ISMyba1

  • Family IS1202
  • Group ISTde1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
QZKR01000069 ND Myxococcales bacterium
Myxococcales bacterium isolate SURF_8
DNA section
IS Length : 1496 bp

Ends


IR Length : 41/53

IRL : TGTCGTTAGCACCTGATATGTCCTGTAGTCATAGCAAATGAAATGTCCGC
IRR : TGTCAATAGCACAACGAGTTGTCCGGTGTTCATAGCTAATGAAATGTCCG

Insertion site


Left flankDirect repeatRight flankDR Length
CGAGGCTGGGCGGCAAGATCAATCCCGGGGCAGATCAATTCCGGGGGCTGT17

DNA sequence

TGTCGTTAGCACCTGATATGTCCTGTAGTCATAGCAAATGAAATGTCCGCTTTTTCGGATTTCGGCCATGTAGACCTAGGAGGAGGTCGGCATGGAACGC
AAGTATCCGGAATCCGCGGTGAGGCGGGCGATGACGGTTCAAGAGGTGATATTGAAAGCGGTGGGCGGCGAGCTGAAGTGGATCGAAGCGGCGGATATTT
TGGGGGTGACCCCCCGGACGATACGGCGGATGCACGCGTCGTACAAGGCGCATGGTCTTCCGGGTTTGATCGATCGTCGTCGAGGGTCTCCTTCCCCCCG
GCGGGCGGCGTTTGCGGATGTGGAGCAGGTTCTGCGGCTGTACCGGGAAAAATATCGGGATTTCAACGTGAAGCATTTCCACGAGAAGTTGGTGGAGAAG
CACGGTCTGAGTTACGGCTATACGTGGGTGAAGCTGGTGCTGCAAAAGGCGGGGATGGTGAAGCGGAGCAAGGGTCGCGGCGGGCATCGGCAGCGTCGGG
AACGTCGCGCGTTGTTTGGTCAGATGCTGCACCTGGACGGGAGCGAGCACGAGTGGCTGAGCTTGCGTCCCGGGGAGCGTCAGGAGTTGCTGTTGGTGGT
GGACGATGCGACAGGTCGGAATCTGGCGGGGCGACTGGTGGAGGCGGAAACGACGAAGAGCTGTTTGGGGATCATGCGAGACGTGGTGGAGGCGTATGGG
ATTCCGGCGCAGTTGTACACGGACCGGAACAGCGTGTACTGGGTGACGGAGAAAGGGAGGGGCCGTGTGGACAAAGAGAATTTGACGCAATTCGGTCGGG
CGATGGAGCAGCTGGGCGTGGAGATGATCGCGGCTTGCTCGCCGCAAGCGCGTGGGCGCTCGGAGCGCTGGAATGCGACGTGGCAGAACCGACTGGTCAA
CGAGTTGCGGGCGGAGGGGATCGAGACGGTGGAAGCGGCCAACCGGTATATCGGGGACGTCTTTCTTCCCGAGATGAACCGGCGCTTTGCGGTGGAAGCC
AAAGCGTCCGGCAGCGCCTTCGTGCGCGCGCGGGGCGCGGACTTGGAGCGGATTTTCTCGGTGCATCACGAATCGCGGACGGTGGCCAACGACAACACGG
TGCGGGTCAAGGGCCGGGTGCTTCAAATCGAGCCGTCGCGGTTTCGGGAAACGTTTGCGCGGTGCACGGTGGATGTGCTGGAGCACCTGGACGGGACGTA
CTCGATCATTTGGAAAGGGCGCGCGATCGGGCGCTACGACGCGGACGGACAGACGCTTGGGGGCGCTGCCCCCAAACCCCCGAAGTTTAGCGCCGTGACG
ACCAGGGAAGAGGGGAAAAGAAAAGGCGGAAAACCCGAGTCTCCGCCTCTTCCCCGGTCGCCAGCGGGCGCTCGGGTCGATCTTCACCGGAGCCCTATCC
TCCCGCAGGCTCCAGAAGCTTAAGAGAAACGGCGATCTTTAACAACCGGACATTTCATTAGCTATGAACACCGGACAACTCGTTGTGCTATTGACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1332 bp443 aa921423+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MERKYPESAVRRAMTVQEVILKAVGGELKWIEAADILGVTPRTIRRMHASYKAHGLPGLIDRRRGSPSPRRAAFADVEQVLRLYREKYRDFNVKHFHEKL
VEKHGLSYGYTWVKLVLQKAGMVKRSKGRGGHRQRRERRALFGQMLHLDGSEHEWLSLRPGERQELLLVVDDATGRNLAGRLVEAETTKSCLGIMRDVVE
AYGIPAQLYTDRNSVYWVTEKGRGRVDKENLTQFGRAMEQLGVEMIAACSPQARGRSERWNATWQNRLVNELRAEGIETVEAANRYIGDVFLPEMNRRFA
VEAKASGSAFVRARGADLERIFSVHHESRTVANDNTVRVKGRVLQIEPSRFRETFARCTVDVLEHLDGTYSIIWKGRAIGRYDADGQTLGGAAPKPPKFS
AVTTREEGKRKGGKPESPPLPRSPAGARVDLHRSPILPQAPEA

 

Blast result :
Comments
ISMyba1 is 56% aa similar to ISCARN112.
References
1] Patricia Siguier (2020) Direct submission.
2] Momper,L., Jungbluth,S.P., Lee,M.D. and Amend,J.P. (2017) ISME J 11 (10), 2319-2333.