACTTCCTCAT
GTGTGGAGGTGCATCATGGCACGGTTCGCGAGCATTACCATGAGCATGCGCGACATTGATCGGCTGAAGGTTATTCAGGCAATTGTGGACGGTAATCTGA
CTGCATCGATAGCAGCAAATCGATTGCAACTCACCAAGCGCCAAGTCAATCGGCTGGTACTAAGATACCGCGCTGATGGCCCTGCAGGACTGATATCAAG
GCAACGCGGCCAGCCCGGACACCGTCAGCTTGCCGACGGCATAGCCGATATTGCGCTGGCAATCATCCGAGATCGATATCCAGATTTCGGTCCAACCCTG
GCTTGCGAGAAGCTGCGCGAACGGCATGGCATCGCATTAGCCAAGGAAACTGTTCGCACGCTCATGACCGACGCTGGGCTATGGATACCACGCAAGCAGC
GTCCAGCGTCGATCTACCAGCCACGTAATCGGCGCTCATGTGTGGGCGAACTGATCCAGATCGATGGCAGCGATCACCGCTGGTTTGAGGACCGGGCGCC
GGCCTGCACGCTGCTGGTGTACATAGATGATGCAACCAGCCGGCTCATGCAGCTGCATTTCACCTATTCGGAATCGACCTTCAGCTATTTCGAAGCTACC
CGTGCCTACCTGGAGCACTACGGCAAACCGCAGGCCTTCTACAGCGACAAGGCTGGCGTGTTCCGCGACAATCACAAGCAGAATGATCACGGTCCCGGTT
TTACGCAGTTCGGACGGGTGCTCTATGAGCTCAACATCGACATCTGGTGTGCCAATACCAGCCAGGCCAAAGGACGGGTAGAACGGGCCAATCTGACCTT
GCAGGACCGCCTGGTGAAGGAACTACGGCTCGAAGGCATTTCCAGCATGGCTGCCGCCAATGCCTATGTCCCCGCCTTCATGGCCGATTTCAACCGGCGC
TTTGCCAAGCCGCCCCGCAGCGATGTGGATGTGCATCGCCCAATTCGGCAGGACGAAGACCTTGACCGGATCTTCACGGTGCGGCAATTGCGCAAGGTTT
CGCATGTGCTCACGCTTCAATATGACAAGGCCATTTATCTGTTGGCGGACACACCGTTCAACCGCGCCCTGATCGGCAAATACGTCGATGTGTTCGACTA
TCCGGACGGCCGCATCGAGATCCGTGCTGACGGCACTACCCTGCCCTATGTGCGTTATGACCGCCTGCCGCAAGTCGATCAGGGCGCCATTGTGGAGAAC
AAGCGACTTGGCCACGCCCTGCAGGTTGCCAACCTGGTGCAGCAGCAGCGGGATAATCGGCGTAGCCACTCGGCGCCAGAAAGTTGGTGTTCCAGCCACC
CTTCCGCTACCGCGGCTACGTTAACGGTAAACCCAAAGCATTAAAACGGGACATTTGAAAATAGCCGGAAGTGAGACATTTGAAAATAGCTTGAACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1329 bp442 aa1161444+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MARFASITMSMRDIDRLKVIQAIVDGNLTASIAANRLQLTKRQVNRLVLRYRADGPAGLISRQRGQPGHRQLADGIADIALAIIRDRYPDFGPTLACEKL
RERHGIALAKETVRTLMTDAGLWIPRKQRPASIYQPRNRRSCVGELIQIDGSDHRWFEDRAPACTLLVYIDDATSRLMQLHFTYSESTFSYFEATRAYLE
HYGKPQAFYSDKAGVFRDNHKQNDHGPGFTQFGRVLYELNIDIWCANTSQAKGRVERANLTLQDRLVKELRLEGISSMAAANAYVPAFMADFNRRFAKPP
RSDVDVHRPIRQDEDLDRIFTVRQLRKVSHVLTLQYDKAIYLLADTPFNRALIGKYVDVFDYPDGRIEIRADGTTLPYVRYDRLPQVDQGAIVENKRLGH
ALQVANLVQQQRDNRRSHSAPESWCSSHPSATAATLTVNPKH

 

Blast result :
Comments
ISOxba1 is 83% aa similar to ISNvsp1.
References
1] Patricia Siguier (2020) Direct submission.
2] Crombie,A.T., Larke-Mejia,N.L., Emery,H., Dawson,R., Pratscher,J., Murphy,G.P., McGenity,T.J. and Murrell,J.C. (2018) Proc. Natl. Acad. Sci. U.S.A. 115 (51), 13081-13086.