ISOmba1

  • Family IS1202
  • Group ISTde1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
QNCN01000149 ND Omnitrophica bacterium
Omnitrophica bacterium isolate B13_G9
Candidatus Omnitrophica bacterium isolate B13_G9
DNA section
IS Length : 1450 bp

Ends


IR Length : 44/58

IRL : TGTAACCCCAATATGATAATGTCCTATTTAGCCAAAATAAAAATGTCCTC
IRR : TGTCAAGCCAATTTAAAAATGTCCGGTTTTTACCAAAATAAAAATGTCCG

Insertion site


Left flankDirect repeatRight flankDR Length
ATTTAGCCAAAATAAAAAACCTCCTTTATTTTCC0

DNA sequence

TGTAACCCCAATATGATAATGTCCTATTTAGCCAAAATAAAAATGTCCTCTTTTAAGCCTGCTATAATACTCTTTTTGAAAGGAGGGTATTATGGCAGAA
AAGGACATTATCACAATGACCCAGAAAGAATTAAAACGTTTGCATATAATCAAACAAGTTTTAGAAAAGAAATTAAAGCAAATTGAAGCAGCAGAAATGC
TTGGTTTAAGTTCAAGACAGATACGTAGAATAGTTAAGAGGATAAGGGAGGAGGGGGAGAAAGGAATAATTCATAGATTGCGAGGCCAACCTTCTCATAG
GAGGTTGCCCAAGCAGATAAAGGATAAGGTAATAGCCTTATACAGAAAAAAATACCAGGGATTTGGGCCGACGTTAGCAAGTGAAAAACTTTTGGAAATA
GATAAGATTAAAATAAGTGATGAAACTTTACGACTCTGGCTTATTGAGAAAGAAGAATGGCAGAAACAACGCAGGCACAAAAAGCATAGGAGTTGGCGCC
AACGTAAACACTACTTTGGAGAAATGATACAAATGGATGGTTCCCATCACGACTGGTTTGAAGGAAGAGGAGAAAAGTGTGTGCTTATAGGCTATATTGA
TGATGCTACAAGCATAAGATTTGCTCGTTTCTACGCCTATGAAGGCACAATGCCGGCCTTTGATAGCCTTAAACGTTATATAAAGCGCTATGGTATACCC
AAAAGCCTCTATTTAGACAAACATACTACCTATAAATCAACAGCCAAGCCTACAATTGAAGATGAGTTAAATAACAGAAGACACCTAAGCCAGTTTGAGA
GGGCAGCCCAGGAGTTAGGAATAGAAATAATCCACGCCAATTCTCCTCAGGCAAAAGGTAGAGCCGAACGCTCATTTAAAACATACCAGGATAGATTAAT
AAAAGAGATGCGCTTAAGAGGTATAAGCACAATAGAAGAGGCAAATAAATTTTTAAAAGAGTTTTTGCCTAAGCATAATAAGAGATTCAGCATTAAGCCT
ATAAAAGAAGGCAACTTACATAGACCTTTATCTAAAGGTATAGACCTTGATGCGATCTTATGCATAAAGACAGAGCATCCTGTAAGAGGAGATTTTACTA
TAGTCCACAACAAAAAGCTCTACCAGATACTAGATAAGACCATTGCCAAAAAAGTAACAGTTCAGGAAAGAATAAATGGAAAGATGTATATTGTTTATAA
AGGCAGGAGACTAAGATATAAAGCAATAGCTGCAAGACCACCCAAAGAAAGACCTGAACCTAAACCCAGAAAGATTTACCGGCCTCCTATGGAGCATCCC
TGGAAGAGACCATTGTATGAGAGAAGATTGGCAAAAGAAAAAGCTCTTTTACAAAGCAAAAAAGATACAGAAGAATTAGCATTAGTTAAAGTCTAAAAAC
CGGACATTTTTATTTTGGTAAAAACCGGACATTTTTAAATTGGCTTGACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1305 bp434 aa921396+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAEKDIITMTQKELKRLHIIKQVLEKKLKQIEAAEMLGLSSRQIRRIVKRIREEGEKGIIHRLRGQPSHRRLPKQIKDKVIALYRKKYQGFGPTLASEKL
LEIDKIKISDETLRLWLIEKEEWQKQRRHKKHRSWRQRKHYFGEMIQMDGSHHDWFEGRGEKCVLIGYIDDATSIRFARFYAYEGTMPAFDSLKRYIKRY
GIPKSLYLDKHTTYKSTAKPTIEDELNNRRHLSQFERAAQELGIEIIHANSPQAKGRAERSFKTYQDRLIKEMRLRGISTIEEANKFLKEFLPKHNKRFS
IKPIKEGNLHRPLSKGIDLDAILCIKTEHPVRGDFTIVHNKKLYQILDKTIAKKVTVQERINGKMYIVYKGRRLRYKAIAARPPKERPEPKPRKIYRPPM
EHPWKRPLYERRLAKEKALLQSKKDTEELALVKV

 

Blast result :
Comments
ISOmba1 is 72% aa similar to ISNitsp1.
References
1] Patricia Siguier (2020) Direct submission.
2] Dombrowski,N., Teske,A. and Baker,B.J. (2018) Direct GenBank submission.