ISMha7

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Mannheimia haemolytica
Mannheimia haemolytica 32635
Pasteurella multocida PM22
DNA section
IS Length : 2044 bp

Ends


IR Length : 25/33

IRL : GGGTATCCGGATTTAGCGGTTGATCTGCGCTAGACGTAATTTTGTAAATA
IRR : GGGTATCCGGATTACAGGGTTGAAACAGGGCTATAAACGCCCCGCCTCAA

Insertion site


Left flankDirect repeatRight flankDR Length
GATGAACAGACTATTCGTAATTACTACTCCTTTGCCACCTTAACCGATTC0
GTATTTATATATGATATTTTAAATAAAGTCCTATCAACGTTAT0
AAATCAATTTTTGATTTTAATAATTCTACGGT8

DNA sequence

GGGTATCCGGATTTAGCGGTTGATCTGCGCTAGACGTAATTTTGTAAATAAACCGGATTTTAGGGTTGACGGAAAAGGCCAGATGCCCTAATATTAGATT
CAAGAGCTGAGAACAACGGCTCGGGCATAAGCCCAACGGGCGCACCGCCGAACTTGGTGCAGGATAGAAGCCATGTCATACGATGCAAATGATGCGCTGA
ATGAAATCGAAGAGGCGCTTAGCGAGCTTGAAAGGGTTGCTGAAGACCTAATCAACAACAACCCGAATAAAGAATCAGAATTACGCGGCCAAGGGGTTCA
CCAAGCGACAAAGCACCTCCGTTTTCGTATTCGCAACATCCGCCGCGGCGAAGCAATTTGACTAACATGCCGCCCTAGGGGCGGCTTTCAGCGAGGTCAG
CATGAAAATCAAACTCTATTTTCCGGACGAGTCTATCGCCACGATAAAGCGAATGGGGCTTCGCCAAATGTCTCCCGAGACTCTCAGGTGGACTGCCGAT
CATCCGTCAAGCAGCTATGGTATGGGCGCTTTGCTCAGAGGCAAGTCTGGTGAAATCCTTGATGGGAAGTCTTTTGCTGCAATGGTGCATGCCTTTGGCG
CGTGGATTGAAACAGACAGTGAAGATACCAGTCGTCGAGTTCATAACGCGCTAGTCACTGCTGCCACTGGCACCGAGGAATCGGTTAAGGTGGCAAAGGA
GTAATGTCGAATATCCTCAACTGGCCTGATTACAAAGTGCTCCAGGTATCCGAACTGGAGCACGATTACCAGGTACACGCCGAAGTTTCCGAACCGCCTA
CGCAGTGCCCCCACTGCAATCATCCTGAAATCGTCGGCTTTGGTCGCCGTGATGAGGTGATCATGGATACACCCGTCCACGGAAGGCGTACCGGCATCAT
GCTTAACCGCCGTCGCTATCGCTGCCAGTCTTGCCGAAAGACGTTTCTGGAGCCTGTACCGCACAAAGACGAAAAGCGGCAGATGACCAACCGCCTGATC
CAGTACATCGAGCGCGAGAGCCTGCGCCGCACGTTCTCCAGTGTTGCCGAGGATGTGGGCGTCGATGAAAAGACCGTCCGTAACATTTTCAACGACTATT
GTGAACGCCTCGAAAAGACGCTCAATTTTGAAATGCCGCAGTGGTTGGGTATCGACGAAATCCACATCATCAAACCCCGCTGCGTGATCACCAACATTCA
GCAGCAGACCATTGTGGACATGCTGGATAACCGCAATAAAACCACCGTCACCCGCTACCTGAGCAAACGCACTGACCGCGACCTGGTGCGCTACGTGGCA
ATGGATATGTGGAGGCCGTACCGGCAAGCAGTAGAAACCATGATTCCTGACGCCACGGTGATCATCGACAAGTTCCACGTTGTCAGGATGGCGAACGAAT
CACTGGAACGCGCCAGAAAAGCCATCAGAAGCGCCCTGACGCCACAGCAGCGCCGTGGGTTGATGCGAGATAGGTTTGTCCTACTGAAACGCCGTCACGA
GCTGACAGATGCCGAATACATGCGTTTTTCAGGCTGGACATTGAATTACCCTGAGATTGGCCAAGCCTACGAACTGAAAGAAGCCTTTTTCGAGATTTGG
GACTGTCAGACCCGGCACCAGGCACAGGAGGCATATTACTCTTGGCTGCGACAGATTACGCCGGAAATGAAAGCCCACTATGACCCGCTTATCAAAGCGA
TGGGCAACTGGCACGATGACATTTTCGCTTACTTCGACCACCCCATTACCAACGCCTACACCGAGTCACTGAACAACCTGATTCGTGTTGTTAATCGTGT
TGGCCGTGGCTACAGCTTTGAAGCGCTGCGAGCCAAGATCCTGTTTACTGAGGGCTTCCAGAAGATCAAGAAGCCACGCTATCAGCGTCAACGGATACCC
GAGGGCGCTATGGGCAGGATGCCGTTCTATGGCGTTGCCGAAGCGGGGCCATCCACTAACTACGGCGCTGACATATCAACACTGGTGCGGGAGATTGAGG
CGGGGCGTTTATAGCCCTGTTTCAACCCTGTAATCCGGATACCC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
303 bp100 aa402704+No
ORF function : Passenger Gene
Annotation : hypothetical proteinDescription :

ORF sequence :

MKIKLYFPDESIATIKRMGLRQMSPETLRWTADHPSSSYGMGALLRGKSGEILDGKSFAAMVHAFGAWIETDSEDTSRRVHNALVTAATGTEESVKVAKE

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1311 bp436 aa7042014+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MSNILNWPDYKVLQVSELEHDYQVHAEVSEPPTQCPHCNHPEIVGFGRRDEVIMDTPVHGRRTGIMLNRRRYRCQSCRKTFLEPVPHKDEKRQMTNRLIQ
YIERESLRRTFSSVAEDVGVDEKTVRNIFNDYCERLEKTLNFEMPQWLGIDEIHIIKPRCVITNIQQQTIVDMLDNRNKTTVTRYLSKRTDRDLVRYVAM
DMWRPYRQAVETMIPDATVIIDKFHVVRMANESLERARKAIRSALTPQQRRGLMRDRFVLLKRRHELTDAEYMRFSGWTLNYPEIGQAYELKEAFFEIWD
CQTRHQAQEAYYSWLRQITPEMKAHYDPLIKAMGNWHDDIFAYFDHPITNAYTESLNNLIRVVNRVGRGYSFEALRAKILFTEGFQKIKKPRYQRQRIPE
GAMGRMPFYGVAEAGPSTNYGADISTLVREIEAGRL

 

Blast result :
Comments
ISMha7 is 61% aa (transposase) similar to ISPst9.
References
1] Anne-Kathrin Schink (2021) Direct submission.