ISMyo2
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
KP861986 | ND | Mycobacterium yongonense | Mycobacterium yongonense DSM 45126 |
DNA section
IS Length : 2630 bp
Ends
IR Length : 21/28
IRL : TGTCGGCTGCCAGGGACAAGGGGCCAGCTCGGCGCCGGTTTTGCCATGAG
IRR : TGTCGCTTGCCAGGGTGATGGGACCACCGTTTTGCCATGAGCATGGGACC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CATTGCCGGAATTTTCGACTT | CGCTTGATCTACTATCTGTG | 0 |
DNA sequence
TGTCGGCTGCCAGGGACAAGGGGCCAGCTCGGCGCCGGTTTTGCCATGAGCATGGGACCACCCGTTTGCCAGTGATGGGACCACCTGGCTAGCTGTTTTG
CCAGTTATGGGACCACCCGGCGTGGCGTCGGGGCTTCCGGTTGCTCGGCCGCTGTATTGGCCGAATGAGCTACCGGGAGGTTTCTGTGATCGAAGTCAAG
GAGATGTTGCGGCTGTGGCTGGATGGTCGCGGGTATCGGGAGGTGGCCCGGCTCTCGGGCACCGACCGCAAAACGGTGCGCCGGTATGTGGATCGGGCGC
GCGCGTGCGGGCTGGACCGTGATGGCGACGCCTGTCAGCTGACTGACGAGCTGTTGGCGGCGGTGATCGCCGAGGTGCGGCCGAGCCGGCCCAACGGCAA
GAGCCAGACGTGGGAGATCATCGACACTCAGCGTGAGCAGGTCCAGGCGTGGCTGAAACAGGACTTGACCTTGACGAAGGTGCACACGCTACTGGGCAGG
CGCGGAGTGGTGGTGTCGTATCGCACGTTGCATCGATATGCCACAACGGAATTGGGCTTTGGGCAACGGCGGGCCACGGTGCCGGTGGCCGATTGTGAGC
CCGGCAGCGAACTGCAGGTCGACTTCGGTCGACTCGGGCTGCTCACCGACATCGAGGACGGCCGCCGGCGGGTGGTGCATGGGTTGATCTTCACCGCGGT
GTATTCGCGGCACATGTTCGTTTGGCCCACCTACCGGCAGACCCTGGGCGAGGTGATCGCCGGGTTCGAAGCGGCGTGGGTGTTCTTTGGTGGGGTGTTC
GCGGTGGTGATCCCGGACAACATGAAGACCATCGTGGATAAGGCTGATGCGACCGACGCGAAGCTCAACGACGCATTTCGCGAATATGCCCAGGCTCGGG
GATTCGCTGTGGACCCCACCCGCATCCGCAGCCCCCGCGATAAGCCTCGCGTCGAACGCTGCGTCCAATATGTGAGATCGAATTTCTTTGCCGGAGAAGA
CTTTCGGAACCTGAGTGACTGCCGCGCGCGAGCTGAGCAGTGGTGTGGGCAGGTGGCCGGGATGCGAATCCACGGCACCACCCGGTGCCGCCCGGTCGAG
GTGTTCGCCGCCGAGGAGCTACCCCAACTCAAGCCGGTGCCCAACGAGGTGTTCGACATCCCGACCTGGAGCCGGCCCAAGGTGGCCCCGGATCGGCATG
TGCAGATCGCGCGGGCGCTTTACAGCGTTCCCGGCGAGCTGATTGGCCGCCGCCTCGATGCCCGCGTGGATGCGCATACGGTCAAACTGTATTGGCGCGG
TGAGCTGATCAAGGTCCACCCCGTGGTGGGTCCGGGGCGCCGCCACACCGATCCCGCCGACCTGCCCGCTGAGGTGTCGGTCTATGCCATGCGGGATCTG
AACACGTTGCAGCGCAAGGCAGCCACCCACGGCACCCATGTCGGCGTCTACGCCGCCGCGGTGTTAGAACACCCGCTGCCGTGGACCAAGATGCGCCAGG
TCTACCGCCTGTTGGGATTGGTGCGCCGCCACGGCGCGGAGGCGGTCGATGATGCCTGCCGACGCGCGCTGGACGCCGAGGTCATCGACGTCGGCCTGAT
CGAGCGCATGCTCACCCGTGGCGCCGGTGCGCAGCTGCCGCTGATCCCCAAGCCGTCGCCCACGGCATCCAGATTCGTGCGCGCCGCCACTGACTTTACG
GTGCGGAGGCCATCATGAGCCCCGCCCGTCCTGACGCCACCCCAGCGGTCAAGCCGATCGAGATCTCTGCAGACCTCAAAGTCCTGATGCGCCGTCTTAA
GCTCGGCCAGCTGCTCGACACCCTGCCCGAACGGCTCGCCTTGGCACGATCCAATCGGTTGCCGCATCACGATTTCCTGGAGATGCTGCTGGCCGATGAG
GTCACCCGCCGCGACCGCAAATCCGCCCAACTACGCGCCAAGGCGGCCCGTCTGGATCCGCAGATGCAGTTACAGGCCTGGGACGATACCGCCGCGGTCA
GCTACGACCGCCAGTTGTGGGCAGAGTTGACCTCGCTGCGGTTTTTGGCCGACGCCTACAACGTGCTCATCATGGGCCCGGTCGGGGTCGGAAAAACGTT
CCTGGCCAACGCCTTAGGACACATCGCGGTCCGACGTCACCACAGCGTGCACACCGAACGCGCCGACAAACTCTTCAAACGCCTACGCGGGGCACGGCTA
GACGGCAGCTATGAAGACGAGGTACGCAAACTGCACCGCGTCGAGCTACTCATCATCGATGACCTCGCGTTGCACCGGCTTGAAACCACCGAGACCAATG
ACTTCTATGAAATCATCGTGGAACGCCACCGCACCGCCTCAACGATCATCACCAGCAACCGCGAACCCCCAGAGATTCTCACCATGATGGCCGACCCACT
GCTGGCGCAGTCGGCGATGGACCGGCTCCAATCCGCGGCCTACGAACTCGTCGTCGAAGGCGAGTCCTACCGGCAACGTCAGAAACCCCGCCCCGCAAAG
CCGGTCAATTCGGACCAGCCGAATTGACCAGCAGCCATCTCGTCAGTCACCATCACAACGGCCAGTAACCGGAAACAACCGGTCCCATGCTCATGGCAAA
ACGGTGGTCCCATCACCCTGGCAAGCGACA
CCAGTTATGGGACCACCCGGCGTGGCGTCGGGGCTTCCGGTTGCTCGGCCGCTGTATTGGCCGAATGAGCTACCGGGAGGTTTCTGTGATCGAAGTCAAG
GAGATGTTGCGGCTGTGGCTGGATGGTCGCGGGTATCGGGAGGTGGCCCGGCTCTCGGGCACCGACCGCAAAACGGTGCGCCGGTATGTGGATCGGGCGC
GCGCGTGCGGGCTGGACCGTGATGGCGACGCCTGTCAGCTGACTGACGAGCTGTTGGCGGCGGTGATCGCCGAGGTGCGGCCGAGCCGGCCCAACGGCAA
GAGCCAGACGTGGGAGATCATCGACACTCAGCGTGAGCAGGTCCAGGCGTGGCTGAAACAGGACTTGACCTTGACGAAGGTGCACACGCTACTGGGCAGG
CGCGGAGTGGTGGTGTCGTATCGCACGTTGCATCGATATGCCACAACGGAATTGGGCTTTGGGCAACGGCGGGCCACGGTGCCGGTGGCCGATTGTGAGC
CCGGCAGCGAACTGCAGGTCGACTTCGGTCGACTCGGGCTGCTCACCGACATCGAGGACGGCCGCCGGCGGGTGGTGCATGGGTTGATCTTCACCGCGGT
GTATTCGCGGCACATGTTCGTTTGGCCCACCTACCGGCAGACCCTGGGCGAGGTGATCGCCGGGTTCGAAGCGGCGTGGGTGTTCTTTGGTGGGGTGTTC
GCGGTGGTGATCCCGGACAACATGAAGACCATCGTGGATAAGGCTGATGCGACCGACGCGAAGCTCAACGACGCATTTCGCGAATATGCCCAGGCTCGGG
GATTCGCTGTGGACCCCACCCGCATCCGCAGCCCCCGCGATAAGCCTCGCGTCGAACGCTGCGTCCAATATGTGAGATCGAATTTCTTTGCCGGAGAAGA
CTTTCGGAACCTGAGTGACTGCCGCGCGCGAGCTGAGCAGTGGTGTGGGCAGGTGGCCGGGATGCGAATCCACGGCACCACCCGGTGCCGCCCGGTCGAG
GTGTTCGCCGCCGAGGAGCTACCCCAACTCAAGCCGGTGCCCAACGAGGTGTTCGACATCCCGACCTGGAGCCGGCCCAAGGTGGCCCCGGATCGGCATG
TGCAGATCGCGCGGGCGCTTTACAGCGTTCCCGGCGAGCTGATTGGCCGCCGCCTCGATGCCCGCGTGGATGCGCATACGGTCAAACTGTATTGGCGCGG
TGAGCTGATCAAGGTCCACCCCGTGGTGGGTCCGGGGCGCCGCCACACCGATCCCGCCGACCTGCCCGCTGAGGTGTCGGTCTATGCCATGCGGGATCTG
AACACGTTGCAGCGCAAGGCAGCCACCCACGGCACCCATGTCGGCGTCTACGCCGCCGCGGTGTTAGAACACCCGCTGCCGTGGACCAAGATGCGCCAGG
TCTACCGCCTGTTGGGATTGGTGCGCCGCCACGGCGCGGAGGCGGTCGATGATGCCTGCCGACGCGCGCTGGACGCCGAGGTCATCGACGTCGGCCTGAT
CGAGCGCATGCTCACCCGTGGCGCCGGTGCGCAGCTGCCGCTGATCCCCAAGCCGTCGCCCACGGCATCCAGATTCGTGCGCGCCGCCACTGACTTTACG
GTGCGGAGGCCATCATGAGCCCCGCCCGTCCTGACGCCACCCCAGCGGTCAAGCCGATCGAGATCTCTGCAGACCTCAAAGTCCTGATGCGCCGTCTTAA
GCTCGGCCAGCTGCTCGACACCCTGCCCGAACGGCTCGCCTTGGCACGATCCAATCGGTTGCCGCATCACGATTTCCTGGAGATGCTGCTGGCCGATGAG
GTCACCCGCCGCGACCGCAAATCCGCCCAACTACGCGCCAAGGCGGCCCGTCTGGATCCGCAGATGCAGTTACAGGCCTGGGACGATACCGCCGCGGTCA
GCTACGACCGCCAGTTGTGGGCAGAGTTGACCTCGCTGCGGTTTTTGGCCGACGCCTACAACGTGCTCATCATGGGCCCGGTCGGGGTCGGAAAAACGTT
CCTGGCCAACGCCTTAGGACACATCGCGGTCCGACGTCACCACAGCGTGCACACCGAACGCGCCGACAAACTCTTCAAACGCCTACGCGGGGCACGGCTA
GACGGCAGCTATGAAGACGAGGTACGCAAACTGCACCGCGTCGAGCTACTCATCATCGATGACCTCGCGTTGCACCGGCTTGAAACCACCGAGACCAATG
ACTTCTATGAAATCATCGTGGAACGCCACCGCACCGCCTCAACGATCATCACCAGCAACCGCGAACCCCCAGAGATTCTCACCATGATGGCCGACCCACT
GCTGGCGCAGTCGGCGATGGACCGGCTCCAATCCGCGGCCTACGAACTCGTCGTCGAAGGCGAGTCCTACCGGCAACGTCAGAAACCCCGCCCCGCAAAG
CCGGTCAATTCGGACCAGCCGAATTGACCAGCAGCCATCTCGTCAGTCACCATCACAACGGCCAGTAACCGGAAACAACCGGTCCCATGCTCATGGCAAA
ACGGTGGTCCCATCACCCTGGCAAGCGACA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1578 bp | 525 aa | 141 | 1718 | + | No |
Chemistry : DDE
ORF sequence :
MLGRCIGRMSYREVSVIEVKEMLRLWLDGRGYREVARLSGTDRKTVRRYVDRARACGLDRDGDACQLTDELLAAVIAEVRPSRPNGKSQTWEIIDTQREQ
VQAWLKQDLTLTKVHTLLGRRGVVVSYRTLHRYATTELGFGQRRATVPVADCEPGSELQVDFGRLGLLTDIEDGRRRVVHGLIFTAVYSRHMFVWPTYRQ
TLGEVIAGFEAAWVFFGGVFAVVIPDNMKTIVDKADATDAKLNDAFREYAQARGFAVDPTRIRSPRDKPRVERCVQYVRSNFFAGEDFRNLSDCRARAEQ
WCGQVAGMRIHGTTRCRPVEVFAAEELPQLKPVPNEVFDIPTWSRPKVAPDRHVQIARALYSVPGELIGRRLDARVDAHTVKLYWRGELIKVHPVVGPGR
RHTDPADLPAEVSVYAMRDLNTLQRKAATHGTHVGVYAAAVLEHPLPWTKMRQVYRLLGLVRRHGAEAVDDACRRALDAEVIDVGLIERMLTRGAGAQLP
LIPKPSPTASRFVRAATDFTVRRPS
VQAWLKQDLTLTKVHTLLGRRGVVVSYRTLHRYATTELGFGQRRATVPVADCEPGSELQVDFGRLGLLTDIEDGRRRVVHGLIFTAVYSRHMFVWPTYRQ
TLGEVIAGFEAAWVFFGGVFAVVIPDNMKTIVDKADATDAKLNDAFREYAQARGFAVDPTRIRSPRDKPRVERCVQYVRSNFFAGEDFRNLSDCRARAEQ
WCGQVAGMRIHGTTRCRPVEVFAAEELPQLKPVPNEVFDIPTWSRPKVAPDRHVQIARALYSVPGELIGRRLDARVDAHTVKLYWRGELIKVHPVVGPGR
RHTDPADLPAEVSVYAMRDLNTLQRKAATHGTHVGVYAAAVLEHPLPWTKMRQVYRLLGLVRRHGAEAVDDACRRALDAEVIDVGLIERMLTRGAGAQLP
LIPKPSPTASRFVRAATDFTVRRPS
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
813 bp | 270 aa | 1715 | 2527 | + | No |
AG : IS21 helper
ORF sequence :
MSPARPDATPAVKPIEISADLKVLMRRLKLGQLLDTLPERLALARSNRLPHHDFLEMLLADEVTRRDRKSAQLRAKAARLDPQMQLQAWDDTAAVSYDRQ
LWAELTSLRFLADAYNVLIMGPVGVGKTFLANALGHIAVRRHHSVHTERADKLFKRLRGARLDGSYEDEVRKLHRVELLIIDDLALHRLETTETNDFYEI
IVERHRTASTIITSNREPPEILTMMADPLLAQSAMDRLQSAAYELVVEGESYRQRQKPRPAKPVNSDQPN
LWAELTSLRFLADAYNVLIMGPVGVGKTFLANALGHIAVRRHHSVHTERADKLFKRLRGARLDGSYEDEVRKLHRVELLIIDDLALHRLETTETNDFYEI
IVERHRTASTIITSNREPPEILTMMADPLLAQSAMDRLQSAAYELVVEGESYRQRQKPRPAKPVNSDQPN
Blast result :
Comments
ISMyo2 is 51% (transposase) aa similar to ISMt2.
References
1] ISfinder submission (2018)
2] Kim,B.J., Kim,K., Kim,B.R., Kook,Y.H. and Kim,B.J. (2015) BMC Genomics 16 (1), 794
2] Kim,B.J., Kim,K., Kim,B.R., Kook,Y.H. and Kim,B.J. (2015) BMC Genomics 16 (1), 794