ISMlu13
- Family ISL3
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP001628 | ND | Micrococcus luteus | Micrococcus luteus NCTC 2665 |
DNA section
IS Length : 1486 bp
Ends
IR Length : 20/22
IRL : GGCTCTTCCCAGTTGAGCGTGGGGGTGTCGTGAGTCAAGGGCCCGTGCCC
IRR : GGCTCTTCACACTTGAGCGTGGAGTCCTGCTCGAGGGTGGATCTGGGAGC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GTGCAGCATG | GCTTTCAC | GGCCGGCCAC | 8 |
DNA sequence
GGCTCTTCCCAGTTGAGCGTGGGGGTGTCGTGAGTCAAGGGCCCGTGCCCTTGCAAGAGGATGGATTTTGCGAAGAATCTAACCTCGATCACGAAGGACA
CGAGCCATGTCCCAGCGTACGCGCGCTGCCTTGCCCCTGCCTGCCCACGCCGCTGCCGAGCACCACGTCCGTGCGGCGGCATCGGTGGTGTTCAACCTGG
AGGGATACACCGTCCTTCAGGCCCTCGACCGGCCACTGGGAGGTAGGCGTGTCGTTGTGGCCGCCGATGCCGCCGAGGGGGCCTGCCCGGGCTGCGGGGT
GTTCTCGGGCCGGGTGCACCAGCGGGTCCGCCAGTCCGTGAAGGACATCCCTGTCGGTGGGGACCTGTTGGAGTTGGTTGTCGTCAAGCCCAGGTTCCTG
TGCGCCGAGGGGGCCTGCCCGCGCCGGACCTTCACGCAGACCACGGACCAGTTGCCGGCCCGGGCCCGGTGTACCACCCGGTTGCGGGAGGCCGTGGTGG
CCGCGGTGCTGGACTCCGGCCGGGCCACCGCGGAAGCCGCCAACGCGCATGGCCTGGCGTGGGGCACCGTCAACGCCGCCATCCTGGGCCACACCATGGT
CTTGCCGGAGGTCGACAAGGTGCCGGTGCGGGCGCTGGGCATCGACGAGCACCGGTTCGCCACCGCCAAGTGGTTCAAACACCCCGACACGGCCGTCTGG
TGCCGGGTCGAGCCGTGGATGAGCACCTTTGTCGTCGCCGACACCGGGCACGTGCTCGGCGTCGTCGACGGACGGTCTTCCCGCAACGTCACCGCCTGGC
TGGCCGAACGCTCCGAAGCCTGGCTGGATCGGCTCGAGGTGGTCGCCATCGATCCCTCGGCCACGTTCCGCACCGCGATCCGCAAGGTGCTGCCGACCGT
GGACATCAGCGTGGACCACTTCCACCTGGTCAAGCTCGGCAACCAGATGCTCACCGAGGTCCGCCAACGCGTGGTGCGCGAAGTCCTGGGCCGGCGGGGC
CGCAAGCAGGATGCCGTGTGGGCTCACCGGATGTTGCTGCTGCGGGCCGGGGACCGACTCACCGAGGCCGGCCTGCGCCGACTCGAGCACGTCCTGGACG
ACGATGCCTATGAGCAGGTCGCCGCCGCCTGGGCGGTCAAGGAGCACCTGCGGCGGATCCTGAACGCCCCCACCGTCGCAGCGGCCCAGAACGCCCGGAT
CGACTTCGAGCTGACCGTAGCCGCCGCAGGACTGCCGGAGGCTGACAGGCTCTCGGCCACCGTGGGGAAGTGGTGGGTCGAGATCAAGGTGTTCATCCGC
ACCCGAGTCACGAACGCCCGCACCGAGGCGGCCAACACGGCCATCAAACAGGTCAAGCGCACCGGCCGCGGGTTCCGCAACCAGACCAACTACCAGTCAC
GTATTCTGGCCAGGAGCTTCCGACGGACACGCCGACGCTCCCAGATCCACCCTCGAGCAGGACTCCACGCTCAAGTGTGAAGAGCC
CGAGCCATGTCCCAGCGTACGCGCGCTGCCTTGCCCCTGCCTGCCCACGCCGCTGCCGAGCACCACGTCCGTGCGGCGGCATCGGTGGTGTTCAACCTGG
AGGGATACACCGTCCTTCAGGCCCTCGACCGGCCACTGGGAGGTAGGCGTGTCGTTGTGGCCGCCGATGCCGCCGAGGGGGCCTGCCCGGGCTGCGGGGT
GTTCTCGGGCCGGGTGCACCAGCGGGTCCGCCAGTCCGTGAAGGACATCCCTGTCGGTGGGGACCTGTTGGAGTTGGTTGTCGTCAAGCCCAGGTTCCTG
TGCGCCGAGGGGGCCTGCCCGCGCCGGACCTTCACGCAGACCACGGACCAGTTGCCGGCCCGGGCCCGGTGTACCACCCGGTTGCGGGAGGCCGTGGTGG
CCGCGGTGCTGGACTCCGGCCGGGCCACCGCGGAAGCCGCCAACGCGCATGGCCTGGCGTGGGGCACCGTCAACGCCGCCATCCTGGGCCACACCATGGT
CTTGCCGGAGGTCGACAAGGTGCCGGTGCGGGCGCTGGGCATCGACGAGCACCGGTTCGCCACCGCCAAGTGGTTCAAACACCCCGACACGGCCGTCTGG
TGCCGGGTCGAGCCGTGGATGAGCACCTTTGTCGTCGCCGACACCGGGCACGTGCTCGGCGTCGTCGACGGACGGTCTTCCCGCAACGTCACCGCCTGGC
TGGCCGAACGCTCCGAAGCCTGGCTGGATCGGCTCGAGGTGGTCGCCATCGATCCCTCGGCCACGTTCCGCACCGCGATCCGCAAGGTGCTGCCGACCGT
GGACATCAGCGTGGACCACTTCCACCTGGTCAAGCTCGGCAACCAGATGCTCACCGAGGTCCGCCAACGCGTGGTGCGCGAAGTCCTGGGCCGGCGGGGC
CGCAAGCAGGATGCCGTGTGGGCTCACCGGATGTTGCTGCTGCGGGCCGGGGACCGACTCACCGAGGCCGGCCTGCGCCGACTCGAGCACGTCCTGGACG
ACGATGCCTATGAGCAGGTCGCCGCCGCCTGGGCGGTCAAGGAGCACCTGCGGCGGATCCTGAACGCCCCCACCGTCGCAGCGGCCCAGAACGCCCGGAT
CGACTTCGAGCTGACCGTAGCCGCCGCAGGACTGCCGGAGGCTGACAGGCTCTCGGCCACCGTGGGGAAGTGGTGGGTCGAGATCAAGGTGTTCATCCGC
ACCCGAGTCACGAACGCCCGCACCGAGGCGGCCAACACGGCCATCAAACAGGTCAAGCGCACCGGCCGCGGGTTCCGCAACCAGACCAACTACCAGTCAC
GTATTCTGGCCAGGAGCTTCCGACGGACACGCCGACGCTCCCAGATCCACCCTCGAGCAGGACTCCACGCTCAAGTGTGAAGAGCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1374 bp | 457 aa | 107 | 1480 | + | No |
Chemistry : Unknow
ORF sequence :
MSQRTRAALPLPAHAAAEHHVRAAASVVFNLEGYTVLQALDRPLGGRRVVVAADAAEGACPGCGVFSGRVHQRVRQSVKDIPVGGDLLELVVVKPRFLCA
EGACPRRTFTQTTDQLPARARCTTRLREAVVAAVLDSGRATAEAANAHGLAWGTVNAAILGHTMVLPEVDKVPVRALGIDEHRFATAKWFKHPDTAVWCR
VEPWMSTFVVADTGHVLGVVDGRSSRNVTAWLAERSEAWLDRLEVVAIDPSATFRTAIRKVLPTVDISVDHFHLVKLGNQMLTEVRQRVVREVLGRRGRK
QDAVWAHRMLLLRAGDRLTEAGLRRLEHVLDDDAYEQVAAAWAVKEHLRRILNAPTVAAAQNARIDFELTVAAAGLPEADRLSATVGKWWVEIKVFIRTR
VTNARTEAANTAIKQVKRTGRGFRNQTNYQSRILARSFRRTRRRSQIHPRAGLHAQV
EGACPRRTFTQTTDQLPARARCTTRLREAVVAAVLDSGRATAEAANAHGLAWGTVNAAILGHTMVLPEVDKVPVRALGIDEHRFATAKWFKHPDTAVWCR
VEPWMSTFVVADTGHVLGVVDGRSSRNVTAWLAERSEAWLDRLEVVAIDPSATFRTAIRKVLPTVDISVDHFHLVKLGNQMLTEVRQRVVREVLGRRGRK
QDAVWAHRMLLLRAGDRLTEAGLRRLEHVLDDDAYEQVAAAWAVKEHLRRILNAPTVAAAQNARIDFELTVAAAGLPEADRLSATVGKWWVEIKVFIRTR
VTNARTEAANTAIKQVKRTGRGFRNQTNYQSRILARSFRRTRRRSQIHPRAGLHAQV
Blast result :
Comments
ISMlu13 is 59% aa similar to ISAar15.
References
1] ISfinder annotation (2018)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Lowry,S., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Young,M. and Greenblatt,C. (2009) Direct GenBank submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Lowry,S., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Young,M. and Greenblatt,C. (2009) Direct GenBank submission.