ISMahy12
- Family IS110
- Group IS1111
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_017067.1 | ND | Marinobacter hydrocarbonoclasticus | Marinobacter hydrocarbonoclasticus ATCC 49840 |
DNA section
IS Length : 1582 bp
Ends
IR Length : 11
IRL : TACTGATTGAGCCTTCTCCCCAGCCCAGCGGTTGCCCGCTAAGCTGGAAG
IRR : ATATGAGCCTTCTCTGAATCAATAGGCAATAGTGGTTTTTTGGCCGCGGC
Comments : According to the rules of this group, the IRs are not at the termini of the IS.
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TTGACCACCTTGA | GGGTTATATGCACAA | 0 |
DNA sequence
TACTGATTGAGCCTTCTCCCCAGCCCAGCGGTTGCCCGCTAAGCTGGAAGGCGACGAAGCACTACAAGGGAGAAGACTCATGAACTTTTACCATAGCACC
CACCGCCATTATTGTGGAATCGATCTGCATGCCCGCAGCCTGTATGTCTGCATCATCGACCAACAGGGCGAGGTACTTCTGCACAAAGAAATCAAAGCTC
GCCCGGAACCGCTTCTGGCCCTGCTTGAACCGTTTCGTGATGACCTGGTGATCGGTGTCGAATGCATGCACTGCTGGTACTGGATCTCGGATCTGTGTGA
AGAACACAGCATTCACTTTATCCTGGGCCATGCCTTGTATATGAAAGCCATTCATGGCGGTAAAACCAAGAACGACCGCATCGATTCCTTCAAGATCGCC
ATGCTCATGAAGGGCGGCAATTTCCCCCTGGCCTACGTTTATCCCAAGGAGATGCGGGCCACACGCGACTTGTTACGCCGACGCACCCGCATCGTCCAAC
ACGGGGCCATGCTCAAAGCCCATGTGGTGAATACCACGAGCCAATACAACCTGCCGCCCAACAAGGCCAACCTGAAGAATATCGGCGCCCGGGAACAGGT
TCGGGCGACGTTTGCCAACCGGGATGTCCAACACAACATCGATCTCGACCTGGCGATCATCGAGTGCTATCACCGGGAACTCAGCAAACTGGAAGATCAC
CTGGAACAGCAGGCCAAACAACACGATCCCACTTCCCTGAGTGTGCTGAAGACTATTCCCGGTGTGGGGCGCATCTTGGCGCTGACCATTCTCTACGAAA
TCGGCGACATCCAGCGCTTTGAATCAGTCCAGAAGTTCGCTTCTTACGCCCGACTCATCAAATGCAAAGCCGAGTCTGCCGGCAAGGTTTACGGAACCCA
GGGCAACAAGATCGGCAATGCCCACCTGAAGTGGGCCTTCTCGGAAGCAGCGGTGTTGTACCTGCGGGGCAATGACAAGGCCCAGCGCTATCTACAGAAA
CTCCAGAAACGCATGAACAAACCCAAGGCGCTGTCCGCGCTGGCCCACAAGCTGGGCCGAGCTGCCTACTTCATGCTCAAGCATCAGAGGGTGTTCGATG
AACAACAATTCCTGAAGGGTTAGTCACGCCACGGGGTGAGCATGACGTCTAACTGGATCAAACAGGATGATGACCGAAAGCCGGGTGTCCGCTGACTGGT
ACTCGATACCAAACCAGCCTTCTATCACCGCCGTTGAAGCCAGTCGCTTTGATTAGCCACCCCGTGGGCGTGCCTTAATACCATGAGCCAGTGCGCTTAC
ACCGATCCTGAGCCTGACCCTAACTGGAGCTATGCAGCCAGATCCTTGAATAGTGCCAGTGATCGGTTAACCGATGAATGTCTGGTGCCCCTAACCCACC
GATGGAACGACCGGTTAGGCTGTGGTCTAAAGCCACGTAAGAGAGCCCCTATATGTGTTTGCTGTGAGTGCCTGACAGCCCTACGAGACTGACGAAGCAG
GCGTTCTCGCTCATGGGTTTAGGTTGGCCGCTGCCGCGGCCAAAAAACCACTATTGCCTATTGATTCAGAGAAGGCTCATAT
CACCGCCATTATTGTGGAATCGATCTGCATGCCCGCAGCCTGTATGTCTGCATCATCGACCAACAGGGCGAGGTACTTCTGCACAAAGAAATCAAAGCTC
GCCCGGAACCGCTTCTGGCCCTGCTTGAACCGTTTCGTGATGACCTGGTGATCGGTGTCGAATGCATGCACTGCTGGTACTGGATCTCGGATCTGTGTGA
AGAACACAGCATTCACTTTATCCTGGGCCATGCCTTGTATATGAAAGCCATTCATGGCGGTAAAACCAAGAACGACCGCATCGATTCCTTCAAGATCGCC
ATGCTCATGAAGGGCGGCAATTTCCCCCTGGCCTACGTTTATCCCAAGGAGATGCGGGCCACACGCGACTTGTTACGCCGACGCACCCGCATCGTCCAAC
ACGGGGCCATGCTCAAAGCCCATGTGGTGAATACCACGAGCCAATACAACCTGCCGCCCAACAAGGCCAACCTGAAGAATATCGGCGCCCGGGAACAGGT
TCGGGCGACGTTTGCCAACCGGGATGTCCAACACAACATCGATCTCGACCTGGCGATCATCGAGTGCTATCACCGGGAACTCAGCAAACTGGAAGATCAC
CTGGAACAGCAGGCCAAACAACACGATCCCACTTCCCTGAGTGTGCTGAAGACTATTCCCGGTGTGGGGCGCATCTTGGCGCTGACCATTCTCTACGAAA
TCGGCGACATCCAGCGCTTTGAATCAGTCCAGAAGTTCGCTTCTTACGCCCGACTCATCAAATGCAAAGCCGAGTCTGCCGGCAAGGTTTACGGAACCCA
GGGCAACAAGATCGGCAATGCCCACCTGAAGTGGGCCTTCTCGGAAGCAGCGGTGTTGTACCTGCGGGGCAATGACAAGGCCCAGCGCTATCTACAGAAA
CTCCAGAAACGCATGAACAAACCCAAGGCGCTGTCCGCGCTGGCCCACAAGCTGGGCCGAGCTGCCTACTTCATGCTCAAGCATCAGAGGGTGTTCGATG
AACAACAATTCCTGAAGGGTTAGTCACGCCACGGGGTGAGCATGACGTCTAACTGGATCAAACAGGATGATGACCGAAAGCCGGGTGTCCGCTGACTGGT
ACTCGATACCAAACCAGCCTTCTATCACCGCCGTTGAAGCCAGTCGCTTTGATTAGCCACCCCGTGGGCGTGCCTTAATACCATGAGCCAGTGCGCTTAC
ACCGATCCTGAGCCTGACCCTAACTGGAGCTATGCAGCCAGATCCTTGAATAGTGCCAGTGATCGGTTAACCGATGAATGTCTGGTGCCCCTAACCCACC
GATGGAACGACCGGTTAGGCTGTGGTCTAAAGCCACGTAAGAGAGCCCCTATATGTGTTTGCTGTGAGTGCCTGACAGCCCTACGAGACTGACGAAGCAG
GCGTTCTCGCTCATGGGTTTAGGTTGGCCGCTGCCGCGGCCAAAAAACCACTATTGCCTATTGATTCAGAGAAGGCTCATAT
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1044 bp | 347 aa | 80 | 1123 | + | No |
Chemistry : DEDD
ORF sequence :
MNFYHSTHRHYCGIDLHARSLYVCIIDQQGEVLLHKEIKARPEPLLALLEPFRDDLVIGVECMHCWYWISDLCEEHSIHFILGHALYMKAIHGGKTKNDR
IDSFKIAMLMKGGNFPLAYVYPKEMRATRDLLRRRTRIVQHGAMLKAHVVNTTSQYNLPPNKANLKNIGAREQVRATFANRDVQHNIDLDLAIIECYHRE
LSKLEDHLEQQAKQHDPTSLSVLKTIPGVGRILALTILYEIGDIQRFESVQKFASYARLIKCKAESAGKVYGTQGNKIGNAHLKWAFSEAAVLYLRGNDK
AQRYLQKLQKRMNKPKALSALAHKLGRAAYFMLKHQRVFDEQQFLKG
IDSFKIAMLMKGGNFPLAYVYPKEMRATRDLLRRRTRIVQHGAMLKAHVVNTTSQYNLPPNKANLKNIGAREQVRATFANRDVQHNIDLDLAIIECYHRE
LSKLEDHLEQQAKQHDPTSLSVLKTIPGVGRILALTILYEIGDIQRFESVQKFASYARLIKCKAESAGKVYGTQGNKIGNAHLKWAFSEAAVLYLRGNDK
AQRYLQKLQKRMNKPKALSALAHKLGRAAYFMLKHQRVFDEQQFLKG
Blast result :
Comments
ISMahy12 is 86% aa similar to ISShfr7.
References
1] Sarah Sonbol (2020) Direct submission.
2] Grimaud,R., Ghiglione,J.F., Cagnon,C., Lauga,B., Vaysse,P.J., Rodriguez-Blanco,A., Mangenot,S., Cruveiller,S., Barbe,V., Duran,R., Wu,L.F., Talla,E., Bonin,P. and Michotey,V. (2012)J. Bacteriol. 194 (13), 3539-3540.
2] Grimaud,R., Ghiglione,J.F., Cagnon,C., Lauga,B., Vaysse,P.J., Rodriguez-Blanco,A., Mangenot,S., Cruveiller,S., Barbe,V., Duran,R., Wu,L.F., Talla,E., Bonin,P. and Michotey,V. (2012)J. Bacteriol. 194 (13), 3539-3540.