ISMaau1

  • Family IS1202
  • Group ISTde1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP002360 ND Mahella australiensis
Mahella australiensis 50-1 BON
DNA section
IS Length : 1753 bp

Ends


IR Length : 23/31

IRL : TGTTATTATTCTATGATATTGTCATAGTAAAATTATTCTGCGATAATGTC
IRR : TGTCAATAGTCAGCGAAAATGTCATAGTAAATGGCTGATATTTATTCAAC

Insertion site


Left flankDirect repeatRight flankDR Length
CATATCAAAATCAATAAGACGTTTTGCACTTTGCACGGTTTTTTAAACA16

DNA sequence

TGTTATTATTCTATGATATTGTCATAGTAAAATTATTCTGCGATAATGTCATTATGAGGAGAGAGGAACAGTATTGTATGACAGAGAGCGAAATGCAAAA
ACTTGTTGTTATTAATAAAGTCATCGATGGGACGTTAACCGCAAGTGAAGCTGCGCAGGTTTTAGACCTCAGTGTTCGTCAAATATTTAGACTTAAGAAG
GGGGTTAAAGAACAAGGTGCGTCTTTCGTTATTCATAAGAACAGAGGCCGTAAACCTGCTAATGCTTTAAGCGATGAGCTAGTAAACCATATCCTCACTT
TGAGGAAGGAAAAGTATTTTGATACGAATTTCTCTCATTTTAGAGATTTGCTTGAGGATGATAAGGGTATTATTCTTAGTAATTCCTCGGTTTATAGAAT
CCTTGATAATGCCGGTATTCAAAGCCCTAGAAAGCATAGACGCCCTCGTAAGATTCATGCTAGAAGGGAACGTATGCCTCAGGCTGGCATGTTGGTGCAA
ATCGATTGCACCTCTTTTGAATGGATTCCTTCTGTAGGTAATATGGCTCTCCACGGTGCCATAGACGATGCCACCGGTCAGGTCCTCGCGCTCTATTTTA
CTGAAAACGAGTGCATGAATGGCTATTTTGAGCTCATGCGTACCATCATTGGCCAATATGGTATCCCTATATCTCTATATGCCGATAAGCATACTATATT
TGCTTCTCCTAATAAGGGTAAAATCTCTATCGAGGAGCAGCTTGAGGGTAAAGTGGTAAATGAAACCCAGTTCCAAATGGCTATGAGTACATTGGGTATA
TCTATCATTAATGCCAGGTCCCCTCAGGCTAAGGGCCGCGTAGAGAGGCTATGGAATACTTTGCAGGATAGGCTCAGGGCAGAATTGAGGATTTATGGCA
TTGATTCTATGGAAAAGGCCAATGAGTTTTTGCCTAAGTTCCTGGAGAGATATAATAAAAGGTTCGCCATAGAGCCTCAAGATCCCGAGCCTGCTTTTAG
AGAATTACCGCCGGATATCGACTTAGATAATATACTTTGTGTTAAGTTATCTAGAAAAGTTGATAATGGCGGCGTATTTTCTCTACACAGCCAATATTAT
CAAGTTGTATGTGATGATGGCAAAACCGTTGCACCTATCGTTCCTAGAGCTAAGATAACGGTTCTTACCAGCCCTAGGATAGGTATACGGGTGCAGTATG
GCAATAATATATATGCTGTGAAAAAGCTCGATGAACCGCCTAAGAAAGCTCAGAAAGCTAATAAGGCAAGTTCATCGAGCACAGCTAAGCCTTATAAGCC
TTCTCCCACTCATCCTTGGAAACAAGGTTGGCAGAAGGCGCCATCATATTGGTATGAGGAATCAGACAGAGAGATTTTAGAGGCTCTGTATAATTCCTCA
CGCGCCTGGCACTAGCCAGTATTAAGGCTTACAGCCTAATTATATAATAGCTGCGAAATGAACGTGCGTCAAGGGCAAGCGGAGCTTGTTTATTTTACCC
TTTACGCACGGGAATGGAGCAGCTAGAATTTAGCAAAGCAGTAAGCCTTAAGATAGTATTATCTTTTTTGCTCATCTGGTGGTAATATATGTTCTCATAT
CATATTAATGTAAGTTGCTAAAGTTATATAACCAGCTTACTGTAATATAATCTATATTTAATGTTCCAATTATAGTAAATCCATACATCGCTATGAAATT
TTCGTTGAATAAATATCAGCCATTTACTATGACATTTTCGCTGACTATTGACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1338 bp445 aa781415+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTESEMQKLVVINKVIDGTLTASEAAQVLDLSVRQIFRLKKGVKEQGASFVIHKNRGRKPANALSDELVNHILTLRKEKYFDTNFSHFRDLLEDDKGIIL
SNSSVYRILDNAGIQSPRKHRRPRKIHARRERMPQAGMLVQIDCTSFEWIPSVGNMALHGAIDDATGQVLALYFTENECMNGYFELMRTIIGQYGIPISL
YADKHTIFASPNKGKISIEEQLEGKVVNETQFQMAMSTLGISIINARSPQAKGRVERLWNTLQDRLRAELRIYGIDSMEKANEFLPKFLERYNKRFAIEP
QDPEPAFRELPPDIDLDNILCVKLSRKVDNGGVFSLHSQYYQVVCDDGKTVAPIVPRAKITVLTSPRIGIRVQYGNNIYAVKKLDEPPKKAQKANKASSS
STAKPYKPSPTHPWKQGWQKAPSYWYEESDREILEALYNSSRAWH

 

Blast result :
Comments
ISMaau1 is 68% aa similar to ISSsac1.
References
1] Patricia Siguier (2020) Direct submission.
2] Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Pagani,I., Ivanova,N., Teshima,H., Brettin,T., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Pukall,R., Steenblock,K., Schneider,S., Klenk,H.-P. and Eisen,J.A. (2010) Direct GenBank submission.
3] Sikorski,J., Teshima,H., Nolan,M., Lucas,S., Hammon,N., Deshpande,S., Cheng,J.F., Pitluck,S., Liolios,K., Pagani,I., Ivanova,N., Huntemann,M., Mavromatis,K., Ovchinikova,G., Pati,A., Tapia,R., Han,C., Goodwin,L., Chen,A., Palaniappan,K., Land,M., Hauser,L., Ngatchou-Djao,O.D., Rohde,M., Pukall,R., Spring,S., Abt,B., Goker,M., Detter,J.C., Woyke,T., Bristow,J., Markowitz,V., Hugenholtz,P., Eisen,J.A., Kyrpides,N.C., Klenk,H.P. and Lapidus,A. (2011) Stand Genomic Sci 4 (3), 331-341.