ISMspa1
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FLOB01000007 | ND | Marinomonas spartinae | Marinomonas spartinae CECT 8886 |
DNA section
IS Length : 1028 bp
Ends
IR Length : 24/25
IRL : AAGGGGTATCCATTTAGAGCAACCAATGTCAATATATAGTGATGAACAAA
IRR : AAGGGCTATCCATTTAGAGCAACCAGACACTATATTTAGTGTTTATCTGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTGGTACTGT | GTTTATAT | ACAGTAATGT | 8 |
DNA sequence
AAGGGGTATCCATTTAGAGCAACCAATGTCAATATATAGTGATGAACAAAAAATCTTCTTCACTCACAGCGGGTATTGATTACCCTAAAAATTGGAGCCA
ATTTGTTGACTGGTTTCACGATGAGCAAGCTTGTCGTGATTATCTGTACGCGCTTCGCTGGCCTAATGGCTTCATATGCCCCAATTGTTTGGTACATAAT
GTGCCCTATACTCTTCCAAAAAATAAACTTAAATGTGTTCAGTGTCGAAAACAAACTTCTGTCACAGCAGGCACTATTTTTGAGAAAACGAGAACGCCTC
TTAAAGAATGGTTTGCTGCGATTTGGTACCTCACCAATCAGAAAAATGGCGTAAGTGCACTTGGTATTCAGCGCTTACTCGGACTTGGCAGCTATCAAAC
GGCTTGGGCGATATTACACCGATTACGCTACGCAATGATCAATCCTGAAAGAGACAAATTATCTGGACTTGTTGAGGTAGACGAAACCTTTGTTGGTGGT
GTAGTCGATATAAATCAACAAGATAAGAAGAAATTTGTTGTATTGGTTGCAATAGAGCTTATAGAACCAAAAGGGTTTGGTCGCATTAGATTAAGACAGG
TAGATAAAGCAACAAAAAACAACGTTGAGCAATTTATAACAGATGTTATTGAGCCGAATAGTCGAATTCACACTGACGGATCTGCCATTTATGGTTCAGT
TGATAACATGGGATATTCAAGAAAAAAGACCGTACATCTTGGTTCAAATATACCAGCCCACGAAACTATGCCAGGGGTTCACAGAGTAGCTTCTTTATTA
AAGCGCTGGCTATTGGGAACCTATCAAGGAGCTGTTCAATCTAAGCAGCTCGATTACTACTTAGATGAATATACCTTTAGATTTAACAGAAGAAAATCTC
GGTCTAGAGGGCTATTGTTTTATCGATTACTTGAGCAATCGGTAACCACAAAACCCCTAACCTATAAGGACATTAAAACCAGATAAACACTAAATATAGT
GTCTGGTTGCTCTAAATGGATAGCCCTT
ATTTGTTGACTGGTTTCACGATGAGCAAGCTTGTCGTGATTATCTGTACGCGCTTCGCTGGCCTAATGGCTTCATATGCCCCAATTGTTTGGTACATAAT
GTGCCCTATACTCTTCCAAAAAATAAACTTAAATGTGTTCAGTGTCGAAAACAAACTTCTGTCACAGCAGGCACTATTTTTGAGAAAACGAGAACGCCTC
TTAAAGAATGGTTTGCTGCGATTTGGTACCTCACCAATCAGAAAAATGGCGTAAGTGCACTTGGTATTCAGCGCTTACTCGGACTTGGCAGCTATCAAAC
GGCTTGGGCGATATTACACCGATTACGCTACGCAATGATCAATCCTGAAAGAGACAAATTATCTGGACTTGTTGAGGTAGACGAAACCTTTGTTGGTGGT
GTAGTCGATATAAATCAACAAGATAAGAAGAAATTTGTTGTATTGGTTGCAATAGAGCTTATAGAACCAAAAGGGTTTGGTCGCATTAGATTAAGACAGG
TAGATAAAGCAACAAAAAACAACGTTGAGCAATTTATAACAGATGTTATTGAGCCGAATAGTCGAATTCACACTGACGGATCTGCCATTTATGGTTCAGT
TGATAACATGGGATATTCAAGAAAAAAGACCGTACATCTTGGTTCAAATATACCAGCCCACGAAACTATGCCAGGGGTTCACAGAGTAGCTTCTTTATTA
AAGCGCTGGCTATTGGGAACCTATCAAGGAGCTGTTCAATCTAAGCAGCTCGATTACTACTTAGATGAATATACCTTTAGATTTAACAGAAGAAAATCTC
GGTCTAGAGGGCTATTGTTTTATCGATTACTTGAGCAATCGGTAACCACAAAACCCCTAACCTATAAGGACATTAAAACCAGATAAACACTAAATATAGT
GTCTGGTTGCTCTAAATGGATAGCCCTT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
945 bp | 314 aa | 42 | 986 | + | No |
Chemistry : DDE
ORF sequence :
MNKKSSSLTAGIDYPKNWSQFVDWFHDEQACRDYLYALRWPNGFICPNCLVHNVPYTLPKNKLKCVQCRKQTSVTAGTIFEKTRTPLKEWFAAIWYLTNQ
KNGVSALGIQRLLGLGSYQTAWAILHRLRYAMINPERDKLSGLVEVDETFVGGVVDINQQDKKKFVVLVAIELIEPKGFGRIRLRQVDKATKNNVEQFIT
DVIEPNSRIHTDGSAIYGSVDNMGYSRKKTVHLGSNIPAHETMPGVHRVASLLKRWLLGTYQGAVQSKQLDYYLDEYTFRFNRRKSRSRGLLFYRLLEQS
VTTKPLTYKDIKTR
KNGVSALGIQRLLGLGSYQTAWAILHRLRYAMINPERDKLSGLVEVDETFVGGVVDINQQDKKKFVVLVAIELIEPKGFGRIRLRQVDKATKNNVEQFIT
DVIEPNSRIHTDGSAIYGSVDNMGYSRKKTVHLGSNIPAHETMPGVHRVASLLKRWLLGTYQGAVQSKQLDYYLDEYTFRFNRRKSRSRGLLFYRLLEQS
VTTKPLTYKDIKTR
Blast result :
Comments
ISMspa1 is 82% aa similar to ISSod11.
References
1] ISfinder annotation (2017)
2] Rodrigo-Torres,Lidia. and Arahal,R.David. (2016) Direct GenBank submission.
2] Rodrigo-Torres,Lidia. and Arahal,R.David. (2016) Direct GenBank submission.