ISMbov4
- Family IS3
- Group IS150
Isoform Synonym(s) ISMbov7
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP002513 | ND | Mycoplasma bovis | Mycoplasma bovis Hubei-1 |
DNA section
IS Length : 1340 bp
Ends
IR Length : 23/26
IRL : TACACTAGGACAAAAAAAGTAGACATCAGCAAATTTGCTGATGTTTTTTG
IRR : TAAACTAGGACAATAAAAATAGACATTAAATTTTTATTTTTTACAAAACT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATAAAAAACCATCTC | TTA | AATAGTGGCGTTCTT | 3 |
DNA sequence
TACACTAGGACAAAAAAAGTAGACATCAGCAAATTTGCTGATGTTTTTTGTTGGAGATAAAAATGGCTAAGCAGTTAAGTGTTAATGAATGGAAATATTT
GTTTGAAAAATACGAAAAATATAGATCTGGGGAACTCACTAAAAAATGTTTTTTGAATGAAATGATGAAAATAAAAAATGTAAAACACATTTCTGACGAT
CAATGAAAGAGATTAGTGAATAAGTATAAAAGATATAATTTAGGCATGAACATAGAATCAATGAGTGGAAGATCGCCTAAAAAAGGTAAAGGTTCCGGCA
GGCCAAAAAAGACAAAATCAAATGACGAAATATTAGATGAATTTTTAAATGATCTAAATAAAGAAGATTTGATAAAGATAATAAAAATAATTTCTACAGA
TGACGAAATTAAGAAGATAAAAAAGGACAAATTTAAAGAAACGGTTACCAAAATAAAGAATTCATTTCCCTTTAAGGTATCGAATAAAGTTATTATGTCA
TTGCTTAAAATTAAAAAATCTACATACTATAAAAAGCTAAAAAAATTGAAAATGATTAAAGAAAAAAATCTTGAATTAGAGAATGCTGTGGTTCAAGCTT
TTAAAGAAACTGGAGGCATTTTCGGCAGAGAAAGATTGGCTGCTTATATTAGCAAAAATAAACAAATAAAGCTTAATTATAGGACTTTAGGTAGAATAAT
GAAAAAACTTGGACTAGTTTGTAGAATAAGAAAAGCAAAAAGAACAAAAGAATCTAAGAATGTAGCTGTAACGTTTCAAAATATTGCTTCTCGTGACTAT
GATGGCATATATAATGATATCTATGCTACTGATGTTACATACATACCTTCGCCAATAGATGTTGATCAAAATTTTGTATATATGTCGGCTGTTATTCATC
ATAAAACCAAAAAAATTTTAGGTTTTAACCTGTCTTTGTACAATGATAATTCATTGGTTATTGATAATATTAAAAAAGTTAATTTTCCCAAAAATTTTGT
TATACATTCTGACCACGGAAGTCAATATTCATCTAAAGAATATCTTCAGTTAATTGAAAGACTTAATGGAAAAGTATCAATGTCAAGAATTGGCAATTCT
CTTGACAATAGAGAAATTGAATACTTTTTTTCAGTACTTAAAACTGAAATGTTTGAAAATTTTGAGAAAAGTGTTAAGAAAATGACGCTTAAGGAACTTG
AGCGTCATCTAAATAGATTCATTGATTGGTATAATAATGAGCGAATGCTCAAGAAATTTAATTACAAAACTCCACATGAATTGTGAGTGGAGTTTTGTAA
AAAATAAAAATTTAATGTCTATTTTTATTGTCCTAGTTTA
GTTTGAAAAATACGAAAAATATAGATCTGGGGAACTCACTAAAAAATGTTTTTTGAATGAAATGATGAAAATAAAAAATGTAAAACACATTTCTGACGAT
CAATGAAAGAGATTAGTGAATAAGTATAAAAGATATAATTTAGGCATGAACATAGAATCAATGAGTGGAAGATCGCCTAAAAAAGGTAAAGGTTCCGGCA
GGCCAAAAAAGACAAAATCAAATGACGAAATATTAGATGAATTTTTAAATGATCTAAATAAAGAAGATTTGATAAAGATAATAAAAATAATTTCTACAGA
TGACGAAATTAAGAAGATAAAAAAGGACAAATTTAAAGAAACGGTTACCAAAATAAAGAATTCATTTCCCTTTAAGGTATCGAATAAAGTTATTATGTCA
TTGCTTAAAATTAAAAAATCTACATACTATAAAAAGCTAAAAAAATTGAAAATGATTAAAGAAAAAAATCTTGAATTAGAGAATGCTGTGGTTCAAGCTT
TTAAAGAAACTGGAGGCATTTTCGGCAGAGAAAGATTGGCTGCTTATATTAGCAAAAATAAACAAATAAAGCTTAATTATAGGACTTTAGGTAGAATAAT
GAAAAAACTTGGACTAGTTTGTAGAATAAGAAAAGCAAAAAGAACAAAAGAATCTAAGAATGTAGCTGTAACGTTTCAAAATATTGCTTCTCGTGACTAT
GATGGCATATATAATGATATCTATGCTACTGATGTTACATACATACCTTCGCCAATAGATGTTGATCAAAATTTTGTATATATGTCGGCTGTTATTCATC
ATAAAACCAAAAAAATTTTAGGTTTTAACCTGTCTTTGTACAATGATAATTCATTGGTTATTGATAATATTAAAAAAGTTAATTTTCCCAAAAATTTTGT
TATACATTCTGACCACGGAAGTCAATATTCATCTAAAGAATATCTTCAGTTAATTGAAAGACTTAATGGAAAAGTATCAATGTCAAGAATTGGCAATTCT
CTTGACAATAGAGAAATTGAATACTTTTTTTCAGTACTTAAAACTGAAATGTTTGAAAATTTTGAGAAAAGTGTTAAGAAAATGACGCTTAAGGAACTTG
AGCGTCATCTAAATAGATTCATTGATTGGTATAATAATGAGCGAATGCTCAAGAAATTTAATTACAAAACTCCACATGAATTGTGAGTGGAGTTTTGTAA
AAAATAAAAATTTAATGTCTATTTTTATTGTCCTAGTTTA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1245 bp | 414 aa | 63 | 1307 | + | No |
Chemistry : DDE
ORF sequence :
MAKQLSVNEWKYLFEKYEKYRSGELTKKCFLNEMMKIKNVKHISDDQWKRLVNKYKRYNLGMNIESMSGRSPKKGKGSGRPKKTKSNDEILDEFLNDLNK
EDLIKIIKIISTDDEIKKIKKDKFKETVTKIKNSFPFKVSNKVIMSLLKIKKSTYYKKLKKLKMIKEKNLELENAVVQAFKETGGIFGRERLAAYISKNK
QIKLNYRTLGRIMKKLGLVCRIRKAKRTKESKNVAVTFQNIASRDYDGIYNDIYATDVTYIPSPIDVDQNFVYMSAVIHHKTKKILGFNLSLYNDNSLVI
DNIKKVNFPKNFVIHSDHGSQYSSKEYLQLIERLNGKVSMSRIGNSLDNREIEYFFSVLKTEMFENFEKSVKKMTLKELERHLNRFIDWYNNERMLKKFN
YKTPHELWVEFCKK
EDLIKIIKIISTDDEIKKIKKDKFKETVTKIKNSFPFKVSNKVIMSLLKIKKSTYYKKLKKLKMIKEKNLELENAVVQAFKETGGIFGRERLAAYISKNK
QIKLNYRTLGRIMKKLGLVCRIRKAKRTKESKNVAVTFQNIASRDYDGIYNDIYATDVTYIPSPIDVDQNFVYMSAVIHHKTKKILGFNLSLYNDNSLVI
DNIKKVNFPKNFVIHSDHGSQYSSKEYLQLIERLNGKVSMSRIGNSLDNREIEYFFSVLKTEMFENFEKSVKKMTLKELERHLNRFIDWYNNERMLKKFN
YKTPHELWVEFCKK
Blast result :
Comments
ISMbov4 is 70% aa similar to ISMmy2.
Inserted into an ISMbov2 (IS1634 family) copy.
Inserted into an ISMbov2 (IS1634 family) copy.
References
1] ISfinder submission (2018)
2] Li,Y., Zheng,H., Liu,Y., Jiang,Y., Xin,J., Chen,W. and Song,Z. (2011) PLoS ONE 6 (6), E20999.
2] Li,Y., Zheng,H., Liu,Y., Jiang,Y., Xin,J., Chen,W. and Song,Z. (2011) PLoS ONE 6 (6), E20999.