ISMha6

  • Family IS1595
  • Group IS1016
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Mannheimia haemolytica
Mannheimia haemolytica
DNA section
IS Length : 730 bp

Ends


IR Length : 17

IRL : GGCTCTAGACTAGCAGAACTACTCTGTTAGACTAGAAAAATGAGATACAA
IRR : GGCTCTAGACTAGCAGAGGGATTGGATTAATTTATTGCAGAAGCGACCAT

Insertion site


Left flankDirect repeatRight flankDR Length
CATGGTATTTTTCATGGTATTACCAATTTTATTTTAGCAAGT0

DNA sequence

GGCTCTAGACTAGCAGAACTACTCTGTTAGACTAGAAAAATGAGATACAACAGTAAATTAAGCACATATCAACTCAAAAAAATTATTCGGCACTTTTGTG
CCGATATTGAAGCCTCAAAAACCGCTCTACTGACTGGTTTTAATCGCAACACTATCAATCATTGGTATAACATCTTTCGTCAGGAAATCTATCGTCATCA
GAGTGAAATTAAGGAACAACTCTATGGAAGCATAGAAGTCGATGAAAGCTATTTTGGCGCTAAGCGGCAACGTGGTTTTCATGGCAAACTTAAACGCGGC
AGAGGAACCTTGAAACAGCCTGTATTCGGTATATTTGAACGTGAGGGCAGGGTTTATACGGAAATCGTTCCTGATTGTAAGAAGAAGACCTTGCAAGATA
TTATACTGGGTAAAGTCAGCTTGGACAGTGTTATCTATTCTGATAGTTGGCGTGGATATAGTGGATTGGTTGATGTGGGTTATAGCAAGCATTTGCGGGT
TAATCATGGACAAAATGAATTTGCTCATGGCAGCAGACATATCAACGGTATAGAAAGTTTTTGGAGTTTTACCAAAAGAAGGCTTGCAAAATTTAACGGT
GTAAGCTAAAATTTCGAATGGCATTTGAAAGAATGCGAATGGCGTTGGAAGCAGAGCATTGATGATTTAGAAAAACATTTATGGTCGCTTCTGCAATAAA
TTAATCCAATCCCTCTGCTAGTCTAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
570 bp189 aa40609+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRYNSKLSTYQLKKIIRHFCADIEASKTALLTGFNRNTINHWYNIFRQEIYRHQSEIKEQLYGSIEVDESYFGAKRQRGFHGKLKRGRGTLKQPVFGIFE
REGRVYTEIVPDCKKKTLQDIILGKVSLDSVIYSDSWRGYSGLVDVGYSKHLRVNHGQNEFAHGSRHINGIESFWSFTKRRLAKFNGVS

 

Blast result :
Comments
ISMha6 is 85% aa similar to ISAcra1.
References
1] Anne-Kathrin Schink (2021) Direct submission.