ISMtsp21

  • Family IS1595
  • Group ISNha5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FPCB01000038 ND Methylobacterium sp.
Methylobacterium sp. 174MFSha1.1
DNA section
IS Length : 5458 bp

Ends


IR Length : 24/27

IRL : CGGAATTAGGTAGCAGACTCACCCGCGAGCGGGATCGGCCCAAGCACGCC
IRR : CGGAATTAGGTAGCAAGCTCACCCACGCCAACGCTTACCGTTGACCTCGT

Insertion site


Left flankDirect repeatRight flankDR Length
AGCACCCGCGTACGAAAATGGGTGGTCGTGCCGC8

DNA sequence

CGGAATTAGGTAGCAGACTCACCCGCGAGCGGGATCGGCCCAAGCACGCCTAGTTCGGCCAAGATCGCGATGATGGCGGCGCGGCGCCAATCGTTCGGGC
ACGGGTAGACGTGGCTGAGGGGCGATTTGCGGTTGTGAGCCAACCGCATCACCTTGCCGCTGTCGCGTAAAATTTGGGAAATCCAGCACGGCTTAGGAGT
AAAGCCGTGACGCTGCCTCGCCATATGCTGAGTGGTTTTGCAGATATTCATGTCGCGCACTCCAATGCCCAATCAGGCGCTTGGAGCATGGCCTCTTCTG
CGATGATCCGCATCAACTAAAAGGTGCTCTTCCGCAAGGGCATTTTCTCTGCGCTAGCGCCCCGGGTTGGGCGGCTCGCCTGCTACACGGCGCCGGGATA
ACCGGCACGAGGTTCCGGTTCGGGGAGCTTGGTGCATATGCCCGGGTTGCCGCATCGCGGCGGACATCATTGAAGGGCCTAGCCCTCGTTGACATCACAA
CAGAATGTTGCGGCTTGGGGGCTAGAAACTTGGTTCGCCAAAACCTTTCTCGACCGTAATATCGTACATATCGTTCTATAATAAGAATTATAACACTAGC
TGTCGTTATATGTTGCCGGCATCGGTAATGTCATGATACGAAGGCTTCAGTGACGAGGCTTGGGTGCCGTGCGCGAACTGACCGACATTCTTTCCGAACT
CGCCAGCCATCAGGCACGCCTCATGACAGAGGCGTTTGAAGCGGGGCGGGCCGCTGGCCGCGTAGAGGCTACGGCTGACATTTTGCACAAGATCGGCACC
ATCCTTCCAACGGGGCCGGTCGTAGCGCCGATGTTGCCTATCGCCTCCGAGGCTAAGGGTGAGGCTGCACGCCCAATCGCCCCTCCCCCCGCCTTCGGCG
GGGGAGAAGATACGGGTCGCGCCACGCCAGGGAGCGTTAAACCGCGGGTGGCACAGTTAGTGTCAGAGCGCCCGGGAATAACGACGCGCCAGATTGAGGA
CGCGACAGGGTTCAAGCTGAACAGCATCCGAGGAACGCTGTGGGCCTTGCACGCGCAGGATCACGTTATTGAGCGACGCAATGGGGGCTGGTACCCCTCC
GCTCAAAAAGATGAAGCCGCAGGCGCTAATCCAGAAGAGCGGACGCCTACGGCTTCTGACGATGAGGATCTTGACGGCCTCATCTAATCCCAACTCCCAC
CCGTGGCCCGGAAGCCGCAGAGAGGTAGGTGGCACATGAGAAGATAGACCCGCATGGAGCAGTCAGGCGTTAGTGCGTCTGATTGCCTCTTACGGGGGTA
GCACAGTGCGGGGTGCGGCTGTCCATCCAACGCCCCGAGGGTGCAAGTCCCTCTACCTCCACCTTATCGGAACAAGGCAAGCGGCCTCGCGCCAACGCTA
TTGCCATAGCACGATCTGCCGCGGCGATCCAGCGCGTAGCCCGAAACGAAAAAACCCCAGACGCCGGCCGAGGCCTCGCGCTGGGGCTGTCGCCCTGTGA
GCAGGGCAACGTTGACGTTCGGAAGGTAGGGTCGTCGTGTCGGAAATGCAAGAGGAAACGGAGCCTCTCCGGGCTGCGGTCTACATCGACGGCTTCAACC
TCTACCACCCTGTCCGGGAGATGGGGGAGCCGTTCCTGAAATGGTGCAACCTCTGGCGGCTTTCCGAGCTTTTGTGCGCGCCGCAAGCCTTGAGTCTGCG
CCGGGTTGTGTTCTGCACCGCCATGCCGCTTCACAAACCTGACTCGCTCGCGCGGCATCGCCTATTCAATAACGCTCAGGTTGCGAGCGGTGTTGATGTC
ATTGAGGGGCACTACATTTATAACGATGAAATTGGAAGATATTCAGAGAAGCAATCCGATATAAATGTGGCGCTTTCATTAATAATAGATGGAACTGATG
ATTTGTACGATTGGGCCTATCTAGTTAGCGCCGACTCCGACCAAGCGGCGACTGCTCGCGTCTTTAAAGAAAGGTTCCCCCAAAAGAAGCTTGCAGTCGT
TGCGCCTCCAAACCGCAAGCCGCCCGATAAAACGATGCCATACGCTGATCTTCACTTTAGCATCAGCAGGGATCAAATTGAACGCACGCTGCTACCTAAC
TTCGTGCCGACAAAGGACGGACGCTTTGTAAGGCGACCGGCCGAATACGACCCGCCGAATTGGTGGCTGCCACCCGATCAACGTCCTAAACGGAAGCGCT
AGGCCTCTCCTGCTCTTCCCTTGAAGAGCACCCCCAATGTCCCGCCGTCGTCCACGAACGCGATCCCCTGCGCTTCCAGGGCAGCTTTCATTGCCGCTAG
ATTGTTCGCGATCGGAACGCGACGGCCCTTCTCGTAGTCCCGCACGGTGGACAGCGAAACGGAGGCGGCAGCGGCCAACTCCGCCTGACCCCAATCCAGC
CATCCTCGGGCTGCTCGGCTCTGCTCTGGTGTCATCCGCTCAAGGTAGGTTCGCCCACGATGATCGTCAACGCCAACGAAAAGCGTTGACGCCCACTCTG
TCCGTGCTTATCACCAATGCCAACGGAAAACGTTGGCGACATGGCACAGCACTTCCTCCTCTCTCGCGCGGCCCGGACGCTCAGTCTGGCGAAGGTCGCG
CGCATGAGCGAGGAAGAGGCTCACGAAGCTTTCCGCCTGATCCGCTGGTGCGATACCGGCGGCGATCCGGTCTGCCCGCGCTGCGGCGGCCTTGAGCACA
GCTTCATCACCACCCGCAAGCTGTGGAAGTGCAAGGCGTGCAAGCATCAGTTCTCGGTCACGTCCGGCACCATCTTCGCGTCGCGCAAGTTGCCGATCGG
CACCTACCTGCTCGCCATCGCGATCTTCGTGAACGGTGCCAAGGGCCACAGCGCGCTTCAACTCTCTCGCGATCTGGACGTGCAGTACAAGACCGCGTTC
GTCCTCTCGCACAAGCTCCGCGAGGCCGTAGCGGCTGAGACGGCTGAGCACACCGCTTCTGGCGAGGTCGAGGTTGATGGCGCCTACTTCGGCGGCCACG
TCCGTCCCGAGAACCGCAAGGCGGATCGGAAGGATCGCCGCAAGGCCGAGAACCAGTCCGGCAAGCGCCAGTCGGTCATCGTGGTCCGTGAGCGGCAGGG
CCGCACCGTTTCCTTCGTGGCCGCCTCTGAGGGCGCTTCAGTCGCCACCGTGGCCGCTAGGATCGCTCTCGGCAGCACCGTGTACGCTGACGAGGCTGCC
GGGTGGGACAAGCTCCACGCCCGCTTCCTGACGAAGCGCATCAACCACTCTGAGAGCTACAGCGACGGCGAGGCTTGCACCAATCAGGCCGAGTCATACT
TTGCCCGCCTCCGGCGCGCTGAGATGGGCATCCATCACCGCATCAGCGGGCAGTACCTTGGCGCCTATGCCGGTGAGATGGCTTGGCGTGAGGATCACCG
GCGCAAGAGCAACGGTGTTCAGTACCTCATGATGGCGGGCGCGGCGCTCGCGCATCCCGTGTCGCGTCAGTGGAAGGGGTACTGGCAGCGCTCTAAGTAG
CTTGCGAACGACAAAAAATGCGCTAAATCTTTCAACATGACAGACCTGATCAACGTTTATTGCGACGAGTCATGCCACTTGGAAAGGGACCGCCAAACGG
CGATGGTCTTCGGCGCGATCTGGTGCGCAGAACATAAACGATACGAAATATCTCAGAGAATAAAAGATATACGCGCACGCCACGGCATGCCGCCAAGTTT
CGAGTTCAAGTGGACCAAGGTCGGTCAATCTAAACTTCAGATGTATATGGACCTTGTAGACTATTTTTTTGACGATAGCGATATACATTTCCGCGCACTT
GTCATACCAGACAAATCTATAATAGATCATAATAAATTCAACCAAATACATGATGATTGGTATTATAAAATGTATTTTAATATGATAAAAGTGATACTTA
AGCCCCTCGACTCTTACAATATATATTTAGATATTAAAGATACAAAAAGTCACTCTAAATCTCAGAAATTGCATGACGTATTGTGCAATAATGCTTATGA
CTTTCAAAGAAACATGATTAGGAAAGTTCAGCATATCAGGTCGCATGAGGCAGCCCAATCTCAGCTCGCCGATGTTTTGATTGGTGCCCTGTCTTACAAA
TTCAGGGGTAAGAATACAAGCGCCGCAAAGCTGTCGTTGATTGAGCGCATCGCGCAAAGAAGCGGCTATGGGCTAAATCGAAGCACCCTCTACAAAGAAG
AAAAGTTTAATATTCTCGTATGGCAGGGCCGTGAAGAGCAATGATGCCGGCGTGGCTTCCCGAGACAATTCATCTAAGCGATTGCGATGGAGACTGGAAT
AAATATATTGATGCTGTATACGAAATTTTTCGTAGCAGCTTGATGAAGGATCCACTTCAATTTAAGGGTAAAAGAGTTGGGATGAAGCGCCACCCTATGG
AACAGGATCGAGAGTCAACTTTTTGGCATTTGATATCTGAAGGCAGCGTCGAAGCAGAAAGGACCCCTGATCTTCGCCGATGCGAGCGCATTTCTTGGCC
GCGAGCAATTATTGATAACGCCAACGATGCATGCTTGAAAATATGGAATGAAGTTGTCAAAAACGATACGCGCGTGTATATTTGGTGCGAAAGCGCAGAA
TACCTTTTTATCTTGGCTGACCGCGGCGAATACGTTCTCCCGTGGACCGCCTATCCAGTCCCATTGATTCACTCTCAGCGTAAGCTGCAAAGGCGCTGGG
AACAGCATACCTCAAATGGCTAGCCCCGCTTCCAAGGAGGAAACGGGGCCGGAACTCCTTCCACACTGACGCTTGCGCTGGTGGATGAGATGCTCTGTAG
GTAGTGCGTTCGGATCGATTTGGCAAGCGGCCCCAGCACTCATCAGCCTATGAGGTTGGCGCCTTACAAGGCAGCCTCCTCGGCAGATCAAGCGACTGAT
AATAAACGAATAATTAATTTTTAACCGTCATATGGCAGTTGCCCATAACACGTTACCTCGTCCATCCGCCGTCTGCCGCACGCTCCCGCCTTCCTTAAGG
ATGCGCAGCGCCTTGGACACCCGCCGCGTGTGCTCCGTCATCAGCTTCCGATCGCGTGCGTCATGCCCTGAGAGCGACAGGATGGCCTGAGCCACCTGCC
GGCTCGTCATCGGCCCTGTAGCCTCGCGTAGGGCGTCCAGACAGCCTCGGGTTAGCTCTCCCCTGCCGAACAGCACTTCACGCTTCTGACGCGGCATGGC
GGCGTCTAGATCGCCCTGGTAGCCGAGAGTGGAGAGAACCCGATCCAAAGCTGCCACGTCGTTCTTGATCTCGGCCAAGCGGTCGCGGATGCGCTCTGCC
TCCCCAAAGAGATCGGCTCGCTTCGTCAGCAAGCCGGAGATGGTATGCTCGAACGTGTCGGTTCGAGAGCGGCGGATGGGATCGGTCATGCCGCCATCGT
ACCGGAACACGAGGTCAACGGTAAGCGTTGGCGTGGGTGAGCTTGCTACCTAATTCCG
Protein section
ORF number : 4

 

ORF 1
LengthBeginEndStrandFusion ORF
246 bp81 aa2516-No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MNICKTTQHMARQRHGFTPKPCWISQILRDSGKVMRLAHNRKSPLSHVYPCPNDWRRAAIIAILAELGVLGPIPLAGESAT

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
960 bp319 aa25413500+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAQHFLLSRAARTLSLAKVARMSEEEAHEAFRLIRWCDTGGDPVCPRCGGLEHSFITTRKLWKCKACKHQFSVTSGTIFASRKLPIGTYLLAIAIFVNGA
KGHSALQLSRDLDVQYKTAFVLSHKLREAVAAETAEHTASGEVEVDGAYFGGHVRPENRKADRKDRRKAENQSGKRQSVIVVRERQGRTVSFVAASEGAS
VATVAARIALGSTVYADEAAGWDKLHARFLTKRINHSESYSDGEACTNQAESYFARLRRAEMGIHHRISGQYLGAYAGEMAWREDHRRKSNGVQYLMMAG
AALAHPVSRQWKGYWQRSK

 

Blast result :
ORF 3
LengthBeginEndStrandFusion ORF
708 bp235 aa35374244+No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MTDLINVYCDESCHLERDRQTAMVFGAIWCAEHKRYEISQRIKDIRARHGMPPSFEFKWTKVGQSKLQMYMDLVDYFFDDSDIHFRALVIPDKSIIDHNK
FNQIHDDWYYKMYFNMIKVILKPLDSYNIYLDIKDTKSHSKSQKLHDVLCNNAYDFQRNMIRKVQHIRSHEAAQSQLADVLIGALSYKFRGKNTSAAKLS
LIERIAQRSGYGLNRSTLYKEEKFNILVWQGREEQ

 

Blast result :
ORF 4
LengthBeginEndStrandFusion ORF
432 bp160 aa36633232-No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MFRYDGGMTDPIRRSRTDTFEHTISGLLTKRADLFGEAERIRDRLAEIKNDVAALDRVLSTLGYQGDLDAAMPRQKREVLFGRGELTRGCLDALREATGP
MTSRQVAQAILSLSGHDARDRKLMTEHTRRVSKALRILKEGGSVRQTADGRGNVLWATAI

 

Blast result :
Comments
ISMtsp21 is 84% (transposase) aa similar to ISNwi4.
References
1] Isfinder annotation (2017)
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.