ISMbov9
- Family IS1634
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP038861 | ND | Mycoplasma bovis | Mycoplasma bovis 16M Mycoplasma bovis Ningxia-1 Mycoplasma bovis 08M Mycoplasma bovis HB0801-P180 |
DNA section
IS Length : 1624 bp
Ends
IR Length : 30
IRL : TAAAAGTTTCCCGAAAAATTAACTATATAAAAATGCAAAAATAAGCGGTT
IRR : TAAAAGTTTCCCGAAAAATTAACTATATAAGATTTTTTCGATGAGTTCCA
Comments : Atypiqcal ends.
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTAAATCAAG | ATCAAT | TTATAACTTA | 6 |
DNA sequence
TAAAAGTTTCCCGAAAAATTAACTATATAAAAATGCAAAAATAAGCGGTTTGCATTATAAATTGTTATTTTCATAAACTAAAACAAGAGTTTTAAAAAAC
AAAGGCTCTTGTTTTTTTATCTTACAATTGAAAAAATTAGCAAAAATATGTTTAAAAATTTGCTTGTTTTTTTAAAAAATAACTATATAATTAACTATAT
AAAGGAGTTAATTATATATGGCAGTACCAGCAGAAATTAGAGCAATAGAAAGACCTAAAAATACAGTTGTCAAAAAATCAGGTTCAATGTGAGCAGTTAT
TGAAAGAGTTGGATGTATTAGAAAAAATGGAAATAACCAACCAGTTGAAGGCAAAGTTATAGGACATATAATTGATGGGAAATTTGTGCCAAAAGAAAAA
CTGAAAATAACTGTTTCAATGAAAAATTTTGGAGACTACGAAATAGCAAAATCAGTTTCTAAGGATCTATTGACTGATTTAAGCAATGTGTATCCGCAGG
ATATGGCAAAACACATATATGCTGTTGCTTTACTTCGTTCTATAAATCCAAGAATGACAAATAACAAATTGGATGAAGTGTTTAATGAATCATTTATGTC
AGTTGAAAGTCCTGAACTTAAACTTGGAAAAAATAATGTCTCGTCATTAATAAAATGAATTGGAAAAGACTATTCTAAGGTACTTGAATTTATTCAAAAC
AGGGTTAGCAAAATTGATGAGAGCAACAAAATTGCAATAGATGGAATGTTAAAAAACAATAATAGCAAAGTAAATTCATTAAATGATTTTTCATACAAAT
CAAAATTAAAAAATAGCAAAAACATATCTATATTAATTGCTTTTAATGTGACGACTAGAGATGTAATTTGTTCACTTCCATACTCTGGAAATTGTGTGGA
TGTCACTAGTTTTCCTGACTTTTTGGAGAAAACAGGAATAAATAAGGGAATAATTATAGGTGACAAAGGCATAAATAGCAGTGCACTAATGTCCAATGTT
GGCTTTATACATCCGCTCAAAAGATCACTAAAACTTTTAGAAGAAATTGATGCATACAATATGAAAGATAAAATAAACAGCAAAGATGAACCAACCTGAT
GTAAAAAGATATTTCACAATGGACTTTATTACTATGCTTTCAGGAACTTAAAACGTGCATCAAAGGAAGAACAAGACTTTATGTCTAGTAAAAAATTTTC
AATTGAAAGATATGAAAAAATTAAGCACAAATTCGGAACAATTGTATATGTATCAGATCAAGATATCACATGTGAAGATGCATTAAACTTATACAAGCAA
AGATGAGAAATAGAACTTGTTAACGATTTTTATAAAAATACATTAGAGTTAGAAACTGTTAGACAGCATGATGATTACAGTGTTTATGGTGATGAGTTTT
TGAATATGCTTACCCTTATAATCGGAAACAGAATAAAGAATAAATTTGCTGACTCAAGAATTTTAGAGACTAAAACTTATCGCGATGTAATGAAAATATT
TAAGCAATATAAAAAAATACAAATGCCATATAAAAATGACATTTGGTATGAAACTGAGCTCCCCAAAAAAAGTATGGAACTCATCGAAAAAATCTTATAT
AGTTAATTTTTCGGGAAACTTTTA
AAAGGCTCTTGTTTTTTTATCTTACAATTGAAAAAATTAGCAAAAATATGTTTAAAAATTTGCTTGTTTTTTTAAAAAATAACTATATAATTAACTATAT
AAAGGAGTTAATTATATATGGCAGTACCAGCAGAAATTAGAGCAATAGAAAGACCTAAAAATACAGTTGTCAAAAAATCAGGTTCAATGTGAGCAGTTAT
TGAAAGAGTTGGATGTATTAGAAAAAATGGAAATAACCAACCAGTTGAAGGCAAAGTTATAGGACATATAATTGATGGGAAATTTGTGCCAAAAGAAAAA
CTGAAAATAACTGTTTCAATGAAAAATTTTGGAGACTACGAAATAGCAAAATCAGTTTCTAAGGATCTATTGACTGATTTAAGCAATGTGTATCCGCAGG
ATATGGCAAAACACATATATGCTGTTGCTTTACTTCGTTCTATAAATCCAAGAATGACAAATAACAAATTGGATGAAGTGTTTAATGAATCATTTATGTC
AGTTGAAAGTCCTGAACTTAAACTTGGAAAAAATAATGTCTCGTCATTAATAAAATGAATTGGAAAAGACTATTCTAAGGTACTTGAATTTATTCAAAAC
AGGGTTAGCAAAATTGATGAGAGCAACAAAATTGCAATAGATGGAATGTTAAAAAACAATAATAGCAAAGTAAATTCATTAAATGATTTTTCATACAAAT
CAAAATTAAAAAATAGCAAAAACATATCTATATTAATTGCTTTTAATGTGACGACTAGAGATGTAATTTGTTCACTTCCATACTCTGGAAATTGTGTGGA
TGTCACTAGTTTTCCTGACTTTTTGGAGAAAACAGGAATAAATAAGGGAATAATTATAGGTGACAAAGGCATAAATAGCAGTGCACTAATGTCCAATGTT
GGCTTTATACATCCGCTCAAAAGATCACTAAAACTTTTAGAAGAAATTGATGCATACAATATGAAAGATAAAATAAACAGCAAAGATGAACCAACCTGAT
GTAAAAAGATATTTCACAATGGACTTTATTACTATGCTTTCAGGAACTTAAAACGTGCATCAAAGGAAGAACAAGACTTTATGTCTAGTAAAAAATTTTC
AATTGAAAGATATGAAAAAATTAAGCACAAATTCGGAACAATTGTATATGTATCAGATCAAGATATCACATGTGAAGATGCATTAAACTTATACAAGCAA
AGATGAGAAATAGAACTTGTTAACGATTTTTATAAAAATACATTAGAGTTAGAAACTGTTAGACAGCATGATGATTACAGTGTTTATGGTGATGAGTTTT
TGAATATGCTTACCCTTATAATCGGAAACAGAATAAAGAATAAATTTGCTGACTCAAGAATTTTAGAGACTAAAACTTATCGCGATGTAATGAAAATATT
TAAGCAATATAAAAAAATACAAATGCCATATAAAAATGACATTTGGTATGAAACTGAGCTCCCCAAAAAAAGTATGGAACTCATCGAAAAAATCTTATAT
AGTTAATTTTTCGGGAAACTTTTA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1389 bp | 462 aa | 218 | 1606 | + | No |
Chemistry : DDE
ORF sequence :
MAVPAEIRAIERPKNTVVKKSGSMWAVIERVGCIRKNGNNQPVEGKVIGHIIDGKFVPKEKLKITVSMKNFGDYEIAKSVSKDLLTDLSNVYPQDMAKHI
YAVALLRSINPRMTNNKLDEVFNESFMSVESPELKLGKNNVSSLIKWIGKDYSKVLEFIQNRVSKIDESNKIAIDGMLKNNNSKVNSLNDFSYKSKLKNS
KNISILIAFNVTTRDVICSLPYSGNCVDVTSFPDFLEKTGINKGIIIGDKGINSSALMSNVGFIHPLKRSLKLLEEIDAYNMKDKINSKDEPTWCKKIFH
NGLYYYAFRNLKRASKEEQDFMSSKKFSIERYEKIKHKFGTIVYVSDQDITCEDALNLYKQRWEIELVNDFYKNTLELETVRQHDDYSVYGDEFLNMLTL
IIGNRIKNKFADSRILETKTYRDVMKIFKQYKKIQMPYKNDIWYETELPKKSMELIEKILYS
YAVALLRSINPRMTNNKLDEVFNESFMSVESPELKLGKNNVSSLIKWIGKDYSKVLEFIQNRVSKIDESNKIAIDGMLKNNNSKVNSLNDFSYKSKLKNS
KNISILIAFNVTTRDVICSLPYSGNCVDVTSFPDFLEKTGINKGIIIGDKGINSSALMSNVGFIHPLKRSLKLLEEIDAYNMKDKINSKDEPTWCKKIFH
NGLYYYAFRNLKRASKEEQDFMSSKKFSIERYEKIKHKFGTIVYVSDQDITCEDALNLYKQRWEIELVNDFYKNTLELETVRQHDDYSVYGDEFLNMLTL
IIGNRIKNKFADSRILETKTYRDVMKIFKQYKKIQMPYKNDIWYETELPKKSMELIEKILYS
Blast result :
Comments
ISMbov9 is 53% aa similar to ISMbov5. The sequence is inserted in a copy of ISMbov1 (IS30 family).
References
1] Roshan Kumar, Joy Scaria (2019) Direct submission.
2] Zhang,L. (2019) Direct GenBank submission.
2] Zhang,L. (2019) Direct GenBank submission.