ISMlu5

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001628 ND Micrococcus luteus
Micrococcus luteus NCTC 2665
DNA section
IS Length : 1426 bp

Ends


IR Length : 24

IRL : GGCTCTTCACGAACGAGGGTGTAGTCGGTTGAGCGCGTCGGTGGCCGGGT
IRR : GGCTCTTCACGAACGAGGGTGTAGCGCGGGTCTGAACCCTCCGGCTTCGA

Insertion site


Left flankDirect repeatRight flankDR Length
GCTCGGGACCGGCAATCGGGTCGCGACG8

DNA sequence

GGCTCTTCACGAACGAGGGTGTAGTCGGTTGAGCGCGTCGGTGGCCGGGTAGGGGTCGAGGTCTCCCGGATGATGGAAGTTCTTCACGCTCGCCATCCCG
AAAGACCTCGACGTGCTCCACCCTACTTTCGCGACCCCTGACCTGACCACGTTCTGCCGCCTTGACGAGCTCGGCCTCGTCGCCGTCGGCCAGCTGATCG
AGCCGGATCGGGCCACGATCGAATGCCGCGTCGTCGAGGACGACCCGTGGTGTCGGAAGTGCGGTGTCGAGGGCGTGCCGCGGGACACGGTCACGCGTCG
ACTGGCGCACGAGCCGTTCGGGCACCGGCCGACGACCCTGCTGGTGCGGGTGCGCCGGTACCGGTGCGGACACTGCCGGCGCACGTGGCGGCAGGACATG
ACGCGGGCAGCGGCGCCGCGTGCGAAGATCTCCCGCGGCGGCCTGGAGTGGGCGCTGCGGGGCATCGTCATCGACCACCTCACCGTCACCCGCGTCGCCG
CAGGTCTCGGGGTGTCCTGGAGTGCCGCGAACGCCGCCGTCCTCGCGGAAGGCAAGCGGCGCCTGATCGACGACCCCGCCCGGTTCGACGGGGTCACCAC
GATCGGTGTCGACGAGCACGTCTGGCGACACACGAGGCTGGGCGACAAGTACGTCACCGTGATCATCGACCTCACCCCCGCGAGGAACAAGACCGGGCCG
GCGAGGCTGCTGGACATGGTCGAGGGCCGCTCCAAGGCGGTGTTCAAGCAGTGGCTCGCCGCCCGCCCTGCGGACTGGGCGAAGCGGATCGAGGTGGTCG
CGATGGACGGCTTCGCCGGGTTCAAGACCGCTGCCGCCGAGGAACTCCCCGACGCCGTCCCCGTCATGGACCCGTTCCACGTGGTCCGCCTCGCCGGCGA
CGCGCTGGATGTCTGCCGGCGTCGGGTCCAGCAAGACACCACCGGTCACCGCGGGCTCAAGGGCGACCCGCTCTACAAAGCCCGCCGCACCCTGCACACC
GGGGCGAGCCTGCTCACCGACCGGCAGCGGGCACGCCTGGACGCAGTGTTCGCGAGCGAGGAGCACATCGAGGTCGAGGCGACCTGGGGCATCTACCAGC
GCATCGTCGCGGCCTACCGGGAGCCCGACAAGAAGAAAGCGAAGGCGATGATGCAGGAGGTGATCGCTACGATCAGCAGCGGCGTTCCCGCGGCGCTCGT
CGAGGTCCGCAAGCTCGGCCGGACCATGAAGCAGCGGGCGGGCGACATCCTCGCGTTCTTCGACCGCCCCGGCACCAGCAACGGCCCGACCGAGGCCATC
AACGGGCGGCTCGAACACCTCCGCGGCTCCGCCCTCGGCTTCCGCAACCTCACCCACTACATCGCTCGGTCACTGCTCGAAGCCGGAGGGTTCAGACCCG
CGCTACACCCTCGTTCGTGAAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1308 bp435 aa1131420+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MLHPTFATPDLTTFCRLDELGLVAVGQLIEPDRATIECRVVEDDPWCRKCGVEGVPRDTVTRRLAHEPFGHRPTTLLVRVRRYRCGHCRRTWRQDMTRAA
APRAKISRGGLEWALRGIVIDHLTVTRVAAGLGVSWSAANAAVLAEGKRRLIDDPARFDGVTTIGVDEHVWRHTRLGDKYVTVIIDLTPARNKTGPARLL
DMVEGRSKAVFKQWLAARPADWAKRIEVVAMDGFAGFKTAAAEELPDAVPVMDPFHVVRLAGDALDVCRRRVQQDTTGHRGLKGDPLYKARRTLHTGASL
LTDRQRARLDAVFASEEHIEVEATWGIYQRIVAAYREPDKKKAKAMMQEVIATISSGVPAALVEVRKLGRTMKQRAGDILAFFDRPGTSNGPTEAINGRL
EHLRGSALGFRNLTHYIARSLLEAGGFRPALHPRS

 

Blast result :
Comments
ISMlu5 is 92% aa similar to ISAar42.
References
1] ISfinder annotation (2018)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Lowry,S., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Young,M. and Greenblatt,C. (2009) Direct GenBank submission.