ISMahy1

  • Family IS1202
  • Group ISTde1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AP019537 ND Marinobacter hydrocarbonoclasticus
Marinobacter hydrocarbonoclasticus YB03
DNA section
IS Length : 1432 bp

Ends


IR Length : 24/28

IRL : TGTTAGCCCAAAGCAGTAATGTCCCCTTCGTCCAATACTAAAATGTCCCC
IRR : TGTCAACCCAAAACAGAAATGTCCCCTTTTGAGCCATTCAGAAATGTCCC

Insertion site


Left flankDirect repeatRight flankDR Length
CATATTGGGGCAATATGCAGGCCTCAGTGGACTTTGTGGAT17

DNA sequence

TGTTAGCCCAAAGCAGTAATGTCCCCTTCGTCCAATACTAAAATGTCCCCTTTTGATTCAGGAGCAGGGGATGGCGAAGGAGCACATTACAATGAGCCGA
AAAGAAGTCGATCGCCTGAACGTGATTCAGTCGGTACTCAGCAAGCAACTCACTCAAGCTCAAGCCGCCAAACAGTTGAGCCTCTGCATCCGTCAGATTA
AGCGACTGGTCAAGCGCTATCGTGAGCAGGGAGCAGCAGGCCTGGTGTCCGGTCACCGCGGTAAGCGACCGAACAATGCCATTGAGGCATCCGTACGCGA
GAAAGCCTTGTCGCTGATCCGTGAGCACTACAGCGATTTTGGTCCCACCCTCGCCAGCGAGAAGCTGGCTCAGCGACACAGCCTGGTACTCTCTGCCGAG
ACCCTGCGCCAATGGATGATTGCTGAAGAGCTGTGGGTCACCAAACGACGCAAGGCCGCTCGCATCCATCAGCGCCGCCCACGGCGTCCCTGCCGCGGCG
AGCTCGTTCAGATTGATGGATCACCCCATGACTGGTTCGAAGGACGCGCCCCGCGCTGTACGTTGATCGTATTTATTGATGATGCCACCGGCGAGCTGCT
GGCCCTGCGCTTTGTACCCTCCGAGACCACCCAATCCTACATGGAGACACTGCAGACGTATCTCACCACACATGGCCGCCCCGTGGCCCTGTACTCTGAT
AAGCACACGGTATTCCGGATTAACAACCCGGAGCGTGAAGGCGAACTGACCCAGTTCTCTCGCGCCCTCAAAACCCTCGATATTGAGGCGATCCATGCCA
ATACCCCACAAGCTAAAGGTCGGGTCGAGCGTGCCAACAAGACCCTGCAGGACCGGCTGGTCAAAGAGCTGCGCTTACAGGGTATATCCGATATCGAAGC
CGCCAACGACTTCCTGCCGGGCTTCATGACGCTGTACAACGACCGCTTTGCAGTCCCGCCTCAGAACCCTCTTGATGCGCACCGCGAGGTCTTACACTCA
CCCGAAGAACTGGACCTTATCCTGAGCCTGCACCATCAACGCAAGCTGTCCAAAAACCTCACCCTGCAGTTCAAAAACCGTGAATATCAGTTGCTGGCAA
AGGGGCAGGGATATGCAATGCGAGGCGCCACCCTGACCGTATGCGAGGCGTTTGATGGCACGTTGACCCTGTTCTACAAAGGGCATGTCATGGCCTACAG
ACTGCTGTCTGAAGGCGAGCCACCTACACCGCTCGATGATGAGAAAAGCGTCCAGCATCGGGTAGATCAGGCCAAGCAGACACAGAAAGCCCGGCCGGCT
TACAAGCCTGCACCGGACCATCCCTGGAGAAAGTCAGCGCGCTTCACTGAACCCTCTCAGCACACAACCTGAGCCAGCAAAGGGGACATTTCTGAATGGC
TCAAAAGGGGACATTTCTGTTTTGGGTTGACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1281 bp426 aa921372+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSRKEVDRLNVIQSVLSKQLTQAQAAKQLSLCIRQIKRLVKRYREQGAAGLVSGHRGKRPNNAIEASVREKALSLIREHYSDFGPTLASEKLAQRHSLVL
SAETLRQWMIAEELWVTKRRKAARIHQRRPRRPCRGELVQIDGSPHDWFEGRAPRCTLIVFIDDATGELLALRFVPSETTQSYMETLQTYLTTHGRPVAL
YSDKHTVFRINNPEREGELTQFSRALKTLDIEAIHANTPQAKGRVERANKTLQDRLVKELRLQGISDIEAANDFLPGFMTLYNDRFAVPPQNPLDAHREV
LHSPEELDLILSLHHQRKLSKNLTLQFKNREYQLLAKGQGYAMRGATLTVCEAFDGTLTLFYKGHVMAYRLLSEGEPPTPLDDEKSVQHRVDQAKQTQKA
RPAYKPAPDHPWRKSARFTEPSQHTT

 

Blast result :
Comments
ISMahy1 is 75% aa similar to ISEsa1.
References
1] Patricia Siguier (2020) Direct submission.
2] Azam,A.H., Yuk,S.R., Kamarisima,K., Miyanaga,K. and Tanji,Y. (2019) Direct GenBank submission.