ISMahy14

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008740 ND Marinobacter hydrocarbonoclasticus
Marinobacter hydrocarbonoclasticus VT8
DNA section
IS Length : 1383 bp

Ends


IR Length : 22/30

IRL : GAGCTATAACTAGATCTGGTGTTCAGGGGATTTGAAAAAAAGCGGCGTAT
IRR : GAGTTATGGTCAAGAGTGGTGTTCAGCGGCCTGATCAAGCAGCGTCCTGG

Insertion site


Left flankDirect repeatRight flankDR Length
TGTTCTGCGGCCGTCACCTGCTGGTGAGCTACCTGCGCA8

DNA sequence

GAGCTATAACTAGATCTGGTGTTCAGGGGATTTGAAAAAAAGCGGCGTATCTGGTTGATTTGTCATCGCCAAACAACAAGTCAATACGAGAGTACACCGC
CATGAACAAGAATACCGTTGTCGAGTTTGCCCGTCGAGATGAGGCGACCGACCCGTTGACAGAAATGCTGCGAAAAGGCGCACGCGAGCTGATTCAGCAG
GCCGTTGAGGCTGAGCTGGCAGCCTTCCTGGAAGGGTATCAAAACCGCCGCCTGGAGGATGGACGAGCAGCCGTCGTCCGTAATGGCCATTTGCCAGAGC
GCGAGATCCAGACAGGTATCGGTCCGGTAACGGTGCAGATTCCCAAGGTGCGCAGCAAGGACGGTGAGCCGGTGACGTTTCGGTCAGCACTGGTACCGCC
CTATGTGCGCAAGACCCGAAGCCTGGAAGCCGCTTTGCCTTGGCTGTACCTGAAAGGCGTCTCAACCGGCGAGATGGAGCAAGCGCTGTCAGCACTGGTC
GGACCTGAAGCCAAGGGACTGTCGGCCAGCACGGTATCGCGGCTCAAGCGCCAGTGGGCTGATGAGTATGATGCTTGGTGTAAGCGCCCGCTTGATCAAG
AGCGCTGGGTCTACATTTGGGCAGATGGGATCTACAGCGGACTGCGTTCAGAGGAGAGCAAGCTCTGTGCGCTGGTCATCATGGGTGTCAACGCGCGAGG
CGAGAAGCACTTTCTGGCGATCGAAGACGGTGAGCGCGAATCGACATTGAGCTGGACAGCGGTGCTGGAGGGACTCAAAGGGCGCGGTATGAACGCGCCT
GAACTGGCGGTTGGCGATGGCGCTATGGGGTTCTGGGCCGCACTGGAGTGTGTGTATCCATCAACACGCCAGCAACGCTGCTGGGTGCATAAAACGGCCA
ATGTCCTGAATCGCTTGCCAAAGGCCAGCCAGCCGAGAGCCAAGAAGGCGCTTCAGGCGATCTGGCATGCCGAGACGCGTGAGGATGCCGAGAAGGCCTT
TGATGCCTTTATCAGGACATATGACGCCAAGTACCCGAAAGTCGCCGAGTGCTTGCTGAAGGATCACGAAGAGCTGATGAGCTTCTTCGACTTTCCAGCG
AAGCATTGGCAGAGCATCCGGACGACGAACCCGATCGAATCCACGTTCGGGACGATACGGCACCGGACCAAGCGATCCAAGGGCTGCCTGTCGAGGAATG
GCATGCTGCACATGATGTTCAAACTGGGCATGTGCGCAGAAGAGAGATGGAGAAAGCTGCGGGGCTTTGAGCAACTGGCCAAAGTCATCACCGGCGTGAA
ATTCAGGGATGGAGAAGAGGTGACGGCAGTCAACCAGGACGCTGCTTGATCAGGCCGCTGAACACCACTCTTGACCATAACTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1248 bp415 aa1021349+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNKNTVVEFARRDEATDPLTEMLRKGARELIQQAVEAELAAFLEGYQNRRLEDGRAAVVRNGHLPEREIQTGIGPVTVQIPKVRSKDGEPVTFRSALVPP
YVRKTRSLEAALPWLYLKGVSTGEMEQALSALVGPEAKGLSASTVSRLKRQWADEYDAWCKRPLDQERWVYIWADGIYSGLRSEESKLCALVIMGVNARG
EKHFLAIEDGERESTLSWTAVLEGLKGRGMNAPELAVGDGAMGFWAALECVYPSTRQQRCWVHKTANVLNRLPKASQPRAKKALQAIWHAETREDAEKAF
DAFIRTYDAKYPKVAECLLKDHEELMSFFDFPAKHWQSIRTTNPIESTFGTIRHRTKRSKGCLSRNGMLHMMFKLGMCAEERWRKLRGFEQLAKVITGVK
FRDGEEVTAVNQDAA

 

Blast result :
Comments
ISMahy14 is 81% aa similar to ISOan7.
References
1] Sarah Sonbol(2021) Direct submission.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Edwards,K. and Richardson,P. (2006) Direct GenBank submission.