ISMahy1
- Family IS1202
- Group ISTde1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AP019537 | ND | Marinobacter hydrocarbonoclasticus | Marinobacter hydrocarbonoclasticus YB03 |
DNA section
IS Length : 1432 bp
Ends
IR Length : 24/28
IRL : TGTTAGCCCAAAGCAGTAATGTCCCCTTCGTCCAATACTAAAATGTCCCC
IRR : TGTCAACCCAAAACAGAAATGTCCCCTTTTGAGCCATTCAGAAATGTCCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CATATTGGGGCAA | TATGCAGGCCTCAGTGG | ACTTTGTGGAT | 17 |
DNA sequence
TGTTAGCCCAAAGCAGTAATGTCCCCTTCGTCCAATACTAAAATGTCCCCTTTTGATTCAGGAGCAGGGGATGGCGAAGGAGCACATTACAATGAGCCGA
AAAGAAGTCGATCGCCTGAACGTGATTCAGTCGGTACTCAGCAAGCAACTCACTCAAGCTCAAGCCGCCAAACAGTTGAGCCTCTGCATCCGTCAGATTA
AGCGACTGGTCAAGCGCTATCGTGAGCAGGGAGCAGCAGGCCTGGTGTCCGGTCACCGCGGTAAGCGACCGAACAATGCCATTGAGGCATCCGTACGCGA
GAAAGCCTTGTCGCTGATCCGTGAGCACTACAGCGATTTTGGTCCCACCCTCGCCAGCGAGAAGCTGGCTCAGCGACACAGCCTGGTACTCTCTGCCGAG
ACCCTGCGCCAATGGATGATTGCTGAAGAGCTGTGGGTCACCAAACGACGCAAGGCCGCTCGCATCCATCAGCGCCGCCCACGGCGTCCCTGCCGCGGCG
AGCTCGTTCAGATTGATGGATCACCCCATGACTGGTTCGAAGGACGCGCCCCGCGCTGTACGTTGATCGTATTTATTGATGATGCCACCGGCGAGCTGCT
GGCCCTGCGCTTTGTACCCTCCGAGACCACCCAATCCTACATGGAGACACTGCAGACGTATCTCACCACACATGGCCGCCCCGTGGCCCTGTACTCTGAT
AAGCACACGGTATTCCGGATTAACAACCCGGAGCGTGAAGGCGAACTGACCCAGTTCTCTCGCGCCCTCAAAACCCTCGATATTGAGGCGATCCATGCCA
ATACCCCACAAGCTAAAGGTCGGGTCGAGCGTGCCAACAAGACCCTGCAGGACCGGCTGGTCAAAGAGCTGCGCTTACAGGGTATATCCGATATCGAAGC
CGCCAACGACTTCCTGCCGGGCTTCATGACGCTGTACAACGACCGCTTTGCAGTCCCGCCTCAGAACCCTCTTGATGCGCACCGCGAGGTCTTACACTCA
CCCGAAGAACTGGACCTTATCCTGAGCCTGCACCATCAACGCAAGCTGTCCAAAAACCTCACCCTGCAGTTCAAAAACCGTGAATATCAGTTGCTGGCAA
AGGGGCAGGGATATGCAATGCGAGGCGCCACCCTGACCGTATGCGAGGCGTTTGATGGCACGTTGACCCTGTTCTACAAAGGGCATGTCATGGCCTACAG
ACTGCTGTCTGAAGGCGAGCCACCTACACCGCTCGATGATGAGAAAAGCGTCCAGCATCGGGTAGATCAGGCCAAGCAGACACAGAAAGCCCGGCCGGCT
TACAAGCCTGCACCGGACCATCCCTGGAGAAAGTCAGCGCGCTTCACTGAACCCTCTCAGCACACAACCTGAGCCAGCAAAGGGGACATTTCTGAATGGC
TCAAAAGGGGACATTTCTGTTTTGGGTTGACA
AAAGAAGTCGATCGCCTGAACGTGATTCAGTCGGTACTCAGCAAGCAACTCACTCAAGCTCAAGCCGCCAAACAGTTGAGCCTCTGCATCCGTCAGATTA
AGCGACTGGTCAAGCGCTATCGTGAGCAGGGAGCAGCAGGCCTGGTGTCCGGTCACCGCGGTAAGCGACCGAACAATGCCATTGAGGCATCCGTACGCGA
GAAAGCCTTGTCGCTGATCCGTGAGCACTACAGCGATTTTGGTCCCACCCTCGCCAGCGAGAAGCTGGCTCAGCGACACAGCCTGGTACTCTCTGCCGAG
ACCCTGCGCCAATGGATGATTGCTGAAGAGCTGTGGGTCACCAAACGACGCAAGGCCGCTCGCATCCATCAGCGCCGCCCACGGCGTCCCTGCCGCGGCG
AGCTCGTTCAGATTGATGGATCACCCCATGACTGGTTCGAAGGACGCGCCCCGCGCTGTACGTTGATCGTATTTATTGATGATGCCACCGGCGAGCTGCT
GGCCCTGCGCTTTGTACCCTCCGAGACCACCCAATCCTACATGGAGACACTGCAGACGTATCTCACCACACATGGCCGCCCCGTGGCCCTGTACTCTGAT
AAGCACACGGTATTCCGGATTAACAACCCGGAGCGTGAAGGCGAACTGACCCAGTTCTCTCGCGCCCTCAAAACCCTCGATATTGAGGCGATCCATGCCA
ATACCCCACAAGCTAAAGGTCGGGTCGAGCGTGCCAACAAGACCCTGCAGGACCGGCTGGTCAAAGAGCTGCGCTTACAGGGTATATCCGATATCGAAGC
CGCCAACGACTTCCTGCCGGGCTTCATGACGCTGTACAACGACCGCTTTGCAGTCCCGCCTCAGAACCCTCTTGATGCGCACCGCGAGGTCTTACACTCA
CCCGAAGAACTGGACCTTATCCTGAGCCTGCACCATCAACGCAAGCTGTCCAAAAACCTCACCCTGCAGTTCAAAAACCGTGAATATCAGTTGCTGGCAA
AGGGGCAGGGATATGCAATGCGAGGCGCCACCCTGACCGTATGCGAGGCGTTTGATGGCACGTTGACCCTGTTCTACAAAGGGCATGTCATGGCCTACAG
ACTGCTGTCTGAAGGCGAGCCACCTACACCGCTCGATGATGAGAAAAGCGTCCAGCATCGGGTAGATCAGGCCAAGCAGACACAGAAAGCCCGGCCGGCT
TACAAGCCTGCACCGGACCATCCCTGGAGAAAGTCAGCGCGCTTCACTGAACCCTCTCAGCACACAACCTGAGCCAGCAAAGGGGACATTTCTGAATGGC
TCAAAAGGGGACATTTCTGTTTTGGGTTGACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1281 bp | 426 aa | 92 | 1372 | + | No |
Chemistry : DDE
ORF sequence :
MSRKEVDRLNVIQSVLSKQLTQAQAAKQLSLCIRQIKRLVKRYREQGAAGLVSGHRGKRPNNAIEASVREKALSLIREHYSDFGPTLASEKLAQRHSLVL
SAETLRQWMIAEELWVTKRRKAARIHQRRPRRPCRGELVQIDGSPHDWFEGRAPRCTLIVFIDDATGELLALRFVPSETTQSYMETLQTYLTTHGRPVAL
YSDKHTVFRINNPEREGELTQFSRALKTLDIEAIHANTPQAKGRVERANKTLQDRLVKELRLQGISDIEAANDFLPGFMTLYNDRFAVPPQNPLDAHREV
LHSPEELDLILSLHHQRKLSKNLTLQFKNREYQLLAKGQGYAMRGATLTVCEAFDGTLTLFYKGHVMAYRLLSEGEPPTPLDDEKSVQHRVDQAKQTQKA
RPAYKPAPDHPWRKSARFTEPSQHTT
SAETLRQWMIAEELWVTKRRKAARIHQRRPRRPCRGELVQIDGSPHDWFEGRAPRCTLIVFIDDATGELLALRFVPSETTQSYMETLQTYLTTHGRPVAL
YSDKHTVFRINNPEREGELTQFSRALKTLDIEAIHANTPQAKGRVERANKTLQDRLVKELRLQGISDIEAANDFLPGFMTLYNDRFAVPPQNPLDAHREV
LHSPEELDLILSLHHQRKLSKNLTLQFKNREYQLLAKGQGYAMRGATLTVCEAFDGTLTLFYKGHVMAYRLLSEGEPPTPLDDEKSVQHRVDQAKQTQKA
RPAYKPAPDHPWRKSARFTEPSQHTT
Blast result :
Comments
ISMahy1 is 75% aa similar to ISEsa1.
References
1] Patricia Siguier (2020) Direct submission.
2] Azam,A.H., Yuk,S.R., Kamarisima,K., Miyanaga,K. and Tanji,Y. (2019) Direct GenBank submission.
2] Azam,A.H., Yuk,S.R., Kamarisima,K., Miyanaga,K. and Tanji,Y. (2019) Direct GenBank submission.