ISMlu8
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001628 | ND | Micrococcus luteus | Micrococcus luteus NCTC 2665 |
DNA section
IS Length : 1117 bp
Ends
IR Length : 21/30
IRL : TGTTGTGGGGCATGAGGTTCTTGGCACGAGGGCCGGGCTGAGATGAGACG
IRR : TGTAGGAGGTCATGACGTTGTTGACTCGGGCCGGGGCCAGTGAGGCCGGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGCACCTCAG | CCTAGC | GACGCCCCGGA | 6 |
DNA sequence
TGTTGTGGGGCATGAGGTTCTTGGCACGAGGGCCGGGCTGAGATGAGACGAGTGGGCCTCTCCCGCAGGATGGAAGTTCCTACACCACCCACCTGCCCGA
AAAGAGACCCACTCATGACTCACGCTAATGCACCCCTGACTCCCACCGGCCGTCTCAGGATGGTCCACCGCCACCTGCACGACGGGATCCCACAGGCGCA
CGTGGCCGCCGAGTTCCGGGTGAGCCGGCCCACGGTGGCCACCTGGGTGGCCCGCTACCGTGCCGAAGGCGAGGCCGGCCTTCAGGACCTGCCCAGCCGG
CCGCACCGTTCACCTGCCCAGCTCGACCCCGAGGTGGTGGCCCAGATCCAGACCCTGCGTCGCAGGGAGAAGTGGTCGGCCCGCCGGATCCATCACCACC
TCGTCTCTGAAGGCCACCGGGTGTGCCTCCGAACGGTGGGCAGGTGGCTGCACCGGCTGGGCATCTCCCGGTTGCCAGACCTCGCGCCCACGGGTGAGGA
CCTGCGCCAACGACCGCAGAAGATCACCGCCCGCGGCCCGGGGCACATGGTGCACCTGGACGTGAAGAAGATCGGGCGCATCCCCGAGGGGGGCGGCTGG
CGTGCTCACGGACGGGACTCCGAGAACGCGCGAGCAGCCAAGCGCGGGCCTGGCCGGCGGGTCGGGTACACCTACCTGCACTCGGCGATCGACGGGTACA
CCCGCCTGGCGTACACCGAGGCGTTGGAGGATGAGAAAGCGGTGACCACGATCGGGTTCTTCTGCCGGGCGAGGGCGTTCTTCGCCGCCCACGGCATCAC
CGTGGACCGGGTGGTCACGGACAACGGGAACAACTATCGGGCCGCGGAGTTCACCGCCAAGGTGGTCTCGCTCGGGGGCCGGCACCACCGGATCCGCCCA
TACACGCCCCGCCATAACGGGAAGGTCGAACGCTACAACCGGCTGATGGTCGATGAGGTCCTCTACGCCCGCCCGTATACCTCAGAGACAGCTCGGCGTG
AGGCGTTGGCAGTGTGGGTGAACCACTACAACTACCATCGGCCTCATACCTCCTGCGGAGACGCTCCTCCGGCCTCACTGGCCCCGGCCCGAGTCAACAA
CGTCATGACCTCCTACA
AAAGAGACCCACTCATGACTCACGCTAATGCACCCCTGACTCCCACCGGCCGTCTCAGGATGGTCCACCGCCACCTGCACGACGGGATCCCACAGGCGCA
CGTGGCCGCCGAGTTCCGGGTGAGCCGGCCCACGGTGGCCACCTGGGTGGCCCGCTACCGTGCCGAAGGCGAGGCCGGCCTTCAGGACCTGCCCAGCCGG
CCGCACCGTTCACCTGCCCAGCTCGACCCCGAGGTGGTGGCCCAGATCCAGACCCTGCGTCGCAGGGAGAAGTGGTCGGCCCGCCGGATCCATCACCACC
TCGTCTCTGAAGGCCACCGGGTGTGCCTCCGAACGGTGGGCAGGTGGCTGCACCGGCTGGGCATCTCCCGGTTGCCAGACCTCGCGCCCACGGGTGAGGA
CCTGCGCCAACGACCGCAGAAGATCACCGCCCGCGGCCCGGGGCACATGGTGCACCTGGACGTGAAGAAGATCGGGCGCATCCCCGAGGGGGGCGGCTGG
CGTGCTCACGGACGGGACTCCGAGAACGCGCGAGCAGCCAAGCGCGGGCCTGGCCGGCGGGTCGGGTACACCTACCTGCACTCGGCGATCGACGGGTACA
CCCGCCTGGCGTACACCGAGGCGTTGGAGGATGAGAAAGCGGTGACCACGATCGGGTTCTTCTGCCGGGCGAGGGCGTTCTTCGCCGCCCACGGCATCAC
CGTGGACCGGGTGGTCACGGACAACGGGAACAACTATCGGGCCGCGGAGTTCACCGCCAAGGTGGTCTCGCTCGGGGGCCGGCACCACCGGATCCGCCCA
TACACGCCCCGCCATAACGGGAAGGTCGAACGCTACAACCGGCTGATGGTCGATGAGGTCCTCTACGCCCGCCCGTATACCTCAGAGACAGCTCGGCGTG
AGGCGTTGGCAGTGTGGGTGAACCACTACAACTACCATCGGCCTCATACCTCCTGCGGAGACGCTCCTCCGGCCTCACTGGCCCCGGCCCGAGTCAACAA
CGTCATGACCTCCTACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1003 bp | 335 aa | 115 | 1117 | + | No |
Chemistry : DDE
ORF sequence :
MTHANAPLTPTGRLRMVHRHLHDGIPQAHVAAEFRVSRPTVATWVARYRAEGEAGLQDLPSRPHRSPAQLDPEVVAQIQTLRRREKWSARRIHHHLVSEG
HRVCLRTVGRWLHRLGISRLPDLAPTGEDLRQRPQKITARGPGHMVHLDVKKIGRIPEGGGWRAHGRDSENARAAKRGPGRRVGYTYLHSAIDGYTRLAY
TEALEDEKAVTTIGFFCRARAFFAAHGITVDRVVTDNGNNYRAAEFTAKVVSLGGRHHRIRPYTPRHNGKVERYNRLMVDEVLYARPYTSETARREALAV
WVNHYNYHRPHTSCGDAPPASLAPARVNNVMTSYT
HRVCLRTVGRWLHRLGISRLPDLAPTGEDLRQRPQKITARGPGHMVHLDVKKIGRIPEGGGWRAHGRDSENARAAKRGPGRRVGYTYLHSAIDGYTRLAY
TEALEDEKAVTTIGFFCRARAFFAAHGITVDRVVTDNGNNYRAAEFTAKVVSLGGRHHRIRPYTPRHNGKVERYNRLMVDEVLYARPYTSETARREALAV
WVNHYNYHRPHTSCGDAPPASLAPARVNNVMTSYT
Blast result :
Comments
ISMlu8 is 85% aa similar to ISKrh2.
The STOP codon is done by the insertion site.
The STOP codon is done by the insertion site.
References
1] ISfinder annotation (2018)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Lowry,S., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Young,M. and Greenblatt,C. (2009) Direct GenBank submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Lowry,S., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Young,M. and Greenblatt,C. (2009) Direct GenBank submission.