ISOmba1
- Family IS1202
- Group ISTde1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
QNCN01000149 | ND | Omnitrophica bacterium | Omnitrophica bacterium isolate B13_G9 Candidatus Omnitrophica bacterium isolate B13_G9 |
DNA section
IS Length : 1450 bp
Ends
IR Length : 44/58
IRL : TGTAACCCCAATATGATAATGTCCTATTTAGCCAAAATAAAAATGTCCTC
IRR : TGTCAAGCCAATTTAAAAATGTCCGGTTTTTACCAAAATAAAAATGTCCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATTTAGCCAAAATAAAAA | ACCTCCTTTATTTTCC | 0 |
DNA sequence
TGTAACCCCAATATGATAATGTCCTATTTAGCCAAAATAAAAATGTCCTCTTTTAAGCCTGCTATAATACTCTTTTTGAAAGGAGGGTATTATGGCAGAA
AAGGACATTATCACAATGACCCAGAAAGAATTAAAACGTTTGCATATAATCAAACAAGTTTTAGAAAAGAAATTAAAGCAAATTGAAGCAGCAGAAATGC
TTGGTTTAAGTTCAAGACAGATACGTAGAATAGTTAAGAGGATAAGGGAGGAGGGGGAGAAAGGAATAATTCATAGATTGCGAGGCCAACCTTCTCATAG
GAGGTTGCCCAAGCAGATAAAGGATAAGGTAATAGCCTTATACAGAAAAAAATACCAGGGATTTGGGCCGACGTTAGCAAGTGAAAAACTTTTGGAAATA
GATAAGATTAAAATAAGTGATGAAACTTTACGACTCTGGCTTATTGAGAAAGAAGAATGGCAGAAACAACGCAGGCACAAAAAGCATAGGAGTTGGCGCC
AACGTAAACACTACTTTGGAGAAATGATACAAATGGATGGTTCCCATCACGACTGGTTTGAAGGAAGAGGAGAAAAGTGTGTGCTTATAGGCTATATTGA
TGATGCTACAAGCATAAGATTTGCTCGTTTCTACGCCTATGAAGGCACAATGCCGGCCTTTGATAGCCTTAAACGTTATATAAAGCGCTATGGTATACCC
AAAAGCCTCTATTTAGACAAACATACTACCTATAAATCAACAGCCAAGCCTACAATTGAAGATGAGTTAAATAACAGAAGACACCTAAGCCAGTTTGAGA
GGGCAGCCCAGGAGTTAGGAATAGAAATAATCCACGCCAATTCTCCTCAGGCAAAAGGTAGAGCCGAACGCTCATTTAAAACATACCAGGATAGATTAAT
AAAAGAGATGCGCTTAAGAGGTATAAGCACAATAGAAGAGGCAAATAAATTTTTAAAAGAGTTTTTGCCTAAGCATAATAAGAGATTCAGCATTAAGCCT
ATAAAAGAAGGCAACTTACATAGACCTTTATCTAAAGGTATAGACCTTGATGCGATCTTATGCATAAAGACAGAGCATCCTGTAAGAGGAGATTTTACTA
TAGTCCACAACAAAAAGCTCTACCAGATACTAGATAAGACCATTGCCAAAAAAGTAACAGTTCAGGAAAGAATAAATGGAAAGATGTATATTGTTTATAA
AGGCAGGAGACTAAGATATAAAGCAATAGCTGCAAGACCACCCAAAGAAAGACCTGAACCTAAACCCAGAAAGATTTACCGGCCTCCTATGGAGCATCCC
TGGAAGAGACCATTGTATGAGAGAAGATTGGCAAAAGAAAAAGCTCTTTTACAAAGCAAAAAAGATACAGAAGAATTAGCATTAGTTAAAGTCTAAAAAC
CGGACATTTTTATTTTGGTAAAAACCGGACATTTTTAAATTGGCTTGACA
AAGGACATTATCACAATGACCCAGAAAGAATTAAAACGTTTGCATATAATCAAACAAGTTTTAGAAAAGAAATTAAAGCAAATTGAAGCAGCAGAAATGC
TTGGTTTAAGTTCAAGACAGATACGTAGAATAGTTAAGAGGATAAGGGAGGAGGGGGAGAAAGGAATAATTCATAGATTGCGAGGCCAACCTTCTCATAG
GAGGTTGCCCAAGCAGATAAAGGATAAGGTAATAGCCTTATACAGAAAAAAATACCAGGGATTTGGGCCGACGTTAGCAAGTGAAAAACTTTTGGAAATA
GATAAGATTAAAATAAGTGATGAAACTTTACGACTCTGGCTTATTGAGAAAGAAGAATGGCAGAAACAACGCAGGCACAAAAAGCATAGGAGTTGGCGCC
AACGTAAACACTACTTTGGAGAAATGATACAAATGGATGGTTCCCATCACGACTGGTTTGAAGGAAGAGGAGAAAAGTGTGTGCTTATAGGCTATATTGA
TGATGCTACAAGCATAAGATTTGCTCGTTTCTACGCCTATGAAGGCACAATGCCGGCCTTTGATAGCCTTAAACGTTATATAAAGCGCTATGGTATACCC
AAAAGCCTCTATTTAGACAAACATACTACCTATAAATCAACAGCCAAGCCTACAATTGAAGATGAGTTAAATAACAGAAGACACCTAAGCCAGTTTGAGA
GGGCAGCCCAGGAGTTAGGAATAGAAATAATCCACGCCAATTCTCCTCAGGCAAAAGGTAGAGCCGAACGCTCATTTAAAACATACCAGGATAGATTAAT
AAAAGAGATGCGCTTAAGAGGTATAAGCACAATAGAAGAGGCAAATAAATTTTTAAAAGAGTTTTTGCCTAAGCATAATAAGAGATTCAGCATTAAGCCT
ATAAAAGAAGGCAACTTACATAGACCTTTATCTAAAGGTATAGACCTTGATGCGATCTTATGCATAAAGACAGAGCATCCTGTAAGAGGAGATTTTACTA
TAGTCCACAACAAAAAGCTCTACCAGATACTAGATAAGACCATTGCCAAAAAAGTAACAGTTCAGGAAAGAATAAATGGAAAGATGTATATTGTTTATAA
AGGCAGGAGACTAAGATATAAAGCAATAGCTGCAAGACCACCCAAAGAAAGACCTGAACCTAAACCCAGAAAGATTTACCGGCCTCCTATGGAGCATCCC
TGGAAGAGACCATTGTATGAGAGAAGATTGGCAAAAGAAAAAGCTCTTTTACAAAGCAAAAAAGATACAGAAGAATTAGCATTAGTTAAAGTCTAAAAAC
CGGACATTTTTATTTTGGTAAAAACCGGACATTTTTAAATTGGCTTGACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1305 bp | 434 aa | 92 | 1396 | + | No |
Chemistry : DDE
ORF sequence :
MAEKDIITMTQKELKRLHIIKQVLEKKLKQIEAAEMLGLSSRQIRRIVKRIREEGEKGIIHRLRGQPSHRRLPKQIKDKVIALYRKKYQGFGPTLASEKL
LEIDKIKISDETLRLWLIEKEEWQKQRRHKKHRSWRQRKHYFGEMIQMDGSHHDWFEGRGEKCVLIGYIDDATSIRFARFYAYEGTMPAFDSLKRYIKRY
GIPKSLYLDKHTTYKSTAKPTIEDELNNRRHLSQFERAAQELGIEIIHANSPQAKGRAERSFKTYQDRLIKEMRLRGISTIEEANKFLKEFLPKHNKRFS
IKPIKEGNLHRPLSKGIDLDAILCIKTEHPVRGDFTIVHNKKLYQILDKTIAKKVTVQERINGKMYIVYKGRRLRYKAIAARPPKERPEPKPRKIYRPPM
EHPWKRPLYERRLAKEKALLQSKKDTEELALVKV
LEIDKIKISDETLRLWLIEKEEWQKQRRHKKHRSWRQRKHYFGEMIQMDGSHHDWFEGRGEKCVLIGYIDDATSIRFARFYAYEGTMPAFDSLKRYIKRY
GIPKSLYLDKHTTYKSTAKPTIEDELNNRRHLSQFERAAQELGIEIIHANSPQAKGRAERSFKTYQDRLIKEMRLRGISTIEEANKFLKEFLPKHNKRFS
IKPIKEGNLHRPLSKGIDLDAILCIKTEHPVRGDFTIVHNKKLYQILDKTIAKKVTVQERINGKMYIVYKGRRLRYKAIAARPPKERPEPKPRKIYRPPM
EHPWKRPLYERRLAKEKALLQSKKDTEELALVKV
Blast result :
Comments
ISOmba1 is 72% aa similar to ISNitsp1.
References
1] Patricia Siguier (2020) Direct submission.
2] Dombrowski,N., Teske,A. and Baker,B.J. (2018) Direct GenBank submission.
2] Dombrowski,N., Teske,A. and Baker,B.J. (2018) Direct GenBank submission.