ISMae17

  • Family IS607
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010296 ND Microcystis aeruginosa
Microcystis aeruginosa NIES-843
DNA section
IS Length : 1921 bp

Ends


IR Length : 0

IRL : GTATTGTAAAGTTTCAATACAAATATAGTCAGATATAGTCAAGCATGGTC
IRR : ATAGTTAGTAAAAGTATAGTCAAATATAGACAGACTGAATTCCATTTCAG

Insertion site


Left flankDirect repeatRight flankDR Length
ACTCAACGGATTTATAATATGTCCAATTT0

DNA sequence

GTATTGTAAAGTTTCAATACAAATATAGTCAGATATAGTCAAGCATGGTCATATATAGATATGAAACTATCAGACTATGCAAAAAAAACAGGAATAAGTT
ATCGAACGGCTTGGAGGTGGTGGAAACAAGGGAATTTAACAGGTTATCAATTGCCTTCTGGTACAATTATCATAACGGATGACAACCATTCAAAACCCGA
CTTGATAGCCTGCATTTATGCAAGAGTTTCCAGTGCCGAAAATAAAGACAATCTAGATAGACAAGCTGACCGATTAAAAGATTATGCTGTTGCCAGAGGC
TACAAAATCTACAAAGTTGTCAAAGAAGTAGGCAGTGGATTAAACGATAATCGCCAACAATTAGCCAAAATTCTAGTTGACCCCAATTATAATGTTTTAA
TTGTTGAACACAAAGACCGTCTAGCCAGATTTGGGACTAATTATCTAGAAATCTTGTTAAAAGAACTAGATAAAAAAGTGGAGATTGTCAATCAAAGTGA
GGATAATCAGGATGAGTTGATGTCAGATTTAATAGCCATTATAACCTCTTTTTGTTCTCGAATTTACGGATTAAGAAGGTCGAAAAGAAAGACAGAAAAG
ATTATAGCTGAGTTAAAAGACAACGGATAATAATGTTAGTAGCAGAAAGACACATTATCAAGAAAGGACATAGATTTTGGGCTGAGATAGATAATTTATC
TTGGCAGTCTAAAAATCTCTACAACTCAGCCAATTATTTAATCCGACAAAACTTCATTTATGGTCATGGCTATTTGACCTATAATCAGATGGCCTCTCTG
AGGTCAAAGACAGAACAGTATCAAGCTTTACCCGCTAAAGTTTCCCAACAAGTTTTGAGAGGATTAGACAAAAACTGGAAATCATTTTTTGCCGCTTCAT
CGGAGTTTAAAAGTCACCCCGATAAATTTCTGGTCAAACCCAAAATCCCTAGCTATAAGGAGCCAAAAAAAGGACGAAATCTCTTAGTTTACACGATTCA
AGCTATAAGCAAAGTAGGTCTTAGGCAAGGGTTAGTCAAACTATCAGGTACTTCAATTGCCTTGCCGACGAGAGTAGCAGAGCGCATAGCAGAAGTCAGA
ATAGTTCCTAAATGTGATTGTTATGTAATCGAGGTAATTTATGAGAAAACTGAACAGTTCTTAGCTCCTAATGAAAAGATAGCTGCGCTAGATTTAGGCA
TAGATAATTTGATGGCTGTAACTTCAAATCAACCGGACTTTATCCCTTTGTTGATTAATGGCAGACCGTTAAAAAGCCTGAATCAATTTTATAACCAACG
TCGGGCTAAGTTACAATCTCTGTTAAAAGGCAATCGTCAAAGTTCCCAGAGGATTCGCCGTTTAACTCGCTGTCGTAATCAGAAAGTAGATGATTATCTT
CATCAGGCTAGTCGTTATTTAGTCAATCTCTTAGTTGACCAAGAGATAACAACTTTAGTAATTGGGAAAAATGACGGTTGGAAACAAGAAGTAAACTTAG
GAAAAGTCAACAATCAAAAATTTGTGACCATCCCTCATGCTCGATTAATTGAGATGATTAGTTATAAATGTCAATTAGAAGGAATCTCTGTGATTCTTCA
AGAAGAATCCTATACCTCAGCTTCTAATTTTTTGAATGACGATCCTCTCCCCGTTTATGGACAGATAACTGAAAAGCCAGTGTTTTCAGGAAACTGAATT
TTACGAGGGTTATATCGTACAGATAAGGGGATTCTGGTTCAATCTGATGTCATGGGTTCCTACAATATTTTACGAAAAGCATTCCCAAATGCGTTTAACT
GCTATGGGATAGAGAGGTGCGTAGTTCACCCAAGGAGAATCAATCTCTCGAAGTAAAAGTGAAGGGAATTTCTGAAATGGAATTCAGTCTGTCTATATTT
GACTATACTTTTACTAACTAT
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
570 bp189 aa61630+No
ORF function : Transposase
Chemistry : Serine

ORF sequence :

MKLSDYAKKTGISYRTAWRWWKQGNLTGYQLPSGTIIITDDNHSKPDLIACIYARVSSAENKDNLDRQADRLKDYAVARGYKIYKVVKEVGSGLNDNRQQ
LAKILVDPNYNVLIVEHKDRLARFGTNYLEILLKELDKKVEIVNQSEDNQDELMSDLIAIITSFCSRIYGLRRSKRKTEKIIAELKDNG

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1065 bp354 aa6331697+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MLVAERHIIKKGHRFWAEIDNLSWQSKNLYNSANYLIRQNFIYGHGYLTYNQMASLRSKTEQYQALPAKVSQQVLRGLDKNWKSFFAASSEFKSHPDKFL
VKPKIPSYKEPKKGRNLLVYTIQAISKVGLRQGLVKLSGTSIALPTRVAERIAEVRIVPKCDCYVIEVIYEKTEQFLAPNEKIAALDLGIDNLMAVTSNQ
PDFIPLLINGRPLKSLNQFYNQRRAKLQSLLKGNRQSSQRIRRLTRCRNQKVDDYLHQASRYLVNLLVDQEITTLVIGKNDGWKQEVNLGKVNNQKFVTI
PHARLIEMISYKCQLEGISVILQEESYTSASNFLNDDPLPVYGQITEKPVFSGN

 

Blast result :
Comments
ISMae17 is 75% (transposase) aa similar to ISAfe10.
References
1] ISfinder submission (2018)
2] Kaneko,T., Nakajima,N., Okamoto,S., Suzuki,I., Tanabe,Y., Tamaoki,M., Nakamura,Y., Kasai,F., Watanabe,A., Kawashima,K., Kishida,Y., Ono,A., Shimizu,Y., Takahashi,C., Minami,C., Fujishiro,T., Kohara,M., Katoh,M., Nakazaki,N., Nakayama,S., Yamada,M., Tabata,S. and Watanabe,M.M. (2007) DNA Res. 14 (6), 247-256.