ISMlu12
- Family IS110
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP001628 | ND | Micrococcus luteus | Micrococcus luteus NCTC 2665 |
DNA section
IS Length : 1492 bp
Ends
Left end : TTACCTTCTTCGTGGCTCCTGGATCCGGCAGGATCAGGGAGTGCTGGCCGGCCGGTCCTGGGCATGATCGTTTGCCCCCAGTCATCCATGATCCGGGGGG
Right end : TACGCGATGCTCCGCGATGGCACCCTGTATCAAGATCCGACCGCCCCGCCAGCACCATCATCAGTCGCTCTCGCGGCTTGACGAAAACCATAGAGGCACC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CAGCGCCCTG | CCCCCG | ACTTGCCGGG | 6 |
DNA sequence
TTACCTTCTTCGTGGCTCCTGGATCCGGCAGGATCAGGGAGTGCTGGCCGGCCGGTCCTGGGCATGATCGTTTGCCCCCAGTCATCCATGATCCGGGGGG
TGTTGTCACCCAGGACCGGTCCGGTGGTCACGGATCGCTGATAGAGGCAGGACCCGGCTGACAAGGGCCTTCGTAACGTGGATGCCGAGCGTGATCACCT
CCCGGCCGGCCAGCACACGCCACCGGCGCACCAGAAGGGAACGATCATGACAGCACAGCAGCACCCGGCCGTGTTCATCGGCCTTGACGTCGGCAAGGCC
GAGCACCACGCCGTGGCCCTCACCGCGGCCGGGAAAAAGGTCTACGACAAGGCCCTGCCCAACGACGAGACCCGCCTACGCGGCATCCTCGACGAGCTCG
CCCGCGCCCACGGGCCCGCGCTGCTCGTCGTCGATCAACCGGCCACGATCGGCGCCCTGCCCGTGGCCGTGGCCCAGGCCTGCGACGGCGTTGAGGTGGC
GTACCTGCCCGGGCTGGCGATGCGACGGATCGCTGACCTGCACCCCGGCTCGGCCAAGACCGACGCCAAGGACGCGGCGATCATCGCTGAAGCAGCCCGC
ACGATGCCCCATACGCTGCGCTCCATCCGAGTCGATGAGGAACAGATCGCCGAGCTGGCCATGCTCGCCGGGTTCGATGACGACCTCGCCGCGCAGATCA
CCGCGACCTCGAACCGGCTGCGCGGACTCCTCACCCAGATCCACCCCGCGCTCGAGCGCGTGCTCGGGCCCAGGATCACCCACCCCGCCGTGGCAGACCT
TCTCGGCCGCTACCCCACCCCGGCACAGCTCAGAACGGCTGGGCCGGGGCATGTGCGGGCCAGGCTGCGCAAGCACGCCCCACGCCTGGCCGCTTCTCTC
ACGGAACAGATCTTCCAAGCCCTGGACGAGCAGTCCGTGGTCGTGGCCGGCACGCAGGCCGCGGCCACCGTGGTCCCGATCCTGGCAGAACAGCTCGCCG
GCCTGACCCGTCAGCGGGCCGGCCTGGCCTCCCAGGTGGAGGCTGCAGTGGAGGCCCACCCTCTTCACCCGGTCCTGATCTCGATGCCCGGAGTAGGGAT
CAGGACCGCCGCACGCATCCTCACTGAAGTTGTGGGCAAGGACTTCGTCGATGCCGGGCATCTGGCCTCCTACGCCGGGATCGCCCCGGTCACCCGACGC
TCCGGGACCTCGATCCGCGGAGAGCACGTAGCCCGGGGCGGGAACAAGCGACTGAAGCGGGCCCTGTTCCTCTCAGCGTTCGCTTCGCTGTCACACCCGC
CTTCCAGGGCGTACTACGACCGCAAACGAGCCCAGGGCAAACGCCACAACCAGGCGCTGATCGCGCTGGCCCGGCGCCGCACGGACGTGCTCTACGCGAT
GCTCCGCGATGGCACCCTGTATCAAGATCCGACCGCCCCGCCAGCACCATCATCAGTCGCTCTCGCGGCTTGACGAAAACCATAGAGGCACC
TGTTGTCACCCAGGACCGGTCCGGTGGTCACGGATCGCTGATAGAGGCAGGACCCGGCTGACAAGGGCCTTCGTAACGTGGATGCCGAGCGTGATCACCT
CCCGGCCGGCCAGCACACGCCACCGGCGCACCAGAAGGGAACGATCATGACAGCACAGCAGCACCCGGCCGTGTTCATCGGCCTTGACGTCGGCAAGGCC
GAGCACCACGCCGTGGCCCTCACCGCGGCCGGGAAAAAGGTCTACGACAAGGCCCTGCCCAACGACGAGACCCGCCTACGCGGCATCCTCGACGAGCTCG
CCCGCGCCCACGGGCCCGCGCTGCTCGTCGTCGATCAACCGGCCACGATCGGCGCCCTGCCCGTGGCCGTGGCCCAGGCCTGCGACGGCGTTGAGGTGGC
GTACCTGCCCGGGCTGGCGATGCGACGGATCGCTGACCTGCACCCCGGCTCGGCCAAGACCGACGCCAAGGACGCGGCGATCATCGCTGAAGCAGCCCGC
ACGATGCCCCATACGCTGCGCTCCATCCGAGTCGATGAGGAACAGATCGCCGAGCTGGCCATGCTCGCCGGGTTCGATGACGACCTCGCCGCGCAGATCA
CCGCGACCTCGAACCGGCTGCGCGGACTCCTCACCCAGATCCACCCCGCGCTCGAGCGCGTGCTCGGGCCCAGGATCACCCACCCCGCCGTGGCAGACCT
TCTCGGCCGCTACCCCACCCCGGCACAGCTCAGAACGGCTGGGCCGGGGCATGTGCGGGCCAGGCTGCGCAAGCACGCCCCACGCCTGGCCGCTTCTCTC
ACGGAACAGATCTTCCAAGCCCTGGACGAGCAGTCCGTGGTCGTGGCCGGCACGCAGGCCGCGGCCACCGTGGTCCCGATCCTGGCAGAACAGCTCGCCG
GCCTGACCCGTCAGCGGGCCGGCCTGGCCTCCCAGGTGGAGGCTGCAGTGGAGGCCCACCCTCTTCACCCGGTCCTGATCTCGATGCCCGGAGTAGGGAT
CAGGACCGCCGCACGCATCCTCACTGAAGTTGTGGGCAAGGACTTCGTCGATGCCGGGCATCTGGCCTCCTACGCCGGGATCGCCCCGGTCACCCGACGC
TCCGGGACCTCGATCCGCGGAGAGCACGTAGCCCGGGGCGGGAACAAGCGACTGAAGCGGGCCCTGTTCCTCTCAGCGTTCGCTTCGCTGTCACACCCGC
CTTCCAGGGCGTACTACGACCGCAAACGAGCCCAGGGCAAACGCCACAACCAGGCGCTGATCGCGCTGGCCCGGCGCCGCACGGACGTGCTCTACGCGAT
GCTCCGCGATGGCACCCTGTATCAAGATCCGACCGCCCCGCCAGCACCATCATCAGTCGCTCTCGCGGCTTGACGAAAACCATAGAGGCACC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1227 bp | 408 aa | 247 | 1473 | + | No |
Chemistry : DEDD
ORF sequence :
MTAQQHPAVFIGLDVGKAEHHAVALTAAGKKVYDKALPNDETRLRGILDELARAHGPALLVVDQPATIGALPVAVAQACDGVEVAYLPGLAMRRIADLHP
GSAKTDAKDAAIIAEAARTMPHTLRSIRVDEEQIAELAMLAGFDDDLAAQITATSNRLRGLLTQIHPALERVLGPRITHPAVADLLGRYPTPAQLRTAGP
GHVRARLRKHAPRLAASLTEQIFQALDEQSVVVAGTQAAATVVPILAEQLAGLTRQRAGLASQVEAAVEAHPLHPVLISMPGVGIRTAARILTEVVGKDF
VDAGHLASYAGIAPVTRRSGTSIRGEHVARGGNKRLKRALFLSAFASLSHPPSRAYYDRKRAQGKRHNQALIALARRRTDVLYAMLRDGTLYQDPTAPPA
PSSVALAA
GSAKTDAKDAAIIAEAARTMPHTLRSIRVDEEQIAELAMLAGFDDDLAAQITATSNRLRGLLTQIHPALERVLGPRITHPAVADLLGRYPTPAQLRTAGP
GHVRARLRKHAPRLAASLTEQIFQALDEQSVVVAGTQAAATVVPILAEQLAGLTRQRAGLASQVEAAVEAHPLHPVLISMPGVGIRTAARILTEVVGKDF
VDAGHLASYAGIAPVTRRSGTSIRGEHVARGGNKRLKRALFLSAFASLSHPPSRAYYDRKRAQGKRHNQALIALARRRTDVLYAMLRDGTLYQDPTAPPA
PSSVALAA
Blast result :
Comments
ISMlu12 is 81% aa similar to ISArsp5.
Empty site in Micrococcus luteus strain SGAir0127 (CP025616.1).
Empty site in Micrococcus luteus strain SGAir0127 (CP025616.1).
References
1] ISfinder annotation (2018)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Lowry,S., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Young,M. and Greenblatt,C. (2009) Direct GenBank submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Lowry,S., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Young,M. and Greenblatt,C. (2009) Direct GenBank submission.