ISMtsp22
- Family IS1595
- Group ISNha5
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| LMRM01000009 | ND | Methylobacterium sp. | Methylobacterium sp. Leaf94 |
DNA section
IS Length : 5979 bp
Ends
IR Length : 36
IRL : CGGTATTATGCAGCAACCTCACCCAAAAGCGTTGAGGTCGTTGGATAGCT
IRR : CGGTATTATGCAGCAACCTCACCCAAAAGCGTTGAGAGCAATTTTATTGA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CCCTGTCGCGCTT | CGACTACC | CGGCGGCCAA | 8 |
DNA sequence
CGGTATTATGCAGCAACCTCACCCAAAAGCGTTGAGGTCGTTGGATAGCTAAGGCGCGTGGTGGCGACGGGCCTGGGTGTTGATTTTTTTCCGAGAAATG
CTAGTTCTGTTGAAAGACGCGTTTTTCAACGGTGGTGAGATGGCCGAGGCCGAGAACCCTGCTCAATCATTGATTGATGAAGAATTTCCGATAGGGCTCC
GGCCACTCGTTGCGCCTGCGCTGAAGCGCGCTTATCAAGCCGCCGACTCGCTGATCCTTCGTACCGAGTTTCTGGACAATCCGAGCGGGCGCTACCAGCG
GGGCGACCTGATCTGCAAGGCGGCTGAGCACGAGTTTCGGCGGCTTATAGAGGCTGGAAGCCTGCCCTTTGAGCCGTCGTGGGATGACTACGCCTCACCG
ACGGGCAAGCATCTCGTGATGCGAGGGAAGCGCTCTCGCATCACCATCAATCAGGTCGATAAGCCGAACACCAAGCCCCGGCGAGCTGCCTTTCGGGTCA
ATTTCGGCGAGTCGAACATGGCCGATCTGTTTCCGGAGCAAAATCGAGCGATCCGAGAAGAAAACGAAAAGAAACATATCGTACTTTTACATGGACATCG
AAATCTGACGTTCGCCACGCTGGGCCTTCCTCATCCCACTCGGGCTAAGTTGATATGGCGAACACCGAACCTTCTGCCCAAGGTTTTTGAGGTGGCTGAC
ATACCTCCAGGCACCACTTCACCGGTGCCGCCTGAGGAGGGGCCGACTCAATCACCTGATCCCGAAGCCCTGGAAAACCTCCTGAGATTGATCCGCGATA
ACAGTTAATGCGCAACGTCGTCCGCTTCCCCGACCGAACTAACGGTTTCGTTCCGCAGCGCCTCACCGAAGCTCGGGTTGCGCTACAGGTCGCGCGCGCC
GACTTGGCGCGACAGTTGGGTATAACTGGACAGGCGGTCGCCTATTATGAGGCGGGCGACCGGCGTCCCGACATGGACGTCTTGCTCAAGATCTCTAGCA
TCTTGAACCAACCTGTTTCGTTCTTTCTGAAGCCTACAAAGCCTATCGAAGGCGTGCGTGGTGCTCGTTACTTTAGAAGTGTTGGACCAAAGACCAACAA
AATAAACCATGCTTTAGAAGCTAAGACAAAGTGGCTTTGGGAGTTTCTGCAATTTCTCTTGAGACACATCAAGCTTCCGACTCCGAACATTCCTCTGATA
GAGGATGAGCTTCAAAGCGACATGTATGATTTAGACGCTATTGAGGCTATTGCTACTAGCGTTCGTCGCCATTGGAAGTTGGGTGATGGCCCGATAGCAA
ATATGATTGCCCTACTGGAAACTAACGGCGTTATTGTCTCGCGTTTTTCCATGGGCTCAGACAAAATTGATGCTTTCTCATGCTGGATCGAAGGCCGACC
ATATATTCTGCTTGGGTCGGATAAGTCGTCTTGCGCTCGGTCTCGTTTCGACGCAGCCCATGAGCTTGGCCATCTTGTGTTGCACAAGCACATATCTCAA
GATGACATCGAAGACAAAACAATCCGAGATCGCATAGAAAAAGAGGCCAATTGGTTCGCGGGGTCCTTTCTATTGCCTCGCGGGTCCATTTTGGCGGAAT
TCTATTCTACAAGATCGTCTCATCTAATTGGTCTGAAGAAGCGCTGGCGGGTGTCTATGCAGGCGATTGCTCATCGCTGCAAGGATATCGGCGCGCTAGA
CGAAGGGCAGTATATCGCTTTTCGTAAAGTCTTGGCTGTGAAGGGCTGGCTTAAGACCGAGCCTTTAGACGGCGAGCTGCCGCTAGAGATGCCAGGGCTT
CTTATCAAGGCTTGGGCTATGCTTGTGTCTAAGGGACTGATCCACGAAGAGGGCGCAGAGGAGTCTATAGGCTTCTCGCTAGATATGGTGCAGAGCCTCT
GCGGCTACATTCCAGATCGTAATCTTGAGCAGTCTATTCCGCAGATCTCGCTGCTGAATAATAAGGGCTAGACTGTCAATATTTTGAGCAAAGGTACATG
AAGAAGTTGCGGGCTTGCTCTCTGGCGTAGGTTCGAGCCGGGAGAGAAAGCAGTCGGGCCGACAATCCCCCTAGGAAGGGAATGCCGGCCCGGCCAGGAC
CACACAGCGCTAAGTCGATCCGACTTGGAAGAACCCCGCGATGCAAGGCGTCACAGCTTTAGAGTCGCATCTTCGGGGCTATCTTTCAAGCCGGACGGCA
TCCCTCAAACCGATTTCGGTAAAGGATACGTCATGCCCGCAGAGTTCCCCTGTGACCACGTCACGGCTTGCCACATCTTGCACGCCGTCCTTGTGAACCG
TTGGAGCCAGCAGAAGGCTTCTCACTACTTCTGTGTGAACGGCGGCACGGTCTCTAAGATCGTGCGCGGCCTCTCGCACTTCGGAGCCTCCCCGCTCCCG
TTCTAAGCAGTCGCGCCGGGGTTACCCTCCACGGTGATCCCGGCCGGTTCGTCCGAGAACGTCACGCCAGCCTCTTCAAACGCTCGCCGCATCGCCAGCA
GGTTGTTGGCGATCGGCTTTCGCAAGCCATTCTCAAACTGACGGATCGTGCTCAGACCGATGTTGGCGCGGGCAGACAGGTCTTGCTGCGACCAGTTCAA
CCACGCTCGGGCGGCACGGCATTGCTCAGGGCTCATTGCCATTGAGAGCTAAGGCAGGCGTCTTTTTGCGTCAAGGGCAATTCAAAGCGTTGACATAGCT
CTTTTCAACCCATAGAACTCACCTCAACGCAAAACGTTGAGGTTGACCCGTGGCCCAGCACTTTCTTCTCTCAAAAGCGGCCCGCACCCTCAACCTCTCC
AAGGTCGCCCGCATGTCGGACGATGAGGCGTGGTCCACCTTTAAGGCGATCCGCTGGGAGGCTACCGAGGGCGCCCCGTTCTGCCCCCGCTGTGGCTGCC
TCAAGCACTCGTTCATCGCCACCCGTAAGCTCTTCAAGTGCGCCGGCTGCCGTCACCAGTACAGCGTCACCAGCGGCACCATCTTCGCTTCGCGCAAGCT
CCCGATCCGAGACCACCTTCTCGCCATCGCGATCTTCGCCAACGGCGCAAAGGGCCACTCTGCCCTCCAACTCTCCCGCGACCTCGACTGCCAGTACCGC
ACGGCCTTCGTGATGGCTCACAAGCTCCGCGAGGCTGTCGCCGCCGAGTCGGCTGATACGACCCTTGAGGGCAACGTTGAGGTGGATGGCGCCTACTTCG
GTGGCCACGTTCGTCCCGAGAACATGAAGGCGGATCGGCGCGACCGTCGCCTTGCCGAGAACCAGACCGGCAAGCGCCGCGTCGTCGTCGTGATCCGTGA
GACCAAGGGCAAGGCTCTCACCTTCGCCTTCCGTTCTGAGGCCGAGTCCGTGCCGACCATCGTTGAGCGCGTCGCCCCCGGCAGCGTTGTTCACGCCGAT
GAGGCTAAGGGCTGGGATCGTCTCCACGCCTCGTTCAAGACTCACCGCATCAATCACCAGCAGGCGTACAGCGCTGACGGCGCCTGCACCAACCAAGCCG
AGTCGTTCTTCTCCCGCCTTCGCCGCGCCGAGATGGGCGTGCATCACCACGTCGCCGGCCCCTACCTCGCCGCCTACGCTGGCGAGATGGCTTGGCGTGA
GAACCATCGCCGCGTCAGCAACGGTGAGCAGTATGCCCTCATCACGGGCGCCGCGCTCACGCACGCCCCGTCGAAAGTCTGGAAGGGCTACTGGCAGCGT
CACACGGCGAAGGTGGCCTGAGATGGCCCTGCCTCAGATCGTCAACACCCTCACTGCCAAGCGGGATGAGATCGAAGCGCATATCATGGTGCTGCGTGAC
CAGCTTCGGGCGGCAGAGAGCGATCTGTCGGCGGTGACGGCTGTTCTCTCACTCTACGAGCTATCGCCCACCACTCAGACGCGCTTCCCAGCCTACGCGC
ACCTTAACAGGTTGTTCGCCTATGGAGAGATGTTTGGACTGTGTAAGCGAGCCATTGCGGAAGCTGGTAGACCGCTGACGACACGTGAGATTGCTCTGGC
CGTCATACGCGCGAAGGGGTGGGACGATAAGGACGCAATGCTACGCAAGGCGGTTGCATATAGGCTAATTCAAAGCCTCAGCCAAGCCGCTGTTCAAGGG
CGGATTAGGGATGCTGGAAAACGAGCTAACGTGCGAGTGTGGAAATTAGCGGATACAGATGAAATCTAAGTAGATTTTTTTTGAACATTTTCCTGTAGCT
GCTTTACAAGATCAGAGCGAAGATCAAGCACCTTCCCAAGGTTTTCCGCCCACTGTCCGATATCTTTTGCGTCAACAAATGTCTGCACATCCTTATTAAA
TTTTACCACTTCATTTTGATAACTTGAAATCAGAGCATTTTCTTCTTTCCCAAATAGACGCTTGATACTCTCTGCATCTTGGATCTGAGACAGCAGTACA
GTCTTAAATTTTTCTTTGGCCTTTGTGAGGTCTTGCGACTTATTTACGGCGATTATGAATGTGTTCAGAGCATCTACGATTTCTGAACTGTTGGCATCAA
ACTTCTGAACCTTGTCAATCTTGATCTGATTGACCTGGGTAACGGATTGGTACTCGTAGGAAAGACGTGCGCTATAGACGCTTACGCCAGCAGAAATTAG
GCTCGTAATTACAGCGGCCGTAAGAGCATGACTCAAGAACCCACTTGATTTAGGCGCTTGGACCTCAGTGGGTCTCTCGGAGACTGATGGCTCAGTCGGC
ATCGTCAAACTCTAATTCCCATTTCGTGGGCGCGCACTGGGCAATATTCCACGCCCGCCCGTTGACCGAGCAGCATCGCATATTGCCATGGTTTTGTCCA
TCGGAACCATGTCGTAAATTCTTTTCACCGCTTCTGAAACTCGTGAAGTGCAACGAGGGTCTGCGTTTGGCGATGAATTCATAATCACCATCTTCTTGAT
TTCTTGCTGCATCTGCTCAGCGCCATGGACTTGAGATAATTGGATATAAGAGCTTGCTAGGGCAACGATTACAAAGGAAACAATACTTTGGCTTATGTAT
CTCGTAAACCCTTCTGAGTGAATATCCGACTCTTGTAGGCAGGTATATTGTAGCGGAGGCTCGCGTAATAGTATGTCTACAATATCGTTTGGGTTAAGAC
CGGCCTCGCCCAAATCTAAAGAAATGCATGCCGCTGCCGCTAGGCGTGATAAATTGCTGAGGAATGCGGCGTCAGAGTCTCTGAAGCTATCTTGATTATA
AACCGTTGATACGTAGTTATCACCCGAAACAAATGAGCCGAACGCTAGGGCGCAAACCTCAAGCTTCAGAGATTTCTCCAGTAGCGTAAATGCGTGCTGA
TTTCTCAGGCTCTCCGATAACTTTGTAGAGATCGTATTTTCTCGAAAAGACCCTATCCACTCTACTGATCTGGCTGGAATAAAAGTATTCCCATACTTCT
CAGGTGCGAAACCCTTGACCCTGCGCCGGTTGCCGATCTGGCCAATCAGTATCTTCCCCATTCTGACGGGGCTTGGCAAAACAACAATATCATAATGTTT
AGCTGTATTAAAAAAGTTTATTATTGACATTCTAGCACGCCCGCGACCTTGCGCAGTCGCGTCGGCAAAATCCTCTAAATTAATTTCGTATTCTTCGTCG
GGGCCATACTCGGATATAAAGTTCTTTATACCTTGAGAATGAGCAATTCTTGGTCCCCAGTCATCTACATCTGAAAGATCGCCGTCGGGCAGAACCAATC
CTGGGGTATCAAGGAACGCTATGCCTTGTTCTTCAAAATTATCTAGAAACTGATACCCTTCTCCAGGGAACAATCTCCATACTTTTTGAGTGTCTGGGAT
CGTTGGTGCGTTCAAGTCGATTTGGATCATTTTATCGCCAATCTTTCCTTGCTTTGTATCAAGCGTAGGAAAGAACTGAGTCAAGGCGTGTTCAAACCAT
GATACGCGCATAGCACCAGTAAGGCTGGATCAATAAAATTGCTCTCAACGCTTTTGGGTGAGGTTGCTGCATAATACCG
CTAGTTCTGTTGAAAGACGCGTTTTTCAACGGTGGTGAGATGGCCGAGGCCGAGAACCCTGCTCAATCATTGATTGATGAAGAATTTCCGATAGGGCTCC
GGCCACTCGTTGCGCCTGCGCTGAAGCGCGCTTATCAAGCCGCCGACTCGCTGATCCTTCGTACCGAGTTTCTGGACAATCCGAGCGGGCGCTACCAGCG
GGGCGACCTGATCTGCAAGGCGGCTGAGCACGAGTTTCGGCGGCTTATAGAGGCTGGAAGCCTGCCCTTTGAGCCGTCGTGGGATGACTACGCCTCACCG
ACGGGCAAGCATCTCGTGATGCGAGGGAAGCGCTCTCGCATCACCATCAATCAGGTCGATAAGCCGAACACCAAGCCCCGGCGAGCTGCCTTTCGGGTCA
ATTTCGGCGAGTCGAACATGGCCGATCTGTTTCCGGAGCAAAATCGAGCGATCCGAGAAGAAAACGAAAAGAAACATATCGTACTTTTACATGGACATCG
AAATCTGACGTTCGCCACGCTGGGCCTTCCTCATCCCACTCGGGCTAAGTTGATATGGCGAACACCGAACCTTCTGCCCAAGGTTTTTGAGGTGGCTGAC
ATACCTCCAGGCACCACTTCACCGGTGCCGCCTGAGGAGGGGCCGACTCAATCACCTGATCCCGAAGCCCTGGAAAACCTCCTGAGATTGATCCGCGATA
ACAGTTAATGCGCAACGTCGTCCGCTTCCCCGACCGAACTAACGGTTTCGTTCCGCAGCGCCTCACCGAAGCTCGGGTTGCGCTACAGGTCGCGCGCGCC
GACTTGGCGCGACAGTTGGGTATAACTGGACAGGCGGTCGCCTATTATGAGGCGGGCGACCGGCGTCCCGACATGGACGTCTTGCTCAAGATCTCTAGCA
TCTTGAACCAACCTGTTTCGTTCTTTCTGAAGCCTACAAAGCCTATCGAAGGCGTGCGTGGTGCTCGTTACTTTAGAAGTGTTGGACCAAAGACCAACAA
AATAAACCATGCTTTAGAAGCTAAGACAAAGTGGCTTTGGGAGTTTCTGCAATTTCTCTTGAGACACATCAAGCTTCCGACTCCGAACATTCCTCTGATA
GAGGATGAGCTTCAAAGCGACATGTATGATTTAGACGCTATTGAGGCTATTGCTACTAGCGTTCGTCGCCATTGGAAGTTGGGTGATGGCCCGATAGCAA
ATATGATTGCCCTACTGGAAACTAACGGCGTTATTGTCTCGCGTTTTTCCATGGGCTCAGACAAAATTGATGCTTTCTCATGCTGGATCGAAGGCCGACC
ATATATTCTGCTTGGGTCGGATAAGTCGTCTTGCGCTCGGTCTCGTTTCGACGCAGCCCATGAGCTTGGCCATCTTGTGTTGCACAAGCACATATCTCAA
GATGACATCGAAGACAAAACAATCCGAGATCGCATAGAAAAAGAGGCCAATTGGTTCGCGGGGTCCTTTCTATTGCCTCGCGGGTCCATTTTGGCGGAAT
TCTATTCTACAAGATCGTCTCATCTAATTGGTCTGAAGAAGCGCTGGCGGGTGTCTATGCAGGCGATTGCTCATCGCTGCAAGGATATCGGCGCGCTAGA
CGAAGGGCAGTATATCGCTTTTCGTAAAGTCTTGGCTGTGAAGGGCTGGCTTAAGACCGAGCCTTTAGACGGCGAGCTGCCGCTAGAGATGCCAGGGCTT
CTTATCAAGGCTTGGGCTATGCTTGTGTCTAAGGGACTGATCCACGAAGAGGGCGCAGAGGAGTCTATAGGCTTCTCGCTAGATATGGTGCAGAGCCTCT
GCGGCTACATTCCAGATCGTAATCTTGAGCAGTCTATTCCGCAGATCTCGCTGCTGAATAATAAGGGCTAGACTGTCAATATTTTGAGCAAAGGTACATG
AAGAAGTTGCGGGCTTGCTCTCTGGCGTAGGTTCGAGCCGGGAGAGAAAGCAGTCGGGCCGACAATCCCCCTAGGAAGGGAATGCCGGCCCGGCCAGGAC
CACACAGCGCTAAGTCGATCCGACTTGGAAGAACCCCGCGATGCAAGGCGTCACAGCTTTAGAGTCGCATCTTCGGGGCTATCTTTCAAGCCGGACGGCA
TCCCTCAAACCGATTTCGGTAAAGGATACGTCATGCCCGCAGAGTTCCCCTGTGACCACGTCACGGCTTGCCACATCTTGCACGCCGTCCTTGTGAACCG
TTGGAGCCAGCAGAAGGCTTCTCACTACTTCTGTGTGAACGGCGGCACGGTCTCTAAGATCGTGCGCGGCCTCTCGCACTTCGGAGCCTCCCCGCTCCCG
TTCTAAGCAGTCGCGCCGGGGTTACCCTCCACGGTGATCCCGGCCGGTTCGTCCGAGAACGTCACGCCAGCCTCTTCAAACGCTCGCCGCATCGCCAGCA
GGTTGTTGGCGATCGGCTTTCGCAAGCCATTCTCAAACTGACGGATCGTGCTCAGACCGATGTTGGCGCGGGCAGACAGGTCTTGCTGCGACCAGTTCAA
CCACGCTCGGGCGGCACGGCATTGCTCAGGGCTCATTGCCATTGAGAGCTAAGGCAGGCGTCTTTTTGCGTCAAGGGCAATTCAAAGCGTTGACATAGCT
CTTTTCAACCCATAGAACTCACCTCAACGCAAAACGTTGAGGTTGACCCGTGGCCCAGCACTTTCTTCTCTCAAAAGCGGCCCGCACCCTCAACCTCTCC
AAGGTCGCCCGCATGTCGGACGATGAGGCGTGGTCCACCTTTAAGGCGATCCGCTGGGAGGCTACCGAGGGCGCCCCGTTCTGCCCCCGCTGTGGCTGCC
TCAAGCACTCGTTCATCGCCACCCGTAAGCTCTTCAAGTGCGCCGGCTGCCGTCACCAGTACAGCGTCACCAGCGGCACCATCTTCGCTTCGCGCAAGCT
CCCGATCCGAGACCACCTTCTCGCCATCGCGATCTTCGCCAACGGCGCAAAGGGCCACTCTGCCCTCCAACTCTCCCGCGACCTCGACTGCCAGTACCGC
ACGGCCTTCGTGATGGCTCACAAGCTCCGCGAGGCTGTCGCCGCCGAGTCGGCTGATACGACCCTTGAGGGCAACGTTGAGGTGGATGGCGCCTACTTCG
GTGGCCACGTTCGTCCCGAGAACATGAAGGCGGATCGGCGCGACCGTCGCCTTGCCGAGAACCAGACCGGCAAGCGCCGCGTCGTCGTCGTGATCCGTGA
GACCAAGGGCAAGGCTCTCACCTTCGCCTTCCGTTCTGAGGCCGAGTCCGTGCCGACCATCGTTGAGCGCGTCGCCCCCGGCAGCGTTGTTCACGCCGAT
GAGGCTAAGGGCTGGGATCGTCTCCACGCCTCGTTCAAGACTCACCGCATCAATCACCAGCAGGCGTACAGCGCTGACGGCGCCTGCACCAACCAAGCCG
AGTCGTTCTTCTCCCGCCTTCGCCGCGCCGAGATGGGCGTGCATCACCACGTCGCCGGCCCCTACCTCGCCGCCTACGCTGGCGAGATGGCTTGGCGTGA
GAACCATCGCCGCGTCAGCAACGGTGAGCAGTATGCCCTCATCACGGGCGCCGCGCTCACGCACGCCCCGTCGAAAGTCTGGAAGGGCTACTGGCAGCGT
CACACGGCGAAGGTGGCCTGAGATGGCCCTGCCTCAGATCGTCAACACCCTCACTGCCAAGCGGGATGAGATCGAAGCGCATATCATGGTGCTGCGTGAC
CAGCTTCGGGCGGCAGAGAGCGATCTGTCGGCGGTGACGGCTGTTCTCTCACTCTACGAGCTATCGCCCACCACTCAGACGCGCTTCCCAGCCTACGCGC
ACCTTAACAGGTTGTTCGCCTATGGAGAGATGTTTGGACTGTGTAAGCGAGCCATTGCGGAAGCTGGTAGACCGCTGACGACACGTGAGATTGCTCTGGC
CGTCATACGCGCGAAGGGGTGGGACGATAAGGACGCAATGCTACGCAAGGCGGTTGCATATAGGCTAATTCAAAGCCTCAGCCAAGCCGCTGTTCAAGGG
CGGATTAGGGATGCTGGAAAACGAGCTAACGTGCGAGTGTGGAAATTAGCGGATACAGATGAAATCTAAGTAGATTTTTTTTGAACATTTTCCTGTAGCT
GCTTTACAAGATCAGAGCGAAGATCAAGCACCTTCCCAAGGTTTTCCGCCCACTGTCCGATATCTTTTGCGTCAACAAATGTCTGCACATCCTTATTAAA
TTTTACCACTTCATTTTGATAACTTGAAATCAGAGCATTTTCTTCTTTCCCAAATAGACGCTTGATACTCTCTGCATCTTGGATCTGAGACAGCAGTACA
GTCTTAAATTTTTCTTTGGCCTTTGTGAGGTCTTGCGACTTATTTACGGCGATTATGAATGTGTTCAGAGCATCTACGATTTCTGAACTGTTGGCATCAA
ACTTCTGAACCTTGTCAATCTTGATCTGATTGACCTGGGTAACGGATTGGTACTCGTAGGAAAGACGTGCGCTATAGACGCTTACGCCAGCAGAAATTAG
GCTCGTAATTACAGCGGCCGTAAGAGCATGACTCAAGAACCCACTTGATTTAGGCGCTTGGACCTCAGTGGGTCTCTCGGAGACTGATGGCTCAGTCGGC
ATCGTCAAACTCTAATTCCCATTTCGTGGGCGCGCACTGGGCAATATTCCACGCCCGCCCGTTGACCGAGCAGCATCGCATATTGCCATGGTTTTGTCCA
TCGGAACCATGTCGTAAATTCTTTTCACCGCTTCTGAAACTCGTGAAGTGCAACGAGGGTCTGCGTTTGGCGATGAATTCATAATCACCATCTTCTTGAT
TTCTTGCTGCATCTGCTCAGCGCCATGGACTTGAGATAATTGGATATAAGAGCTTGCTAGGGCAACGATTACAAAGGAAACAATACTTTGGCTTATGTAT
CTCGTAAACCCTTCTGAGTGAATATCCGACTCTTGTAGGCAGGTATATTGTAGCGGAGGCTCGCGTAATAGTATGTCTACAATATCGTTTGGGTTAAGAC
CGGCCTCGCCCAAATCTAAAGAAATGCATGCCGCTGCCGCTAGGCGTGATAAATTGCTGAGGAATGCGGCGTCAGAGTCTCTGAAGCTATCTTGATTATA
AACCGTTGATACGTAGTTATCACCCGAAACAAATGAGCCGAACGCTAGGGCGCAAACCTCAAGCTTCAGAGATTTCTCCAGTAGCGTAAATGCGTGCTGA
TTTCTCAGGCTCTCCGATAACTTTGTAGAGATCGTATTTTCTCGAAAAGACCCTATCCACTCTACTGATCTGGCTGGAATAAAAGTATTCCCATACTTCT
CAGGTGCGAAACCCTTGACCCTGCGCCGGTTGCCGATCTGGCCAATCAGTATCTTCCCCATTCTGACGGGGCTTGGCAAAACAACAATATCATAATGTTT
AGCTGTATTAAAAAAGTTTATTATTGACATTCTAGCACGCCCGCGACCTTGCGCAGTCGCGTCGGCAAAATCCTCTAAATTAATTTCGTATTCTTCGTCG
GGGCCATACTCGGATATAAAGTTCTTTATACCTTGAGAATGAGCAATTCTTGGTCCCCAGTCATCTACATCTGAAAGATCGCCGTCGGGCAGAACCAATC
CTGGGGTATCAAGGAACGCTATGCCTTGTTCTTCAAAATTATCTAGAAACTGATACCCTTCTCCAGGGAACAATCTCCATACTTTTTGAGTGTCTGGGAT
CGTTGGTGCGTTCAAGTCGATTTGGATCATTTTATCGCCAATCTTTCCTTGCTTTGTATCAAGCGTAGGAAAGAACTGAGTCAAGGCGTGTTCAAACCAT
GATACGCGCATAGCACCAGTAAGGCTGGATCAATAAAATTGCTCTCAACGCTTTTGGGTGAGGTTGCTGCATAATACCG
Protein section
ORF number : 3
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 315 bp | 104 aa | 1657 | 1971 | + | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MQAIAHRCKDIGALDEGQYIAFRKVLAVKGWLKTEPLDGELPLEMPGLLIKAWAMLVSKGLIHEEGAEESIGFSLDMVQSLCGYIPDRNLEQSIPQISLL
NNKG
NNKG
Blast result :ORF 2
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 287 bp | 71 aa | 2689 | 2403 | - | No |
Annotation : XRE family transcriptional regulatorDescription : Transcriptional Regulator factor
ORF sequence :
MSPEQCRAARAWLNWSQQDLSARANIGLSTIRQFENGLRKPIANNLLAMRRAFEEAGVTFSDEPAGITVEGNPGATA
Blast result :ORF 3
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 972 bp | 323 aa | 2750 | 3721 | + | No |
Chemistry : DDE
ORF sequence :
MAQHFLLSKAARTLNLSKVARMSDDEAWSTFKAIRWEATEGAPFCPRCGCLKHSFIATRKLFKCAGCRHQYSVTSGTIFASRKLPIRDHLLAIAIFANGA
KGHSALQLSRDLDCQYRTAFVMAHKLREAVAAESADTTLEGNVEVDGAYFGGHVRPENMKADRRDRRLAENQTGKRRVVVVIRETKGKALTFAFRSEAES
VPTIVERVAPGSVVHADEAKGWDRLHASFKTHRINHQQAYSADGACTNQAESFFSRLRRAEMGVHHHVAGPYLAAYAGEMAWRENHRRVSNGEQYALITG
AALTHAPSKVWKGYWQRHTAKVA
KGHSALQLSRDLDCQYRTAFVMAHKLREAVAAESADTTLEGNVEVDGAYFGGHVRPENMKADRRDRRLAENQTGKRRVVVVIRETKGKALTFAFRSEAES
VPTIVERVAPGSVVHADEAKGWDRLHASFKTHRINHQQAYSADGACTNQAESFFSRLRRAEMGVHHHVAGPYLAAYAGEMAWRENHRRVSNGEQYALITG
AALTHAPSKVWKGYWQRHTAKVA
Blast result :
Comments
ISMtsp22 is 80% (transposase) aa similar to ISNwi4.
References
1] ISfinder annotation (2017)
2] Bai,Y., Muller,D.B., Srinivas,G., Garrido-Oter,R., Potthoff,E., Rott,M., Dombrowski,N., Munch,P.C., Spaepen,S., Remus-Emsermann,M., Huttel,B., McHardy,A.C., Vorholt,J.A. and Schulze-Lefert,P. (2015) Nature 528 (7582), 364-369.
2] Bai,Y., Muller,D.B., Srinivas,G., Garrido-Oter,R., Potthoff,E., Rott,M., Dombrowski,N., Munch,P.C., Spaepen,S., Remus-Emsermann,M., Huttel,B., McHardy,A.C., Vorholt,J.A. and Schulze-Lefert,P. (2015) Nature 528 (7582), 364-369.