ISMae20

  • Family IS607
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP020664 ND Microcystis sp.
Microcystis aeruginosa NIES-843
Microcystis sp. MC19
DNA section
IS Length : 1896 bp

Ends


IR Length : 0

IRL : GTATTGTAAAGTTTTGTAAAAAATATATGCAAATGACTGCAAACAACTGC
IRR : ATAGTTACTAATTCTGTACGCAAATATTGCATCTAGAATTAGCTTTGTAC

Insertion site


Left flankDirect repeatRight flankDR Length
CCCTTCCTCTTAATACCGGAAGGATT0

DNA sequence

GTATTGTAAAGTTTTGTAAAAAATATATGCAAATGACTGCAAACAACTGCTAATATGGTTAGTGCAAGTTTACATTGCAGTTCACATGAAACTATCAGAT
TATGCTAAGAAAAAAGGGATCAGTTATGACACTGCTTGGAGAATGTGGAATCGAGGGCAGTTACAAGGAGAACGTCTTCCTACAGGAACAATTATTATTT
TTGAAGATGACCGTTCTTGCGGTGAAAATAAAGTAGCTATTTATGCGCGAGTTTCTAGTTCAGAAAATCAATCTAACTTAGAGACTCAGGCAAAAAGATT
GGAAGCTTATTGTATTGCGAAAGGCTATCAAATTGTTCGAGTAGTTAAAGAAGTAGGAAGTGGAGTCAATGATCATCGAAAGCTATTATTAAAACTTCTA
GAACAAACTGATTATAATTTGATTGTCGTAGAACATAAAGATCGTTTAAGCAGAGTAGGGTTTAATTATCTGAAAGTTCTTTTAACTCAAACAAATAGAG
ATCTAGAGGTCGTTAATCTAGCAGAAGAAAGAAAAGACGATTTAATGGAAGACTTCGTGAGCATAATTACCTCATTTTGCGCTCGATTATACTCATTAAG
ACGACGAAATAGAAAGACAGAATGTTTAATTAAATGCCTTGAGGAGAATGATGAAATTAGTTCAAAAACATCTAATTAAATTTAATCACAAAAATTATTC
AGTAATTGATAAATTAGGATTTTTATCGAAGAATCTGTATAATTGTGCTGTTTATTTAAACCGTCAAGTTTTCTTTTCACATCAACCATTTTTAACAATG
ACTGAGTTACATCATGCCTTAAAAATGAGTCCAGATTATCAAGCCTTACCCGCCAAAGTAAGTCAGTTAGTATTAAAGCAAGTAGAAAAAACCTTTAAAT
CCTACCAAAAAGCGAAAGAACAATACAAAAAATCGCCAGATAAATTTACAGGAGAGCCTAAGTTGCCAAGATACAAAGACAAGGAAAAAGGTAGAAACGT
TTTAACTTATAACTATCAAGCCATTTCTAAAAAAGCGTTGAAGCAAGGTTTAATCAAGCTATCAGGGACTAATTTAGAATTTAAAACTAATTTAAAGGAA
GTTTTAGAGGTCAGGATTATTCCTAAATTGGGTGCTTATTGTTTAGAGATTGTCTATGAACAACCATCCTCATCAAGTCAAGAGGGAGAAAGATATGCTT
TTATCGATTTAGGCTTAAATAACCTAGCTGCTGTTACCTCTAATATTCCCGAATTTCAGCCAACTTTAGTATGTGGAAAAGCCTTAAAATCCTGCAATCA
AAAGTACAACAAGACACTAGCTAAACTCAAATCGGAATTACCCAGTCTACAGAAGACCAGTAAAAGAATACAAGGTTTAACTTTAAAGCGTAATTGCCAG
GTGGATTATTACCTCCACACCGCTAGTAAATATATTATTGATAAATTACTAGCTCATCAAATTAACCTTTTAGTTATTGGTCATAATCAAGGCTGGAAAC
AAAACATTAATATTGGAGATAGAAATAACCAGTCGTTCGTAAATATTCCTCATTCAAGGTTGATCGAACAACTTACCTATAAAGCAAATTTAGTAGGAAT
AGAGGTCAAAACAACTAATGAAAGCTATACCTCTAAATGTAGTTTCTTAGACTTAGAGTCTATTCAAAAGCAAAAAAGCTATTTAGGCAAGAGAATTAAA
AGAGGACTATTCAGAAGCTCGTCGGGTTATTTCTATGGAGCAGATATTAATGGTTCCTTAAATATTGGAAGAAAGGTAGTCGGAGAGGCCGCCTTTAGCG
GGAATCCGATAGAGAGGTTCGTAGTTAACCCAGTACGGGTCAAAGCGTACAAAGCTAATTCTAGATGCAATATTTGCGTACAGAATTAGTAACTAT
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
594 bp197 aa86679+No
ORF function : Transposase
Chemistry : Serine

ORF sequence :

MKLSDYAKKKGISYDTAWRMWNRGQLQGERLPTGTIIIFEDDRSCGENKVAIYARVSSSENQSNLETQAKRLEAYCIAKGYQIVRVVKEVGSGVNDHRKL
LLKLLEQTDYNLIVVEHKDRLSRVGFNYLKVLLTQTNRDLEVVNLAEERKDDLMEDFVSIITSFCARLYSLRRRNRKTECLIKCLEENDEISSKTSN

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1239 bp412 aa6511889+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MKLVQKHLIKFNHKNYSVIDKLGFLSKNLYNCAVYLNRQVFFSHQPFLTMTELHHALKMSPDYQALPAKVSQLVLKQVEKTFKSYQKAKEQYKKSPDKFT
GEPKLPRYKDKEKGRNVLTYNYQAISKKALKQGLIKLSGTNLEFKTNLKEVLEVRIIPKLGAYCLEIVYEQPSSSSQEGERYAFIDLGLNNLAAVTSNIP
EFQPTLVCGKALKSCNQKYNKTLAKLKSELPSLQKTSKRIQGLTLKRNCQVDYYLHTASKYIIDKLLAHQINLLVIGHNQGWKQNINIGDRNNQSFVNIP
HSRLIEQLTYKANLVGIEVKTTNESYTSKCSFLDLESIQKQKSYLGKRIKRGLFRSSSGYFYGADINGSLNIGRKVVGEAAFSGNPIERFVVNPVRVKAY
KANSRCNICVQN

 

Blast result :
Comments
ISMae20 is 78% aa similar to ISMae17.
References
1] ISfinder submission (2018)
2] Kaneko,T., Nakajima,N., Okamoto,S., Suzuki,I., Tanabe,Y., Tamaoki,M., Nakamura,Y., Kasai,F., Watanabe,A., Kawashima,K., Kishida,Y., Ono,A., Shimizu,Y., Takahashi,C., Minami,C., Fujishiro,T., Kohara,M., Katoh,M., Nakazaki,N., Nakayama,S., Yamada,M., Tabata,S. and Watanabe,M.M. (2007) DNA Res. 14 (6), 247-256.
3] Chun,S.-J., Cui,Y., Ko,S.-R., Oh,H.-S., Srivastava,A., Jeong,H., Ahn,C.-Y. and Oh,H.-M. (2017) Direct GenBank submission.