ISMtsp23
- Family IS1202
- Group ISAba32
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
RCIG01000015 | ND | Methylobacterium sp. | Methylobacterium sp. DB1607 15 |
DNA section
IS Length : 1521 bp
Ends
IR Length : 17/27
IRL : TGTAGGCGCAAAGTTAGAATGTCCCACCTGGGCCAAGTAGGAATGTCACA
IRR : TGTTGCAACCGGGTTGAACTGTCACATGGGCTAGCAAAGTAGAACTGTCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AACTTATGCGAATG | GCACT | TGTAGGCGCAAATTTTG | 5 |
DNA sequence
TGTAGGCGCAAAGTTAGAATGTCCCACCTGGGCCAAGTAGGAATGTCACACTCCTCTGTCCGCGGCACGGACGTGGGAGGTTGGCGTGGGATGGGTGGTG
ATGAGCGAGCGCGAGTTGCAGCGGGTCGAGGTGCTCTCCGCCGTGCTAGCCGGCCAGCAGACCGTCACGGCAGCGGCGCGCCTTCTCGGGATCAGCCGGC
GACAGATGCACCGGCTTCTCAAAGGCTACCGAGCCGAGGGCGCCTCGGCCATCCGCCACAAGGGCCGTGGTCGGCGCTCGAACCGCGCCTTGAGCGAAGG
GCTGCGCGATCTCGCGCTGAGCTACGTCCGTGAGCATTACGCGGATTTCGGCCCTACCCTCGCCGCGGAGATGCTGGGCGAGCATCATCAACTCACGGTC
TCGCGGGAGACGCTGCGCGGCTGGATGAGCGCGACCGGGCTCTGGCGCTCGCGCCGACAGCGGTTCAGCGTGCATCAACCGCGGCTGAGGCGCGAGTGCC
TGGGCGAGTTGGTGCAGATCGACGGCTCGGAGCATCGTTGGTTCGAGGATCGCGGTCCGCAATGCACCCTGCTGGTGTTCATCGACGACGCGACAGGCCG
CCTGATGCAGTTGCGCTTCGTCAGTTCCGAGAGCGCCTTCAGCTACTTCGAGGCGCTGGAAGGCTATCTGGCCGCCCACGGCCGGCCGGTCGCGTTCTAC
TCGGACAAGCACGCGGTCTTCCGCGTAGCCAAGACCGAGGCACGCGGCGGTCAAGGCATGACGCAGTTCGGTCGAGCGCTGTCGGAACTCGGGATCGAGA
TCCTGTGCGCCAACTCCAGCCAAGCCAAGGGGCGAGTCGAGCGTGTAAACCGGACCCTGCAGGATCGGCTGGTCAAGGAACTGCGCTTGGCGGGGATCTC
GGATCGGGAGGCGGGCAACCGCTATCTGCCGGGGTTCATGGCTCGCTTCAACACGCGCTTTGCCAGCGCTGCGGCGCGGGCGGACGACCTGCACCGGCCG
TTGAACCTGCCGCCGGATCGGCTTGCCGACGTGCTGGCATGGCGCGAGCAGCGCCATGTCGGGCGCGAGCTTGCACTCTCCTACGAGCGCCGACGGATCA
TCCTGGACGACACCGAGCTGACGCGGGGGCTCGCGGGCCGGTACGTCGATACCTACAAGTTCGCCGACGGACGGCTGGAGGTGCGATGGAAGGGCCTGTC
GCTGCCTTACCGCGCCTTCGACAAGGACCAGCGCGTGACGCACGCGGCGATCGTGGAGAACAAGCGGCTGTCGGAGGTGCTGGCCTGGGTCAAGGAGCGG
CAGGACGCGATGCGTCCTCCGAAGGTGAAGAGCAACAGCGAGAAGGGCGGATATGTGAAGCGGGGACGGGCGCCGGCCCTGCGGCCCGCCCATGGCGGGG
CTGCTGCGATGCAGGAGGTCTCCGCAGCCCCGCCACGGGCTCCGGCGGAGCAGGGCCGGTCAGCGGTCCTGTGACAGTTCTACTTTGCTAGCCCATGTGA
CAGTTCAACCCGGTTGCAACA
ATGAGCGAGCGCGAGTTGCAGCGGGTCGAGGTGCTCTCCGCCGTGCTAGCCGGCCAGCAGACCGTCACGGCAGCGGCGCGCCTTCTCGGGATCAGCCGGC
GACAGATGCACCGGCTTCTCAAAGGCTACCGAGCCGAGGGCGCCTCGGCCATCCGCCACAAGGGCCGTGGTCGGCGCTCGAACCGCGCCTTGAGCGAAGG
GCTGCGCGATCTCGCGCTGAGCTACGTCCGTGAGCATTACGCGGATTTCGGCCCTACCCTCGCCGCGGAGATGCTGGGCGAGCATCATCAACTCACGGTC
TCGCGGGAGACGCTGCGCGGCTGGATGAGCGCGACCGGGCTCTGGCGCTCGCGCCGACAGCGGTTCAGCGTGCATCAACCGCGGCTGAGGCGCGAGTGCC
TGGGCGAGTTGGTGCAGATCGACGGCTCGGAGCATCGTTGGTTCGAGGATCGCGGTCCGCAATGCACCCTGCTGGTGTTCATCGACGACGCGACAGGCCG
CCTGATGCAGTTGCGCTTCGTCAGTTCCGAGAGCGCCTTCAGCTACTTCGAGGCGCTGGAAGGCTATCTGGCCGCCCACGGCCGGCCGGTCGCGTTCTAC
TCGGACAAGCACGCGGTCTTCCGCGTAGCCAAGACCGAGGCACGCGGCGGTCAAGGCATGACGCAGTTCGGTCGAGCGCTGTCGGAACTCGGGATCGAGA
TCCTGTGCGCCAACTCCAGCCAAGCCAAGGGGCGAGTCGAGCGTGTAAACCGGACCCTGCAGGATCGGCTGGTCAAGGAACTGCGCTTGGCGGGGATCTC
GGATCGGGAGGCGGGCAACCGCTATCTGCCGGGGTTCATGGCTCGCTTCAACACGCGCTTTGCCAGCGCTGCGGCGCGGGCGGACGACCTGCACCGGCCG
TTGAACCTGCCGCCGGATCGGCTTGCCGACGTGCTGGCATGGCGCGAGCAGCGCCATGTCGGGCGCGAGCTTGCACTCTCCTACGAGCGCCGACGGATCA
TCCTGGACGACACCGAGCTGACGCGGGGGCTCGCGGGCCGGTACGTCGATACCTACAAGTTCGCCGACGGACGGCTGGAGGTGCGATGGAAGGGCCTGTC
GCTGCCTTACCGCGCCTTCGACAAGGACCAGCGCGTGACGCACGCGGCGATCGTGGAGAACAAGCGGCTGTCGGAGGTGCTGGCCTGGGTCAAGGAGCGG
CAGGACGCGATGCGTCCTCCGAAGGTGAAGAGCAACAGCGAGAAGGGCGGATATGTGAAGCGGGGACGGGCGCCGGCCCTGCGGCCCGCCCATGGCGGGG
CTGCTGCGATGCAGGAGGTCTCCGCAGCCCCGCCACGGGCTCCGGCGGAGCAGGGCCGGTCAGCGGTCCTGTGACAGTTCTACTTTGCTAGCCCATGTGA
CAGTTCAACCCGGTTGCAACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1379 bp | 462 aa | 86 | 1464 | + | No |
Chemistry : DDE
ORF sequence :
MGWVVMSERELQRVEVLSAVLAGQQTVTAAARLLGISRRQMHRLLKGYRAEGASAIRHKGRGRRSNRALSEGLRDLALSYVREHYADFGPTLAAEMLGEH
HQLTVSRETLRGWMSATGLWRSRRQRFSVHQPRLRRECLGELVQIDGSEHRWFEDRGPQCTLLVFIDDATGRLMQLRFVSSESAFSYFEALEGYLAAHGR
PVAFYSDKHAVFRVAKTEARGGQGMTQFGRALSELGIEILCANSSQAKGRVERVNRTLQDRLVKELRLAGISDREAGNRYLPGFMARFNTRFASAAARAD
DLHRPLNLPPDRLADVLAWREQRHVGRELALSYERRRIILDDTELTRGLAGRYVDTYKFADGRLEVRWKGLSLPYRAFDKDQRVTHAAIVENKRLSEVLA
WVKERQDAMRPPKVKSNSEKGGYVKRGRAPALRPAHGGAAAMQEVSAAPPRAPAEQGRSAVL
HQLTVSRETLRGWMSATGLWRSRRQRFSVHQPRLRRECLGELVQIDGSEHRWFEDRGPQCTLLVFIDDATGRLMQLRFVSSESAFSYFEALEGYLAAHGR
PVAFYSDKHAVFRVAKTEARGGQGMTQFGRALSELGIEILCANSSQAKGRVERVNRTLQDRLVKELRLAGISDREAGNRYLPGFMARFNTRFASAAARAD
DLHRPLNLPPDRLADVLAWREQRHVGRELALSYERRRIILDDTELTRGLAGRYVDTYKFADGRLEVRWKGLSLPYRAFDKDQRVTHAAIVENKRLSEVLA
WVKERQDAMRPPKVKSNSEKGGYVKRGRAPALRPAHGGAAAMQEVSAAPPRAPAEQGRSAVL
Blast result :
Comments
ISMtsp23 is 82% aa similar to ISNam1.
References
1] Patricia Siguier (2020) Direct submission.
2] Jung,H.S. and Jeon,C.O. (2018) Direct GenBank submission.
2] Jung,H.S. and Jeon,C.O. (2018) Direct GenBank submission.