ISMahy14
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008740 | ND | Marinobacter hydrocarbonoclasticus | Marinobacter hydrocarbonoclasticus VT8 |
DNA section
IS Length : 1383 bp
Ends
IR Length : 22/30
IRL : GAGCTATAACTAGATCTGGTGTTCAGGGGATTTGAAAAAAAGCGGCGTAT
IRR : GAGTTATGGTCAAGAGTGGTGTTCAGCGGCCTGATCAAGCAGCGTCCTGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGTTCTGCGGCCGTCA | CCTGCTGG | TGAGCTACCTGCGCA | 8 |
DNA sequence
GAGCTATAACTAGATCTGGTGTTCAGGGGATTTGAAAAAAAGCGGCGTATCTGGTTGATTTGTCATCGCCAAACAACAAGTCAATACGAGAGTACACCGC
CATGAACAAGAATACCGTTGTCGAGTTTGCCCGTCGAGATGAGGCGACCGACCCGTTGACAGAAATGCTGCGAAAAGGCGCACGCGAGCTGATTCAGCAG
GCCGTTGAGGCTGAGCTGGCAGCCTTCCTGGAAGGGTATCAAAACCGCCGCCTGGAGGATGGACGAGCAGCCGTCGTCCGTAATGGCCATTTGCCAGAGC
GCGAGATCCAGACAGGTATCGGTCCGGTAACGGTGCAGATTCCCAAGGTGCGCAGCAAGGACGGTGAGCCGGTGACGTTTCGGTCAGCACTGGTACCGCC
CTATGTGCGCAAGACCCGAAGCCTGGAAGCCGCTTTGCCTTGGCTGTACCTGAAAGGCGTCTCAACCGGCGAGATGGAGCAAGCGCTGTCAGCACTGGTC
GGACCTGAAGCCAAGGGACTGTCGGCCAGCACGGTATCGCGGCTCAAGCGCCAGTGGGCTGATGAGTATGATGCTTGGTGTAAGCGCCCGCTTGATCAAG
AGCGCTGGGTCTACATTTGGGCAGATGGGATCTACAGCGGACTGCGTTCAGAGGAGAGCAAGCTCTGTGCGCTGGTCATCATGGGTGTCAACGCGCGAGG
CGAGAAGCACTTTCTGGCGATCGAAGACGGTGAGCGCGAATCGACATTGAGCTGGACAGCGGTGCTGGAGGGACTCAAAGGGCGCGGTATGAACGCGCCT
GAACTGGCGGTTGGCGATGGCGCTATGGGGTTCTGGGCCGCACTGGAGTGTGTGTATCCATCAACACGCCAGCAACGCTGCTGGGTGCATAAAACGGCCA
ATGTCCTGAATCGCTTGCCAAAGGCCAGCCAGCCGAGAGCCAAGAAGGCGCTTCAGGCGATCTGGCATGCCGAGACGCGTGAGGATGCCGAGAAGGCCTT
TGATGCCTTTATCAGGACATATGACGCCAAGTACCCGAAAGTCGCCGAGTGCTTGCTGAAGGATCACGAAGAGCTGATGAGCTTCTTCGACTTTCCAGCG
AAGCATTGGCAGAGCATCCGGACGACGAACCCGATCGAATCCACGTTCGGGACGATACGGCACCGGACCAAGCGATCCAAGGGCTGCCTGTCGAGGAATG
GCATGCTGCACATGATGTTCAAACTGGGCATGTGCGCAGAAGAGAGATGGAGAAAGCTGCGGGGCTTTGAGCAACTGGCCAAAGTCATCACCGGCGTGAA
ATTCAGGGATGGAGAAGAGGTGACGGCAGTCAACCAGGACGCTGCTTGATCAGGCCGCTGAACACCACTCTTGACCATAACTC
CATGAACAAGAATACCGTTGTCGAGTTTGCCCGTCGAGATGAGGCGACCGACCCGTTGACAGAAATGCTGCGAAAAGGCGCACGCGAGCTGATTCAGCAG
GCCGTTGAGGCTGAGCTGGCAGCCTTCCTGGAAGGGTATCAAAACCGCCGCCTGGAGGATGGACGAGCAGCCGTCGTCCGTAATGGCCATTTGCCAGAGC
GCGAGATCCAGACAGGTATCGGTCCGGTAACGGTGCAGATTCCCAAGGTGCGCAGCAAGGACGGTGAGCCGGTGACGTTTCGGTCAGCACTGGTACCGCC
CTATGTGCGCAAGACCCGAAGCCTGGAAGCCGCTTTGCCTTGGCTGTACCTGAAAGGCGTCTCAACCGGCGAGATGGAGCAAGCGCTGTCAGCACTGGTC
GGACCTGAAGCCAAGGGACTGTCGGCCAGCACGGTATCGCGGCTCAAGCGCCAGTGGGCTGATGAGTATGATGCTTGGTGTAAGCGCCCGCTTGATCAAG
AGCGCTGGGTCTACATTTGGGCAGATGGGATCTACAGCGGACTGCGTTCAGAGGAGAGCAAGCTCTGTGCGCTGGTCATCATGGGTGTCAACGCGCGAGG
CGAGAAGCACTTTCTGGCGATCGAAGACGGTGAGCGCGAATCGACATTGAGCTGGACAGCGGTGCTGGAGGGACTCAAAGGGCGCGGTATGAACGCGCCT
GAACTGGCGGTTGGCGATGGCGCTATGGGGTTCTGGGCCGCACTGGAGTGTGTGTATCCATCAACACGCCAGCAACGCTGCTGGGTGCATAAAACGGCCA
ATGTCCTGAATCGCTTGCCAAAGGCCAGCCAGCCGAGAGCCAAGAAGGCGCTTCAGGCGATCTGGCATGCCGAGACGCGTGAGGATGCCGAGAAGGCCTT
TGATGCCTTTATCAGGACATATGACGCCAAGTACCCGAAAGTCGCCGAGTGCTTGCTGAAGGATCACGAAGAGCTGATGAGCTTCTTCGACTTTCCAGCG
AAGCATTGGCAGAGCATCCGGACGACGAACCCGATCGAATCCACGTTCGGGACGATACGGCACCGGACCAAGCGATCCAAGGGCTGCCTGTCGAGGAATG
GCATGCTGCACATGATGTTCAAACTGGGCATGTGCGCAGAAGAGAGATGGAGAAAGCTGCGGGGCTTTGAGCAACTGGCCAAAGTCATCACCGGCGTGAA
ATTCAGGGATGGAGAAGAGGTGACGGCAGTCAACCAGGACGCTGCTTGATCAGGCCGCTGAACACCACTCTTGACCATAACTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1248 bp | 415 aa | 102 | 1349 | + | No |
Chemistry : DDE
ORF sequence :
MNKNTVVEFARRDEATDPLTEMLRKGARELIQQAVEAELAAFLEGYQNRRLEDGRAAVVRNGHLPEREIQTGIGPVTVQIPKVRSKDGEPVTFRSALVPP
YVRKTRSLEAALPWLYLKGVSTGEMEQALSALVGPEAKGLSASTVSRLKRQWADEYDAWCKRPLDQERWVYIWADGIYSGLRSEESKLCALVIMGVNARG
EKHFLAIEDGERESTLSWTAVLEGLKGRGMNAPELAVGDGAMGFWAALECVYPSTRQQRCWVHKTANVLNRLPKASQPRAKKALQAIWHAETREDAEKAF
DAFIRTYDAKYPKVAECLLKDHEELMSFFDFPAKHWQSIRTTNPIESTFGTIRHRTKRSKGCLSRNGMLHMMFKLGMCAEERWRKLRGFEQLAKVITGVK
FRDGEEVTAVNQDAA
YVRKTRSLEAALPWLYLKGVSTGEMEQALSALVGPEAKGLSASTVSRLKRQWADEYDAWCKRPLDQERWVYIWADGIYSGLRSEESKLCALVIMGVNARG
EKHFLAIEDGERESTLSWTAVLEGLKGRGMNAPELAVGDGAMGFWAALECVYPSTRQQRCWVHKTANVLNRLPKASQPRAKKALQAIWHAETREDAEKAF
DAFIRTYDAKYPKVAECLLKDHEELMSFFDFPAKHWQSIRTTNPIESTFGTIRHRTKRSKGCLSRNGMLHMMFKLGMCAEERWRKLRGFEQLAKVITGVK
FRDGEEVTAVNQDAA
Blast result :
Comments
ISMahy14 is 81% aa similar to ISOan7.
References
1] Sarah Sonbol(2021) Direct submission.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Edwards,K. and Richardson,P. (2006) Direct GenBank submission.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Edwards,K. and Richardson,P. (2006) Direct GenBank submission.