ISMahy3
- Family IS1182
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_008740.1 | ND | Marinobacter hydrocarbonoclasticus | Marinobacter hydrocarbonoclasticus VT8 |
DNA section
IS Length : 1585 bp
Ends
IR Length : 13
IRL : GAGTCTGCGCGGCAGAAGCTCGTTTCTGGCATAATAAACCGAAAATTTTT
IRR : GAGTCTGCGCGGCAGAAGTGTCTTGAGCAAGTGCCTCCGCCGCGCCGAAT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| ATCGACAGGCC | CTAG | CCCGAATTTCTC | 4 |
DNA sequence
GAGTCTGCGCGGCAGAAGCTCGTTTCTGGCATAATAAACCGAAAATTTTTCGGCAACAGGACGTCTGATGGGAACCACTTTCCGCCCGTACTCGCCCGAC
CAGGAATTGCTCCTTCCCCCAAGCCTGAATGAGTGGCTGCCTGATGGCCACCTGGCCTATTTTGTCAGTGATGTTGTCGAGGAGCTGGATTTAAATGCGT
TTTACGCCCGCTACGAAGGCAACGGTCGGCGTAACTCGCCGTTCGATCCGCGGATGATGCTGAAGGTTCTTATTTACGCCTACGCCACCGGCGTATTCTC
CTCACGCAAGATTGCCCGGAAGTTGGAGGAAGACGTCGCCTTTCGGGTTCTGGCTGCGGGTAATTTTCCCAAGCACCGCACGATCTGTGATTTCCGCAAA
CACCATCTGGTCGCCTTCAAGGCCATCTTCATTCAAGTCGTACGGATTGCCCGGGAGGCGGAGCTGATCACGCTGGGAACACTGGCGATTGATGGCACAA
AGATTCGGGCTAATGCCAGTAAGCACAAGGCCATGAGCTATGGCCGCATGGGCGAGGAAGAAGATCGTTTATCGAAAGAGATCGATGGGCTATGTCGTCA
GGCCCGTCGAACGGACGAGTCGGAAGATCGGCAGTTCGGCCCGGATCAGCGGGGTGATGAGCTACCTGAGGAGTTGCAGTACCGACAGGCGCGACTGGAC
AAGATCCGCGCTGCCAAGGAGAAGTTGGAAGCGGATCAGAAAGCGCGGGATACAGCCAAAGGCCGGCACCCGGACGATGATCGCCGCCCACCCCGCGGTG
GCCGGAACTTCAAGCGAGATTACGGGGTGCCGGACGACAAAGATCAAAGCAACTTTACCGACCCGCAAAGCCGGATTATGAAAACGGCGGATGGGTTCCA
GCAATGCTACAACGGCCAGTTGGCCGTGGATGGTGAATTCCAACTGATTGTCGCTAATCATCTGGGCAGCAATGCCAGTGATCAGGGGCGCCTGATACCG
CTACTGGATGACGTGAAAGACATCCTGAAAACCTATCCGCAACAATGCCTGGCCGATGCCGGTTACCGTAAAGAAGACGACTTACAGTCCCTGGAGGACA
AAAGGATCGACGGTTATGTTTCGCTGCGTCGGGAAGGGAAAAAGAGCGCAGAGATAGACGCGAGCGGTTATCCCGCCACGTCACGGATGGCCGAGAAGCT
GGCCACCGCGACGGGGCGATCGGTTTACGCCCGGCGCAAGCATCTGGTTGAGGCGGTTAATGGCTGGATCAAGCATATTCTGGGCTTCCGGCAGTTCAGC
CTGAGGGGGCTTAATGCCGTGCAAGGCGAATGGGATCTGGTCTGCCTGTCGCTTAACCTCAGGCGGATGAGTTCGCTGATGAGGCTGACATAGGCGATCT
GAGGCGGCTTGCCGGGCCGTGCTGAGTGGTCGGGCTACGGTTGTGAACTTGCCTATAACCGTCTTGATTGCCTGAATAGAAAATCGTGACTCTATCCGGT
TGGATACTGCGCCTATACTCTCGGGCACAACCGTGATTCGGCGCGGCGGAGGCACTTGCTCAAGACACTTCTGCCGCGCAGACTC
CAGGAATTGCTCCTTCCCCCAAGCCTGAATGAGTGGCTGCCTGATGGCCACCTGGCCTATTTTGTCAGTGATGTTGTCGAGGAGCTGGATTTAAATGCGT
TTTACGCCCGCTACGAAGGCAACGGTCGGCGTAACTCGCCGTTCGATCCGCGGATGATGCTGAAGGTTCTTATTTACGCCTACGCCACCGGCGTATTCTC
CTCACGCAAGATTGCCCGGAAGTTGGAGGAAGACGTCGCCTTTCGGGTTCTGGCTGCGGGTAATTTTCCCAAGCACCGCACGATCTGTGATTTCCGCAAA
CACCATCTGGTCGCCTTCAAGGCCATCTTCATTCAAGTCGTACGGATTGCCCGGGAGGCGGAGCTGATCACGCTGGGAACACTGGCGATTGATGGCACAA
AGATTCGGGCTAATGCCAGTAAGCACAAGGCCATGAGCTATGGCCGCATGGGCGAGGAAGAAGATCGTTTATCGAAAGAGATCGATGGGCTATGTCGTCA
GGCCCGTCGAACGGACGAGTCGGAAGATCGGCAGTTCGGCCCGGATCAGCGGGGTGATGAGCTACCTGAGGAGTTGCAGTACCGACAGGCGCGACTGGAC
AAGATCCGCGCTGCCAAGGAGAAGTTGGAAGCGGATCAGAAAGCGCGGGATACAGCCAAAGGCCGGCACCCGGACGATGATCGCCGCCCACCCCGCGGTG
GCCGGAACTTCAAGCGAGATTACGGGGTGCCGGACGACAAAGATCAAAGCAACTTTACCGACCCGCAAAGCCGGATTATGAAAACGGCGGATGGGTTCCA
GCAATGCTACAACGGCCAGTTGGCCGTGGATGGTGAATTCCAACTGATTGTCGCTAATCATCTGGGCAGCAATGCCAGTGATCAGGGGCGCCTGATACCG
CTACTGGATGACGTGAAAGACATCCTGAAAACCTATCCGCAACAATGCCTGGCCGATGCCGGTTACCGTAAAGAAGACGACTTACAGTCCCTGGAGGACA
AAAGGATCGACGGTTATGTTTCGCTGCGTCGGGAAGGGAAAAAGAGCGCAGAGATAGACGCGAGCGGTTATCCCGCCACGTCACGGATGGCCGAGAAGCT
GGCCACCGCGACGGGGCGATCGGTTTACGCCCGGCGCAAGCATCTGGTTGAGGCGGTTAATGGCTGGATCAAGCATATTCTGGGCTTCCGGCAGTTCAGC
CTGAGGGGGCTTAATGCCGTGCAAGGCGAATGGGATCTGGTCTGCCTGTCGCTTAACCTCAGGCGGATGAGTTCGCTGATGAGGCTGACATAGGCGATCT
GAGGCGGCTTGCCGGGCCGTGCTGAGTGGTCGGGCTACGGTTGTGAACTTGCCTATAACCGTCTTGATTGCCTGAATAGAAAATCGTGACTCTATCCGGT
TGGATACTGCGCCTATACTCTCGGGCACAACCGTGATTCGGCGCGGCGGAGGCACTTGCTCAAGACACTTCTGCCGCGCAGACTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1326 bp | 441 aa | 68 | 1393 | + | No |
Chemistry : DDE
ORF sequence :
MGTTFRPYSPDQELLLPPSLNEWLPDGHLAYFVSDVVEELDLNAFYARYEGNGRRNSPFDPRMMLKVLIYAYATGVFSSRKIARKLEEDVAFRVLAAGNF
PKHRTICDFRKHHLVAFKAIFIQVVRIAREAELITLGTLAIDGTKIRANASKHKAMSYGRMGEEEDRLSKEIDGLCRQARRTDESEDRQFGPDQRGDELP
EELQYRQARLDKIRAAKEKLEADQKARDTAKGRHPDDDRRPPRGGRNFKRDYGVPDDKDQSNFTDPQSRIMKTADGFQQCYNGQLAVDGEFQLIVANHLG
SNASDQGRLIPLLDDVKDILKTYPQQCLADAGYRKEDDLQSLEDKRIDGYVSLRREGKKSAEIDASGYPATSRMAEKLATATGRSVYARRKHLVEAVNGW
IKHILGFRQFSLRGLNAVQGEWDLVCLSLNLRRMSSLMRLT
PKHRTICDFRKHHLVAFKAIFIQVVRIAREAELITLGTLAIDGTKIRANASKHKAMSYGRMGEEEDRLSKEIDGLCRQARRTDESEDRQFGPDQRGDELP
EELQYRQARLDKIRAAKEKLEADQKARDTAKGRHPDDDRRPPRGGRNFKRDYGVPDDKDQSNFTDPQSRIMKTADGFQQCYNGQLAVDGEFQLIVANHLG
SNASDQGRLIPLLDDVKDILKTYPQQCLADAGYRKEDDLQSLEDKRIDGYVSLRREGKKSAEIDASGYPATSRMAEKLATATGRSVYARRKHLVEAVNGW
IKHILGFRQFSLRGLNAVQGEWDLVCLSLNLRRMSSLMRLT
Blast result :
Comments
ISMahy3 is 69% aa similar to ISThsp1.
References
1] Sarah Sonbol (2020) Direct submission.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Edwards,K. and Richardson,P. (200-) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Edwards,K. and Richardson,P. (200-) Direct submission GenBank.