ISMssp1
- Family IS1202
- Group IS1202
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NFLY01000064 | ND | Massilimicrobiota sp. | Massilimicrobiota sp. An105 |
DNA section
IS Length : 1552 bp
Ends
IR Length : 18/27
IRL : TCTGATTCAAATATGATAATGTCTCAATGTATCAAGATTGATAATGTCCC
IRR : TGTCAAGCAATTTTGAAAATGTCCTAAAAAAAGTTAAACATTAGCACCGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CACGTAACTGTCAA | TATTGTTATGATAAGAGTATGTAAAAAA | GAGGTGAAGCATATATG | 28 |
DNA sequence
TCTGATTCAAATATGATAATGTCTCAATGTATCAAGATTGATAATGTCCCAACATGTTGGGACATTATCAAATAATCCTGTTATACTATAAACCTCACTT
TTTATTGGAGGTTTGATGATGAGAAAGGTTGAATTAAGAATGAATGAATTAAAAAAATATGAAATCATTAAAAAACTTGTTGAAACGAATGGCAACAAGA
AACGTGCTGCCATCAAGATTGGCTGTACTGTTCGCACTGTGAACAGACTCATACTCAAATATAAAAATGGTGGCAAGGCTGCCTTTATTCACGGCAATCG
TGGCAGATGTCCTTCTACCACTATCCCTCTTGATATGAGAAATAGAATTGTCTCTTCCTATATCAATGATTATTCCGATACAAATTTCACTCATTATTGC
GAAATCGTTAAGGAGGATCTTGACATCAGTATATCCGATACCACTCTTAACAAATGGCTCAGAGAGGAGAATGTCCTTTCCCCTAAGGCTAGAAGAAAGA
CCAAGAAACTCATGAAGAAAAAGCTTAAGCAGAAGCTTGATCAGACTTCTTCTCAGAAGGTTAAGAATCAGATCAAGATGGCCATCGCTTCCGTCGATGA
TGAAAATGCTCATCCAAGAAGGTCAAGATGCAAATACTTCGGTGAGATGATTCAGATGGACGCCTCTTCTTTCGAATGGATTCCTGGTCATATATGGCAT
CTTCATCTCGCTGTTGATGATTCTACTGGCACTGTGGTTGGGGCCTATTTTGATACTCAGGAAACCTTGAATGGCTATTACAATGTTTTCTTTCAAATCT
TGACTGGTTATGGTATCCCTGCCATGTTCTATACTGACAGGCGTACTGTCTTTGAATACAAAAGAAAAACCAAGGCTTTCGATGACGAGGATACCTTCAC
CCAATTCTCCTACGCATGCCATAACCTTGGTGTTGATATAAAGACCACAAGCATCGCTCAGGCCAAAGGCAGAATCGAGAGACTCAATCAGACCTTCCAG
TCTCGATTGCCTGTTGAATTGAGACGTGCTCATGTGTCTTCCATAGAGGAAGCCAACGAATTTTTAAACTCCTACCTAAAAAAATTCAATGATCAGTTCG
CTCTACACCTTAATACTACACAATCGGTATTTGAAAAGCAACCATCAATGGAAAAAATTAATTCAACACTGGCTGTTCTTTCACCGAGAAAGATTGATTC
TGGTCACAGCATCAGATACAAGAATAAGTTCTATATTCCTGTTTCTGATAGAGGAGTGCCATACTATCTGAAAAAGAAAACAGACTGCATGGTCATCGAG
TCATTTGATGGTGGGCTATATGTCAATGTATTGGACGAACTATTCATCATGAAGGAGATACTAGAGCATGAAAGGCATTCAAAGGAGTTTGATGGTGAAA
TCAAAGAAAGCAAGCCAAAAAAGCAGTACATTCCGCCAATGGAACATCCTTGGAGAAATGATGACTTTCTTGGCTTTCTAGCAAGACAAAAGCATCGTAC
AAACGGTGCTAATGTTTAACTTTTTTTAGGACATTTTCAAAATTGCTTGACA
TTTATTGGAGGTTTGATGATGAGAAAGGTTGAATTAAGAATGAATGAATTAAAAAAATATGAAATCATTAAAAAACTTGTTGAAACGAATGGCAACAAGA
AACGTGCTGCCATCAAGATTGGCTGTACTGTTCGCACTGTGAACAGACTCATACTCAAATATAAAAATGGTGGCAAGGCTGCCTTTATTCACGGCAATCG
TGGCAGATGTCCTTCTACCACTATCCCTCTTGATATGAGAAATAGAATTGTCTCTTCCTATATCAATGATTATTCCGATACAAATTTCACTCATTATTGC
GAAATCGTTAAGGAGGATCTTGACATCAGTATATCCGATACCACTCTTAACAAATGGCTCAGAGAGGAGAATGTCCTTTCCCCTAAGGCTAGAAGAAAGA
CCAAGAAACTCATGAAGAAAAAGCTTAAGCAGAAGCTTGATCAGACTTCTTCTCAGAAGGTTAAGAATCAGATCAAGATGGCCATCGCTTCCGTCGATGA
TGAAAATGCTCATCCAAGAAGGTCAAGATGCAAATACTTCGGTGAGATGATTCAGATGGACGCCTCTTCTTTCGAATGGATTCCTGGTCATATATGGCAT
CTTCATCTCGCTGTTGATGATTCTACTGGCACTGTGGTTGGGGCCTATTTTGATACTCAGGAAACCTTGAATGGCTATTACAATGTTTTCTTTCAAATCT
TGACTGGTTATGGTATCCCTGCCATGTTCTATACTGACAGGCGTACTGTCTTTGAATACAAAAGAAAAACCAAGGCTTTCGATGACGAGGATACCTTCAC
CCAATTCTCCTACGCATGCCATAACCTTGGTGTTGATATAAAGACCACAAGCATCGCTCAGGCCAAAGGCAGAATCGAGAGACTCAATCAGACCTTCCAG
TCTCGATTGCCTGTTGAATTGAGACGTGCTCATGTGTCTTCCATAGAGGAAGCCAACGAATTTTTAAACTCCTACCTAAAAAAATTCAATGATCAGTTCG
CTCTACACCTTAATACTACACAATCGGTATTTGAAAAGCAACCATCAATGGAAAAAATTAATTCAACACTGGCTGTTCTTTCACCGAGAAAGATTGATTC
TGGTCACAGCATCAGATACAAGAATAAGTTCTATATTCCTGTTTCTGATAGAGGAGTGCCATACTATCTGAAAAAGAAAACAGACTGCATGGTCATCGAG
TCATTTGATGGTGGGCTATATGTCAATGTATTGGACGAACTATTCATCATGAAGGAGATACTAGAGCATGAAAGGCATTCAAAGGAGTTTGATGGTGAAA
TCAAAGAAAGCAAGCCAAAAAAGCAGTACATTCCGCCAATGGAACATCCTTGGAGAAATGATGACTTTCTTGGCTTTCTAGCAAGACAAAAGCATCGTAC
AAACGGTGCTAATGTTTAACTTTTTTTAGGACATTTTCAAAATTGCTTGACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1380 bp | 459 aa | 140 | 1519 | + | No |
Chemistry : DDE
ORF sequence :
MNELKKYEIIKKLVETNGNKKRAAIKIGCTVRTVNRLILKYKNGGKAAFIHGNRGRCPSTTIPLDMRNRIVSSYINDYSDTNFTHYCEIVKEDLDISISD
TTLNKWLREENVLSPKARRKTKKLMKKKLKQKLDQTSSQKVKNQIKMAIASVDDENAHPRRSRCKYFGEMIQMDASSFEWIPGHIWHLHLAVDDSTGTVV
GAYFDTQETLNGYYNVFFQILTGYGIPAMFYTDRRTVFEYKRKTKAFDDEDTFTQFSYACHNLGVDIKTTSIAQAKGRIERLNQTFQSRLPVELRRAHVS
SIEEANEFLNSYLKKFNDQFALHLNTTQSVFEKQPSMEKINSTLAVLSPRKIDSGHSIRYKNKFYIPVSDRGVPYYLKKKTDCMVIESFDGGLYVNVLDE
LFIMKEILEHERHSKEFDGEIKESKPKKQYIPPMEHPWRNDDFLGFLARQKHRTNGANV
TTLNKWLREENVLSPKARRKTKKLMKKKLKQKLDQTSSQKVKNQIKMAIASVDDENAHPRRSRCKYFGEMIQMDASSFEWIPGHIWHLHLAVDDSTGTVV
GAYFDTQETLNGYYNVFFQILTGYGIPAMFYTDRRTVFEYKRKTKAFDDEDTFTQFSYACHNLGVDIKTTSIAQAKGRIERLNQTFQSRLPVELRRAHVS
SIEEANEFLNSYLKKFNDQFALHLNTTQSVFEKQPSMEKINSTLAVLSPRKIDSGHSIRYKNKFYIPVSDRGVPYYLKKKTDCMVIESFDGGLYVNVLDE
LFIMKEILEHERHSKEFDGEIKESKPKKQYIPPMEHPWRNDDFLGFLARQKHRTNGANV
Blast result :
Comments
ISMssp1 is 71% aa similar to ISCpu1.
References
1] Patricia Siguier (2020) Direct submission.
2] Medvecky,M., Cejkova,D., Polansky,O., Karasova,D., Kubasova,T., Cizek,A. and Rychlik,I. (2018) BMC Genomics 19 (1), 561.
2] Medvecky,M., Cejkova,D., Polansky,O., Karasova,D., Kubasova,T., Cizek,A. and Rychlik,I. (2018) BMC Genomics 19 (1), 561.