ISMha6
- Family IS1595
- Group IS1016
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Mannheimia haemolytica | Mannheimia haemolytica |
DNA section
IS Length : 730 bp
Ends
IR Length : 17
IRL : GGCTCTAGACTAGCAGAACTACTCTGTTAGACTAGAAAAATGAGATACAA
IRR : GGCTCTAGACTAGCAGAGGGATTGGATTAATTTATTGCAGAAGCGACCAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CATGGTATTTTTCATGGTATTACCAA | TTTTATTTTAGCAAGT | 0 |
DNA sequence
GGCTCTAGACTAGCAGAACTACTCTGTTAGACTAGAAAAATGAGATACAACAGTAAATTAAGCACATATCAACTCAAAAAAATTATTCGGCACTTTTGTG
CCGATATTGAAGCCTCAAAAACCGCTCTACTGACTGGTTTTAATCGCAACACTATCAATCATTGGTATAACATCTTTCGTCAGGAAATCTATCGTCATCA
GAGTGAAATTAAGGAACAACTCTATGGAAGCATAGAAGTCGATGAAAGCTATTTTGGCGCTAAGCGGCAACGTGGTTTTCATGGCAAACTTAAACGCGGC
AGAGGAACCTTGAAACAGCCTGTATTCGGTATATTTGAACGTGAGGGCAGGGTTTATACGGAAATCGTTCCTGATTGTAAGAAGAAGACCTTGCAAGATA
TTATACTGGGTAAAGTCAGCTTGGACAGTGTTATCTATTCTGATAGTTGGCGTGGATATAGTGGATTGGTTGATGTGGGTTATAGCAAGCATTTGCGGGT
TAATCATGGACAAAATGAATTTGCTCATGGCAGCAGACATATCAACGGTATAGAAAGTTTTTGGAGTTTTACCAAAAGAAGGCTTGCAAAATTTAACGGT
GTAAGCTAAAATTTCGAATGGCATTTGAAAGAATGCGAATGGCGTTGGAAGCAGAGCATTGATGATTTAGAAAAACATTTATGGTCGCTTCTGCAATAAA
TTAATCCAATCCCTCTGCTAGTCTAGAGCC
CCGATATTGAAGCCTCAAAAACCGCTCTACTGACTGGTTTTAATCGCAACACTATCAATCATTGGTATAACATCTTTCGTCAGGAAATCTATCGTCATCA
GAGTGAAATTAAGGAACAACTCTATGGAAGCATAGAAGTCGATGAAAGCTATTTTGGCGCTAAGCGGCAACGTGGTTTTCATGGCAAACTTAAACGCGGC
AGAGGAACCTTGAAACAGCCTGTATTCGGTATATTTGAACGTGAGGGCAGGGTTTATACGGAAATCGTTCCTGATTGTAAGAAGAAGACCTTGCAAGATA
TTATACTGGGTAAAGTCAGCTTGGACAGTGTTATCTATTCTGATAGTTGGCGTGGATATAGTGGATTGGTTGATGTGGGTTATAGCAAGCATTTGCGGGT
TAATCATGGACAAAATGAATTTGCTCATGGCAGCAGACATATCAACGGTATAGAAAGTTTTTGGAGTTTTACCAAAAGAAGGCTTGCAAAATTTAACGGT
GTAAGCTAAAATTTCGAATGGCATTTGAAAGAATGCGAATGGCGTTGGAAGCAGAGCATTGATGATTTAGAAAAACATTTATGGTCGCTTCTGCAATAAA
TTAATCCAATCCCTCTGCTAGTCTAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
570 bp | 189 aa | 40 | 609 | + | No |
Chemistry : DDE
ORF sequence :
MRYNSKLSTYQLKKIIRHFCADIEASKTALLTGFNRNTINHWYNIFRQEIYRHQSEIKEQLYGSIEVDESYFGAKRQRGFHGKLKRGRGTLKQPVFGIFE
REGRVYTEIVPDCKKKTLQDIILGKVSLDSVIYSDSWRGYSGLVDVGYSKHLRVNHGQNEFAHGSRHINGIESFWSFTKRRLAKFNGVS
REGRVYTEIVPDCKKKTLQDIILGKVSLDSVIYSDSWRGYSGLVDVGYSKHLRVNHGQNEFAHGSRHINGIESFWSFTKRRLAKFNGVS
Blast result :
Comments
ISMha6 is 85% aa similar to ISAcra1.
References
1] Anne-Kathrin Schink (2021) Direct submission.