ISMtsp23

  • Family IS1202
  • Group ISAba32
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
RCIG01000015 ND Methylobacterium sp.
Methylobacterium sp. DB1607 15
DNA section
IS Length : 1521 bp

Ends


IR Length : 17/27

IRL : TGTAGGCGCAAAGTTAGAATGTCCCACCTGGGCCAAGTAGGAATGTCACA
IRR : TGTTGCAACCGGGTTGAACTGTCACATGGGCTAGCAAAGTAGAACTGTCA

Insertion site


Left flankDirect repeatRight flankDR Length
AACTTATGCGAATGGCACTTGTAGGCGCAAATTTTG5

DNA sequence

TGTAGGCGCAAAGTTAGAATGTCCCACCTGGGCCAAGTAGGAATGTCACACTCCTCTGTCCGCGGCACGGACGTGGGAGGTTGGCGTGGGATGGGTGGTG
ATGAGCGAGCGCGAGTTGCAGCGGGTCGAGGTGCTCTCCGCCGTGCTAGCCGGCCAGCAGACCGTCACGGCAGCGGCGCGCCTTCTCGGGATCAGCCGGC
GACAGATGCACCGGCTTCTCAAAGGCTACCGAGCCGAGGGCGCCTCGGCCATCCGCCACAAGGGCCGTGGTCGGCGCTCGAACCGCGCCTTGAGCGAAGG
GCTGCGCGATCTCGCGCTGAGCTACGTCCGTGAGCATTACGCGGATTTCGGCCCTACCCTCGCCGCGGAGATGCTGGGCGAGCATCATCAACTCACGGTC
TCGCGGGAGACGCTGCGCGGCTGGATGAGCGCGACCGGGCTCTGGCGCTCGCGCCGACAGCGGTTCAGCGTGCATCAACCGCGGCTGAGGCGCGAGTGCC
TGGGCGAGTTGGTGCAGATCGACGGCTCGGAGCATCGTTGGTTCGAGGATCGCGGTCCGCAATGCACCCTGCTGGTGTTCATCGACGACGCGACAGGCCG
CCTGATGCAGTTGCGCTTCGTCAGTTCCGAGAGCGCCTTCAGCTACTTCGAGGCGCTGGAAGGCTATCTGGCCGCCCACGGCCGGCCGGTCGCGTTCTAC
TCGGACAAGCACGCGGTCTTCCGCGTAGCCAAGACCGAGGCACGCGGCGGTCAAGGCATGACGCAGTTCGGTCGAGCGCTGTCGGAACTCGGGATCGAGA
TCCTGTGCGCCAACTCCAGCCAAGCCAAGGGGCGAGTCGAGCGTGTAAACCGGACCCTGCAGGATCGGCTGGTCAAGGAACTGCGCTTGGCGGGGATCTC
GGATCGGGAGGCGGGCAACCGCTATCTGCCGGGGTTCATGGCTCGCTTCAACACGCGCTTTGCCAGCGCTGCGGCGCGGGCGGACGACCTGCACCGGCCG
TTGAACCTGCCGCCGGATCGGCTTGCCGACGTGCTGGCATGGCGCGAGCAGCGCCATGTCGGGCGCGAGCTTGCACTCTCCTACGAGCGCCGACGGATCA
TCCTGGACGACACCGAGCTGACGCGGGGGCTCGCGGGCCGGTACGTCGATACCTACAAGTTCGCCGACGGACGGCTGGAGGTGCGATGGAAGGGCCTGTC
GCTGCCTTACCGCGCCTTCGACAAGGACCAGCGCGTGACGCACGCGGCGATCGTGGAGAACAAGCGGCTGTCGGAGGTGCTGGCCTGGGTCAAGGAGCGG
CAGGACGCGATGCGTCCTCCGAAGGTGAAGAGCAACAGCGAGAAGGGCGGATATGTGAAGCGGGGACGGGCGCCGGCCCTGCGGCCCGCCCATGGCGGGG
CTGCTGCGATGCAGGAGGTCTCCGCAGCCCCGCCACGGGCTCCGGCGGAGCAGGGCCGGTCAGCGGTCCTGTGACAGTTCTACTTTGCTAGCCCATGTGA
CAGTTCAACCCGGTTGCAACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1379 bp462 aa861464+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGWVVMSERELQRVEVLSAVLAGQQTVTAAARLLGISRRQMHRLLKGYRAEGASAIRHKGRGRRSNRALSEGLRDLALSYVREHYADFGPTLAAEMLGEH
HQLTVSRETLRGWMSATGLWRSRRQRFSVHQPRLRRECLGELVQIDGSEHRWFEDRGPQCTLLVFIDDATGRLMQLRFVSSESAFSYFEALEGYLAAHGR
PVAFYSDKHAVFRVAKTEARGGQGMTQFGRALSELGIEILCANSSQAKGRVERVNRTLQDRLVKELRLAGISDREAGNRYLPGFMARFNTRFASAAARAD
DLHRPLNLPPDRLADVLAWREQRHVGRELALSYERRRIILDDTELTRGLAGRYVDTYKFADGRLEVRWKGLSLPYRAFDKDQRVTHAAIVENKRLSEVLA
WVKERQDAMRPPKVKSNSEKGGYVKRGRAPALRPAHGGAAAMQEVSAAPPRAPAEQGRSAVL

 

Blast result :
Comments
ISMtsp23 is 82% aa similar to ISNam1.
References
1] Patricia Siguier (2020) Direct submission.
2] Jung,H.S. and Jeon,C.O. (2018) Direct GenBank submission.