ISMssp1

  • Family IS1202
  • Group IS1202
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NFLY01000064 ND Massilimicrobiota sp.
Massilimicrobiota sp. An105
DNA section
IS Length : 1552 bp

Ends


IR Length : 18/27

IRL : TCTGATTCAAATATGATAATGTCTCAATGTATCAAGATTGATAATGTCCC
IRR : TGTCAAGCAATTTTGAAAATGTCCTAAAAAAAGTTAAACATTAGCACCGT

Insertion site


Left flankDirect repeatRight flankDR Length
CACGTAACTGTCAATATTGTTATGATAAGAGTATGTAAAAAAGAGGTGAAGCATATATG28

DNA sequence

TCTGATTCAAATATGATAATGTCTCAATGTATCAAGATTGATAATGTCCCAACATGTTGGGACATTATCAAATAATCCTGTTATACTATAAACCTCACTT
TTTATTGGAGGTTTGATGATGAGAAAGGTTGAATTAAGAATGAATGAATTAAAAAAATATGAAATCATTAAAAAACTTGTTGAAACGAATGGCAACAAGA
AACGTGCTGCCATCAAGATTGGCTGTACTGTTCGCACTGTGAACAGACTCATACTCAAATATAAAAATGGTGGCAAGGCTGCCTTTATTCACGGCAATCG
TGGCAGATGTCCTTCTACCACTATCCCTCTTGATATGAGAAATAGAATTGTCTCTTCCTATATCAATGATTATTCCGATACAAATTTCACTCATTATTGC
GAAATCGTTAAGGAGGATCTTGACATCAGTATATCCGATACCACTCTTAACAAATGGCTCAGAGAGGAGAATGTCCTTTCCCCTAAGGCTAGAAGAAAGA
CCAAGAAACTCATGAAGAAAAAGCTTAAGCAGAAGCTTGATCAGACTTCTTCTCAGAAGGTTAAGAATCAGATCAAGATGGCCATCGCTTCCGTCGATGA
TGAAAATGCTCATCCAAGAAGGTCAAGATGCAAATACTTCGGTGAGATGATTCAGATGGACGCCTCTTCTTTCGAATGGATTCCTGGTCATATATGGCAT
CTTCATCTCGCTGTTGATGATTCTACTGGCACTGTGGTTGGGGCCTATTTTGATACTCAGGAAACCTTGAATGGCTATTACAATGTTTTCTTTCAAATCT
TGACTGGTTATGGTATCCCTGCCATGTTCTATACTGACAGGCGTACTGTCTTTGAATACAAAAGAAAAACCAAGGCTTTCGATGACGAGGATACCTTCAC
CCAATTCTCCTACGCATGCCATAACCTTGGTGTTGATATAAAGACCACAAGCATCGCTCAGGCCAAAGGCAGAATCGAGAGACTCAATCAGACCTTCCAG
TCTCGATTGCCTGTTGAATTGAGACGTGCTCATGTGTCTTCCATAGAGGAAGCCAACGAATTTTTAAACTCCTACCTAAAAAAATTCAATGATCAGTTCG
CTCTACACCTTAATACTACACAATCGGTATTTGAAAAGCAACCATCAATGGAAAAAATTAATTCAACACTGGCTGTTCTTTCACCGAGAAAGATTGATTC
TGGTCACAGCATCAGATACAAGAATAAGTTCTATATTCCTGTTTCTGATAGAGGAGTGCCATACTATCTGAAAAAGAAAACAGACTGCATGGTCATCGAG
TCATTTGATGGTGGGCTATATGTCAATGTATTGGACGAACTATTCATCATGAAGGAGATACTAGAGCATGAAAGGCATTCAAAGGAGTTTGATGGTGAAA
TCAAAGAAAGCAAGCCAAAAAAGCAGTACATTCCGCCAATGGAACATCCTTGGAGAAATGATGACTTTCTTGGCTTTCTAGCAAGACAAAAGCATCGTAC
AAACGGTGCTAATGTTTAACTTTTTTTAGGACATTTTCAAAATTGCTTGACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1380 bp459 aa1401519+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNELKKYEIIKKLVETNGNKKRAAIKIGCTVRTVNRLILKYKNGGKAAFIHGNRGRCPSTTIPLDMRNRIVSSYINDYSDTNFTHYCEIVKEDLDISISD
TTLNKWLREENVLSPKARRKTKKLMKKKLKQKLDQTSSQKVKNQIKMAIASVDDENAHPRRSRCKYFGEMIQMDASSFEWIPGHIWHLHLAVDDSTGTVV
GAYFDTQETLNGYYNVFFQILTGYGIPAMFYTDRRTVFEYKRKTKAFDDEDTFTQFSYACHNLGVDIKTTSIAQAKGRIERLNQTFQSRLPVELRRAHVS
SIEEANEFLNSYLKKFNDQFALHLNTTQSVFEKQPSMEKINSTLAVLSPRKIDSGHSIRYKNKFYIPVSDRGVPYYLKKKTDCMVIESFDGGLYVNVLDE
LFIMKEILEHERHSKEFDGEIKESKPKKQYIPPMEHPWRNDDFLGFLARQKHRTNGANV

 

Blast result :
Comments
ISMssp1 is 71% aa similar to ISCpu1.
References
1] Patricia Siguier (2020) Direct submission.
2] Medvecky,M., Cejkova,D., Polansky,O., Karasova,D., Kubasova,T., Cizek,A. and Rychlik,I. (2018) BMC Genomics 19 (1), 561.