ISMtsp21
- Family IS1595
- Group ISNha5
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| FPCB01000038 | ND | Methylobacterium sp. | Methylobacterium sp. 174MFSha1.1 |
DNA section
IS Length : 5458 bp
Ends
IR Length : 24/27
IRL : CGGAATTAGGTAGCAGACTCACCCGCGAGCGGGATCGGCCCAAGCACGCC
IRR : CGGAATTAGGTAGCAAGCTCACCCACGCCAACGCTTACCGTTGACCTCGT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AGCACCCGCGTA | CGAAAATG | GGTGGTCGTGCCGC | 8 |
DNA sequence
CGGAATTAGGTAGCAGACTCACCCGCGAGCGGGATCGGCCCAAGCACGCCTAGTTCGGCCAAGATCGCGATGATGGCGGCGCGGCGCCAATCGTTCGGGC
ACGGGTAGACGTGGCTGAGGGGCGATTTGCGGTTGTGAGCCAACCGCATCACCTTGCCGCTGTCGCGTAAAATTTGGGAAATCCAGCACGGCTTAGGAGT
AAAGCCGTGACGCTGCCTCGCCATATGCTGAGTGGTTTTGCAGATATTCATGTCGCGCACTCCAATGCCCAATCAGGCGCTTGGAGCATGGCCTCTTCTG
CGATGATCCGCATCAACTAAAAGGTGCTCTTCCGCAAGGGCATTTTCTCTGCGCTAGCGCCCCGGGTTGGGCGGCTCGCCTGCTACACGGCGCCGGGATA
ACCGGCACGAGGTTCCGGTTCGGGGAGCTTGGTGCATATGCCCGGGTTGCCGCATCGCGGCGGACATCATTGAAGGGCCTAGCCCTCGTTGACATCACAA
CAGAATGTTGCGGCTTGGGGGCTAGAAACTTGGTTCGCCAAAACCTTTCTCGACCGTAATATCGTACATATCGTTCTATAATAAGAATTATAACACTAGC
TGTCGTTATATGTTGCCGGCATCGGTAATGTCATGATACGAAGGCTTCAGTGACGAGGCTTGGGTGCCGTGCGCGAACTGACCGACATTCTTTCCGAACT
CGCCAGCCATCAGGCACGCCTCATGACAGAGGCGTTTGAAGCGGGGCGGGCCGCTGGCCGCGTAGAGGCTACGGCTGACATTTTGCACAAGATCGGCACC
ATCCTTCCAACGGGGCCGGTCGTAGCGCCGATGTTGCCTATCGCCTCCGAGGCTAAGGGTGAGGCTGCACGCCCAATCGCCCCTCCCCCCGCCTTCGGCG
GGGGAGAAGATACGGGTCGCGCCACGCCAGGGAGCGTTAAACCGCGGGTGGCACAGTTAGTGTCAGAGCGCCCGGGAATAACGACGCGCCAGATTGAGGA
CGCGACAGGGTTCAAGCTGAACAGCATCCGAGGAACGCTGTGGGCCTTGCACGCGCAGGATCACGTTATTGAGCGACGCAATGGGGGCTGGTACCCCTCC
GCTCAAAAAGATGAAGCCGCAGGCGCTAATCCAGAAGAGCGGACGCCTACGGCTTCTGACGATGAGGATCTTGACGGCCTCATCTAATCCCAACTCCCAC
CCGTGGCCCGGAAGCCGCAGAGAGGTAGGTGGCACATGAGAAGATAGACCCGCATGGAGCAGTCAGGCGTTAGTGCGTCTGATTGCCTCTTACGGGGGTA
GCACAGTGCGGGGTGCGGCTGTCCATCCAACGCCCCGAGGGTGCAAGTCCCTCTACCTCCACCTTATCGGAACAAGGCAAGCGGCCTCGCGCCAACGCTA
TTGCCATAGCACGATCTGCCGCGGCGATCCAGCGCGTAGCCCGAAACGAAAAAACCCCAGACGCCGGCCGAGGCCTCGCGCTGGGGCTGTCGCCCTGTGA
GCAGGGCAACGTTGACGTTCGGAAGGTAGGGTCGTCGTGTCGGAAATGCAAGAGGAAACGGAGCCTCTCCGGGCTGCGGTCTACATCGACGGCTTCAACC
TCTACCACCCTGTCCGGGAGATGGGGGAGCCGTTCCTGAAATGGTGCAACCTCTGGCGGCTTTCCGAGCTTTTGTGCGCGCCGCAAGCCTTGAGTCTGCG
CCGGGTTGTGTTCTGCACCGCCATGCCGCTTCACAAACCTGACTCGCTCGCGCGGCATCGCCTATTCAATAACGCTCAGGTTGCGAGCGGTGTTGATGTC
ATTGAGGGGCACTACATTTATAACGATGAAATTGGAAGATATTCAGAGAAGCAATCCGATATAAATGTGGCGCTTTCATTAATAATAGATGGAACTGATG
ATTTGTACGATTGGGCCTATCTAGTTAGCGCCGACTCCGACCAAGCGGCGACTGCTCGCGTCTTTAAAGAAAGGTTCCCCCAAAAGAAGCTTGCAGTCGT
TGCGCCTCCAAACCGCAAGCCGCCCGATAAAACGATGCCATACGCTGATCTTCACTTTAGCATCAGCAGGGATCAAATTGAACGCACGCTGCTACCTAAC
TTCGTGCCGACAAAGGACGGACGCTTTGTAAGGCGACCGGCCGAATACGACCCGCCGAATTGGTGGCTGCCACCCGATCAACGTCCTAAACGGAAGCGCT
AGGCCTCTCCTGCTCTTCCCTTGAAGAGCACCCCCAATGTCCCGCCGTCGTCCACGAACGCGATCCCCTGCGCTTCCAGGGCAGCTTTCATTGCCGCTAG
ATTGTTCGCGATCGGAACGCGACGGCCCTTCTCGTAGTCCCGCACGGTGGACAGCGAAACGGAGGCGGCAGCGGCCAACTCCGCCTGACCCCAATCCAGC
CATCCTCGGGCTGCTCGGCTCTGCTCTGGTGTCATCCGCTCAAGGTAGGTTCGCCCACGATGATCGTCAACGCCAACGAAAAGCGTTGACGCCCACTCTG
TCCGTGCTTATCACCAATGCCAACGGAAAACGTTGGCGACATGGCACAGCACTTCCTCCTCTCTCGCGCGGCCCGGACGCTCAGTCTGGCGAAGGTCGCG
CGCATGAGCGAGGAAGAGGCTCACGAAGCTTTCCGCCTGATCCGCTGGTGCGATACCGGCGGCGATCCGGTCTGCCCGCGCTGCGGCGGCCTTGAGCACA
GCTTCATCACCACCCGCAAGCTGTGGAAGTGCAAGGCGTGCAAGCATCAGTTCTCGGTCACGTCCGGCACCATCTTCGCGTCGCGCAAGTTGCCGATCGG
CACCTACCTGCTCGCCATCGCGATCTTCGTGAACGGTGCCAAGGGCCACAGCGCGCTTCAACTCTCTCGCGATCTGGACGTGCAGTACAAGACCGCGTTC
GTCCTCTCGCACAAGCTCCGCGAGGCCGTAGCGGCTGAGACGGCTGAGCACACCGCTTCTGGCGAGGTCGAGGTTGATGGCGCCTACTTCGGCGGCCACG
TCCGTCCCGAGAACCGCAAGGCGGATCGGAAGGATCGCCGCAAGGCCGAGAACCAGTCCGGCAAGCGCCAGTCGGTCATCGTGGTCCGTGAGCGGCAGGG
CCGCACCGTTTCCTTCGTGGCCGCCTCTGAGGGCGCTTCAGTCGCCACCGTGGCCGCTAGGATCGCTCTCGGCAGCACCGTGTACGCTGACGAGGCTGCC
GGGTGGGACAAGCTCCACGCCCGCTTCCTGACGAAGCGCATCAACCACTCTGAGAGCTACAGCGACGGCGAGGCTTGCACCAATCAGGCCGAGTCATACT
TTGCCCGCCTCCGGCGCGCTGAGATGGGCATCCATCACCGCATCAGCGGGCAGTACCTTGGCGCCTATGCCGGTGAGATGGCTTGGCGTGAGGATCACCG
GCGCAAGAGCAACGGTGTTCAGTACCTCATGATGGCGGGCGCGGCGCTCGCGCATCCCGTGTCGCGTCAGTGGAAGGGGTACTGGCAGCGCTCTAAGTAG
CTTGCGAACGACAAAAAATGCGCTAAATCTTTCAACATGACAGACCTGATCAACGTTTATTGCGACGAGTCATGCCACTTGGAAAGGGACCGCCAAACGG
CGATGGTCTTCGGCGCGATCTGGTGCGCAGAACATAAACGATACGAAATATCTCAGAGAATAAAAGATATACGCGCACGCCACGGCATGCCGCCAAGTTT
CGAGTTCAAGTGGACCAAGGTCGGTCAATCTAAACTTCAGATGTATATGGACCTTGTAGACTATTTTTTTGACGATAGCGATATACATTTCCGCGCACTT
GTCATACCAGACAAATCTATAATAGATCATAATAAATTCAACCAAATACATGATGATTGGTATTATAAAATGTATTTTAATATGATAAAAGTGATACTTA
AGCCCCTCGACTCTTACAATATATATTTAGATATTAAAGATACAAAAAGTCACTCTAAATCTCAGAAATTGCATGACGTATTGTGCAATAATGCTTATGA
CTTTCAAAGAAACATGATTAGGAAAGTTCAGCATATCAGGTCGCATGAGGCAGCCCAATCTCAGCTCGCCGATGTTTTGATTGGTGCCCTGTCTTACAAA
TTCAGGGGTAAGAATACAAGCGCCGCAAAGCTGTCGTTGATTGAGCGCATCGCGCAAAGAAGCGGCTATGGGCTAAATCGAAGCACCCTCTACAAAGAAG
AAAAGTTTAATATTCTCGTATGGCAGGGCCGTGAAGAGCAATGATGCCGGCGTGGCTTCCCGAGACAATTCATCTAAGCGATTGCGATGGAGACTGGAAT
AAATATATTGATGCTGTATACGAAATTTTTCGTAGCAGCTTGATGAAGGATCCACTTCAATTTAAGGGTAAAAGAGTTGGGATGAAGCGCCACCCTATGG
AACAGGATCGAGAGTCAACTTTTTGGCATTTGATATCTGAAGGCAGCGTCGAAGCAGAAAGGACCCCTGATCTTCGCCGATGCGAGCGCATTTCTTGGCC
GCGAGCAATTATTGATAACGCCAACGATGCATGCTTGAAAATATGGAATGAAGTTGTCAAAAACGATACGCGCGTGTATATTTGGTGCGAAAGCGCAGAA
TACCTTTTTATCTTGGCTGACCGCGGCGAATACGTTCTCCCGTGGACCGCCTATCCAGTCCCATTGATTCACTCTCAGCGTAAGCTGCAAAGGCGCTGGG
AACAGCATACCTCAAATGGCTAGCCCCGCTTCCAAGGAGGAAACGGGGCCGGAACTCCTTCCACACTGACGCTTGCGCTGGTGGATGAGATGCTCTGTAG
GTAGTGCGTTCGGATCGATTTGGCAAGCGGCCCCAGCACTCATCAGCCTATGAGGTTGGCGCCTTACAAGGCAGCCTCCTCGGCAGATCAAGCGACTGAT
AATAAACGAATAATTAATTTTTAACCGTCATATGGCAGTTGCCCATAACACGTTACCTCGTCCATCCGCCGTCTGCCGCACGCTCCCGCCTTCCTTAAGG
ATGCGCAGCGCCTTGGACACCCGCCGCGTGTGCTCCGTCATCAGCTTCCGATCGCGTGCGTCATGCCCTGAGAGCGACAGGATGGCCTGAGCCACCTGCC
GGCTCGTCATCGGCCCTGTAGCCTCGCGTAGGGCGTCCAGACAGCCTCGGGTTAGCTCTCCCCTGCCGAACAGCACTTCACGCTTCTGACGCGGCATGGC
GGCGTCTAGATCGCCCTGGTAGCCGAGAGTGGAGAGAACCCGATCCAAAGCTGCCACGTCGTTCTTGATCTCGGCCAAGCGGTCGCGGATGCGCTCTGCC
TCCCCAAAGAGATCGGCTCGCTTCGTCAGCAAGCCGGAGATGGTATGCTCGAACGTGTCGGTTCGAGAGCGGCGGATGGGATCGGTCATGCCGCCATCGT
ACCGGAACACGAGGTCAACGGTAAGCGTTGGCGTGGGTGAGCTTGCTACCTAATTCCG
ACGGGTAGACGTGGCTGAGGGGCGATTTGCGGTTGTGAGCCAACCGCATCACCTTGCCGCTGTCGCGTAAAATTTGGGAAATCCAGCACGGCTTAGGAGT
AAAGCCGTGACGCTGCCTCGCCATATGCTGAGTGGTTTTGCAGATATTCATGTCGCGCACTCCAATGCCCAATCAGGCGCTTGGAGCATGGCCTCTTCTG
CGATGATCCGCATCAACTAAAAGGTGCTCTTCCGCAAGGGCATTTTCTCTGCGCTAGCGCCCCGGGTTGGGCGGCTCGCCTGCTACACGGCGCCGGGATA
ACCGGCACGAGGTTCCGGTTCGGGGAGCTTGGTGCATATGCCCGGGTTGCCGCATCGCGGCGGACATCATTGAAGGGCCTAGCCCTCGTTGACATCACAA
CAGAATGTTGCGGCTTGGGGGCTAGAAACTTGGTTCGCCAAAACCTTTCTCGACCGTAATATCGTACATATCGTTCTATAATAAGAATTATAACACTAGC
TGTCGTTATATGTTGCCGGCATCGGTAATGTCATGATACGAAGGCTTCAGTGACGAGGCTTGGGTGCCGTGCGCGAACTGACCGACATTCTTTCCGAACT
CGCCAGCCATCAGGCACGCCTCATGACAGAGGCGTTTGAAGCGGGGCGGGCCGCTGGCCGCGTAGAGGCTACGGCTGACATTTTGCACAAGATCGGCACC
ATCCTTCCAACGGGGCCGGTCGTAGCGCCGATGTTGCCTATCGCCTCCGAGGCTAAGGGTGAGGCTGCACGCCCAATCGCCCCTCCCCCCGCCTTCGGCG
GGGGAGAAGATACGGGTCGCGCCACGCCAGGGAGCGTTAAACCGCGGGTGGCACAGTTAGTGTCAGAGCGCCCGGGAATAACGACGCGCCAGATTGAGGA
CGCGACAGGGTTCAAGCTGAACAGCATCCGAGGAACGCTGTGGGCCTTGCACGCGCAGGATCACGTTATTGAGCGACGCAATGGGGGCTGGTACCCCTCC
GCTCAAAAAGATGAAGCCGCAGGCGCTAATCCAGAAGAGCGGACGCCTACGGCTTCTGACGATGAGGATCTTGACGGCCTCATCTAATCCCAACTCCCAC
CCGTGGCCCGGAAGCCGCAGAGAGGTAGGTGGCACATGAGAAGATAGACCCGCATGGAGCAGTCAGGCGTTAGTGCGTCTGATTGCCTCTTACGGGGGTA
GCACAGTGCGGGGTGCGGCTGTCCATCCAACGCCCCGAGGGTGCAAGTCCCTCTACCTCCACCTTATCGGAACAAGGCAAGCGGCCTCGCGCCAACGCTA
TTGCCATAGCACGATCTGCCGCGGCGATCCAGCGCGTAGCCCGAAACGAAAAAACCCCAGACGCCGGCCGAGGCCTCGCGCTGGGGCTGTCGCCCTGTGA
GCAGGGCAACGTTGACGTTCGGAAGGTAGGGTCGTCGTGTCGGAAATGCAAGAGGAAACGGAGCCTCTCCGGGCTGCGGTCTACATCGACGGCTTCAACC
TCTACCACCCTGTCCGGGAGATGGGGGAGCCGTTCCTGAAATGGTGCAACCTCTGGCGGCTTTCCGAGCTTTTGTGCGCGCCGCAAGCCTTGAGTCTGCG
CCGGGTTGTGTTCTGCACCGCCATGCCGCTTCACAAACCTGACTCGCTCGCGCGGCATCGCCTATTCAATAACGCTCAGGTTGCGAGCGGTGTTGATGTC
ATTGAGGGGCACTACATTTATAACGATGAAATTGGAAGATATTCAGAGAAGCAATCCGATATAAATGTGGCGCTTTCATTAATAATAGATGGAACTGATG
ATTTGTACGATTGGGCCTATCTAGTTAGCGCCGACTCCGACCAAGCGGCGACTGCTCGCGTCTTTAAAGAAAGGTTCCCCCAAAAGAAGCTTGCAGTCGT
TGCGCCTCCAAACCGCAAGCCGCCCGATAAAACGATGCCATACGCTGATCTTCACTTTAGCATCAGCAGGGATCAAATTGAACGCACGCTGCTACCTAAC
TTCGTGCCGACAAAGGACGGACGCTTTGTAAGGCGACCGGCCGAATACGACCCGCCGAATTGGTGGCTGCCACCCGATCAACGTCCTAAACGGAAGCGCT
AGGCCTCTCCTGCTCTTCCCTTGAAGAGCACCCCCAATGTCCCGCCGTCGTCCACGAACGCGATCCCCTGCGCTTCCAGGGCAGCTTTCATTGCCGCTAG
ATTGTTCGCGATCGGAACGCGACGGCCCTTCTCGTAGTCCCGCACGGTGGACAGCGAAACGGAGGCGGCAGCGGCCAACTCCGCCTGACCCCAATCCAGC
CATCCTCGGGCTGCTCGGCTCTGCTCTGGTGTCATCCGCTCAAGGTAGGTTCGCCCACGATGATCGTCAACGCCAACGAAAAGCGTTGACGCCCACTCTG
TCCGTGCTTATCACCAATGCCAACGGAAAACGTTGGCGACATGGCACAGCACTTCCTCCTCTCTCGCGCGGCCCGGACGCTCAGTCTGGCGAAGGTCGCG
CGCATGAGCGAGGAAGAGGCTCACGAAGCTTTCCGCCTGATCCGCTGGTGCGATACCGGCGGCGATCCGGTCTGCCCGCGCTGCGGCGGCCTTGAGCACA
GCTTCATCACCACCCGCAAGCTGTGGAAGTGCAAGGCGTGCAAGCATCAGTTCTCGGTCACGTCCGGCACCATCTTCGCGTCGCGCAAGTTGCCGATCGG
CACCTACCTGCTCGCCATCGCGATCTTCGTGAACGGTGCCAAGGGCCACAGCGCGCTTCAACTCTCTCGCGATCTGGACGTGCAGTACAAGACCGCGTTC
GTCCTCTCGCACAAGCTCCGCGAGGCCGTAGCGGCTGAGACGGCTGAGCACACCGCTTCTGGCGAGGTCGAGGTTGATGGCGCCTACTTCGGCGGCCACG
TCCGTCCCGAGAACCGCAAGGCGGATCGGAAGGATCGCCGCAAGGCCGAGAACCAGTCCGGCAAGCGCCAGTCGGTCATCGTGGTCCGTGAGCGGCAGGG
CCGCACCGTTTCCTTCGTGGCCGCCTCTGAGGGCGCTTCAGTCGCCACCGTGGCCGCTAGGATCGCTCTCGGCAGCACCGTGTACGCTGACGAGGCTGCC
GGGTGGGACAAGCTCCACGCCCGCTTCCTGACGAAGCGCATCAACCACTCTGAGAGCTACAGCGACGGCGAGGCTTGCACCAATCAGGCCGAGTCATACT
TTGCCCGCCTCCGGCGCGCTGAGATGGGCATCCATCACCGCATCAGCGGGCAGTACCTTGGCGCCTATGCCGGTGAGATGGCTTGGCGTGAGGATCACCG
GCGCAAGAGCAACGGTGTTCAGTACCTCATGATGGCGGGCGCGGCGCTCGCGCATCCCGTGTCGCGTCAGTGGAAGGGGTACTGGCAGCGCTCTAAGTAG
CTTGCGAACGACAAAAAATGCGCTAAATCTTTCAACATGACAGACCTGATCAACGTTTATTGCGACGAGTCATGCCACTTGGAAAGGGACCGCCAAACGG
CGATGGTCTTCGGCGCGATCTGGTGCGCAGAACATAAACGATACGAAATATCTCAGAGAATAAAAGATATACGCGCACGCCACGGCATGCCGCCAAGTTT
CGAGTTCAAGTGGACCAAGGTCGGTCAATCTAAACTTCAGATGTATATGGACCTTGTAGACTATTTTTTTGACGATAGCGATATACATTTCCGCGCACTT
GTCATACCAGACAAATCTATAATAGATCATAATAAATTCAACCAAATACATGATGATTGGTATTATAAAATGTATTTTAATATGATAAAAGTGATACTTA
AGCCCCTCGACTCTTACAATATATATTTAGATATTAAAGATACAAAAAGTCACTCTAAATCTCAGAAATTGCATGACGTATTGTGCAATAATGCTTATGA
CTTTCAAAGAAACATGATTAGGAAAGTTCAGCATATCAGGTCGCATGAGGCAGCCCAATCTCAGCTCGCCGATGTTTTGATTGGTGCCCTGTCTTACAAA
TTCAGGGGTAAGAATACAAGCGCCGCAAAGCTGTCGTTGATTGAGCGCATCGCGCAAAGAAGCGGCTATGGGCTAAATCGAAGCACCCTCTACAAAGAAG
AAAAGTTTAATATTCTCGTATGGCAGGGCCGTGAAGAGCAATGATGCCGGCGTGGCTTCCCGAGACAATTCATCTAAGCGATTGCGATGGAGACTGGAAT
AAATATATTGATGCTGTATACGAAATTTTTCGTAGCAGCTTGATGAAGGATCCACTTCAATTTAAGGGTAAAAGAGTTGGGATGAAGCGCCACCCTATGG
AACAGGATCGAGAGTCAACTTTTTGGCATTTGATATCTGAAGGCAGCGTCGAAGCAGAAAGGACCCCTGATCTTCGCCGATGCGAGCGCATTTCTTGGCC
GCGAGCAATTATTGATAACGCCAACGATGCATGCTTGAAAATATGGAATGAAGTTGTCAAAAACGATACGCGCGTGTATATTTGGTGCGAAAGCGCAGAA
TACCTTTTTATCTTGGCTGACCGCGGCGAATACGTTCTCCCGTGGACCGCCTATCCAGTCCCATTGATTCACTCTCAGCGTAAGCTGCAAAGGCGCTGGG
AACAGCATACCTCAAATGGCTAGCCCCGCTTCCAAGGAGGAAACGGGGCCGGAACTCCTTCCACACTGACGCTTGCGCTGGTGGATGAGATGCTCTGTAG
GTAGTGCGTTCGGATCGATTTGGCAAGCGGCCCCAGCACTCATCAGCCTATGAGGTTGGCGCCTTACAAGGCAGCCTCCTCGGCAGATCAAGCGACTGAT
AATAAACGAATAATTAATTTTTAACCGTCATATGGCAGTTGCCCATAACACGTTACCTCGTCCATCCGCCGTCTGCCGCACGCTCCCGCCTTCCTTAAGG
ATGCGCAGCGCCTTGGACACCCGCCGCGTGTGCTCCGTCATCAGCTTCCGATCGCGTGCGTCATGCCCTGAGAGCGACAGGATGGCCTGAGCCACCTGCC
GGCTCGTCATCGGCCCTGTAGCCTCGCGTAGGGCGTCCAGACAGCCTCGGGTTAGCTCTCCCCTGCCGAACAGCACTTCACGCTTCTGACGCGGCATGGC
GGCGTCTAGATCGCCCTGGTAGCCGAGAGTGGAGAGAACCCGATCCAAAGCTGCCACGTCGTTCTTGATCTCGGCCAAGCGGTCGCGGATGCGCTCTGCC
TCCCCAAAGAGATCGGCTCGCTTCGTCAGCAAGCCGGAGATGGTATGCTCGAACGTGTCGGTTCGAGAGCGGCGGATGGGATCGGTCATGCCGCCATCGT
ACCGGAACACGAGGTCAACGGTAAGCGTTGGCGTGGGTGAGCTTGCTACCTAATTCCG
Protein section
ORF number : 4
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 246 bp | 81 aa | 251 | 6 | - | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MNICKTTQHMARQRHGFTPKPCWISQILRDSGKVMRLAHNRKSPLSHVYPCPNDWRRAAIIAILAELGVLGPIPLAGESAT
Blast result :ORF 2
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 960 bp | 319 aa | 2541 | 3500 | + | No |
Chemistry : DDE
ORF sequence :
MAQHFLLSRAARTLSLAKVARMSEEEAHEAFRLIRWCDTGGDPVCPRCGGLEHSFITTRKLWKCKACKHQFSVTSGTIFASRKLPIGTYLLAIAIFVNGA
KGHSALQLSRDLDVQYKTAFVLSHKLREAVAAETAEHTASGEVEVDGAYFGGHVRPENRKADRKDRRKAENQSGKRQSVIVVRERQGRTVSFVAASEGAS
VATVAARIALGSTVYADEAAGWDKLHARFLTKRINHSESYSDGEACTNQAESYFARLRRAEMGIHHRISGQYLGAYAGEMAWREDHRRKSNGVQYLMMAG
AALAHPVSRQWKGYWQRSK
KGHSALQLSRDLDVQYKTAFVLSHKLREAVAAETAEHTASGEVEVDGAYFGGHVRPENRKADRKDRRKAENQSGKRQSVIVVRERQGRTVSFVAASEGAS
VATVAARIALGSTVYADEAAGWDKLHARFLTKRINHSESYSDGEACTNQAESYFARLRRAEMGIHHRISGQYLGAYAGEMAWREDHRRKSNGVQYLMMAG
AALAHPVSRQWKGYWQRSK
Blast result :ORF 3
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 708 bp | 235 aa | 3537 | 4244 | + | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MTDLINVYCDESCHLERDRQTAMVFGAIWCAEHKRYEISQRIKDIRARHGMPPSFEFKWTKVGQSKLQMYMDLVDYFFDDSDIHFRALVIPDKSIIDHNK
FNQIHDDWYYKMYFNMIKVILKPLDSYNIYLDIKDTKSHSKSQKLHDVLCNNAYDFQRNMIRKVQHIRSHEAAQSQLADVLIGALSYKFRGKNTSAAKLS
LIERIAQRSGYGLNRSTLYKEEKFNILVWQGREEQ
FNQIHDDWYYKMYFNMIKVILKPLDSYNIYLDIKDTKSHSKSQKLHDVLCNNAYDFQRNMIRKVQHIRSHEAAQSQLADVLIGALSYKFRGKNTSAAKLS
LIERIAQRSGYGLNRSTLYKEEKFNILVWQGREEQ
Blast result :ORF 4
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 432 bp | 160 aa | 3663 | 3232 | - | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MFRYDGGMTDPIRRSRTDTFEHTISGLLTKRADLFGEAERIRDRLAEIKNDVAALDRVLSTLGYQGDLDAAMPRQKREVLFGRGELTRGCLDALREATGP
MTSRQVAQAILSLSGHDARDRKLMTEHTRRVSKALRILKEGGSVRQTADGRGNVLWATAI
MTSRQVAQAILSLSGHDARDRKLMTEHTRRVSKALRILKEGGSVRQTADGRGNVLWATAI
Blast result :
Comments
ISMtsp21 is 84% (transposase) aa similar to ISNwi4.
References
1] Isfinder annotation (2017)
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.