ISMmo2
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LWQU01000030 | ND | Magnetospirillum moscoviense | Magnetospirillum moscoviense BB-1 |
DNA section
IS Length : 1790 bp
Ends
IR Length : 40/44
IRL : CATGCCTATCCGCTTAACGCACTCACCCACTACATGTAGTGTGCGCGCCT
IRR : CGTGCCTATCCGCTTAACGCACTCACCCGCTACATCTAGGGTGCTGCCAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTAACGTCTA | CACTGAAC | ATGCTAAATC | 8 |
DNA sequence
CATGCCTATCCGCTTAACGCACTCACCCACTACATGTAGTGTGCGCGCCTTATCCGGTTGACGCACACGATATAATCCTGTATCTTCACGGGGAATGATT
ACGGGAGTTCGCCATGCCACAGCCAGCCGTAGCATATATGACCGAGGACGAGTTCTTTGAGTTTGTCCAGACGCGTGATGAGAAGTGGGAGCTGATAGAC
GGTGAGCCGATGATGATGGCTGGCGCAACTCAACGCCACCAAGACATCGCGGCCAATACGTTGACCTCACTTCATACCCAATTGCGGGGTAAAAAGTGCC
GACCGACGGCTGCCGACACTGGCGTACCCACGAGTAACGGCACGATCAGATATCCTGATGTCGTCGTCGATTGTGGCAAGCGTGACGACCAAGCTATGCG
TGCCACAGCGCCGACGCTAGTTATCGAAGTCCTCTCACCATCGACAAGGGGCTTTGATTCTCATAAGAAGGTGATTGAGTACAAGTCACATCCTGACATC
AAGTACATCTTGCTGATTGACACAAATAATGCATGCTCACTGTTGCATTTTCGCGATGGCGAAGGCTGGGGCGAGGTTATGTATGACAGCCTTGATGATG
TCATCGAGTTTCCCGAAGTTGGTGCTACGCTTGCATTAAGTGACATCTATTTTGGTCTAGAGATGAAGCCCAAATTGGTGCGGGAAAGGGTTTGCTCCAA
GTGTGGAATGACACCCTGTGCTTGTGACGAGAGCGGCCCCATTCCAGGCATGTGATCGTGGACGTTCTCACTCGTTCCGATCTGCCGTTCCCGCAGTCTC
TGCCTGAGTTCCAGCAACTGTTTCCGGATGATGCCGCTTGCGCTCTCTATCTGGAAACGGCGCGGTGGGCTGACGGTTTTGCCTGTCCGAGTTGTGGTGT
AGTCGGCGAGCCGTTTAGAATTTCCACTCGTCCAGGCGTCCTGCGGTGTCGCGCCTGCCGCAAGGACACTGGCCTGACCGTCGGCACGGTGATGGAGCGC
AGCCGTGTACCGCTCAGCACTTGGTTCTGGGCTGCCTATCTGATCGCCAGCCAGACGCAAGGCATGTCCGCCGTCCAGTTCCAGCGCCAGCTCGGCCTGT
CTCGCTACGAAACAGCATTCGGCATCTTGCACAAGCTCCGCGCTGGCATGGTCCGGCCCGATCAGGACCGCATCGGCGGCCGGGACGGCGAACATGTCGA
GGTGGATGAGACGCTGGTGGGCGGACGTACACGCGGCGAAGGCCGAGGTGTCCACCGCAAGACGCTGGTCTCTTGCGCAGTCGAAGTTCGGCACCGGGAA
CCCGGAACCGCACAGGACAACAGGAGGGATGGACGCTATGCCGGACGCGTCCGCCTGGCCATCGTGCCTGATCGGTCAGCCGAGTCGCTCTGCGGTTTCG
TGGAAGGCGCGGTTGAGCCGGGAACGCTTCTGATCACCGATGACTGGAGTGCCTACGCCAGCTTGCGTAAGCGTGGGTACGACCATCATGCCATCGCCGA
ATGCGGTGAACCGGAGATCGCCGACGAGTTCCTGCCTATCGTCCATCTGGTGTTTTCAAATTTGAAGACTTGGCTGAACGGTATCCACCACGGCGTCAGC
GCCAAGCATTTGCAGGCGTATCTGAACGAGTTCACTTTCCGATTCAACCGCCGCTTCTATCCGTTTAACGCCTTCCGATCACTGCTGGGCATCGCTGGAG
ATACGATCGCTCCAACTTTCGGTGAGCTTTATTCCGGCGAATGGCAGCACCCTAGATGTAGCGGGTGAGTGCGTTAAGCGGATAGGCACG
ACGGGAGTTCGCCATGCCACAGCCAGCCGTAGCATATATGACCGAGGACGAGTTCTTTGAGTTTGTCCAGACGCGTGATGAGAAGTGGGAGCTGATAGAC
GGTGAGCCGATGATGATGGCTGGCGCAACTCAACGCCACCAAGACATCGCGGCCAATACGTTGACCTCACTTCATACCCAATTGCGGGGTAAAAAGTGCC
GACCGACGGCTGCCGACACTGGCGTACCCACGAGTAACGGCACGATCAGATATCCTGATGTCGTCGTCGATTGTGGCAAGCGTGACGACCAAGCTATGCG
TGCCACAGCGCCGACGCTAGTTATCGAAGTCCTCTCACCATCGACAAGGGGCTTTGATTCTCATAAGAAGGTGATTGAGTACAAGTCACATCCTGACATC
AAGTACATCTTGCTGATTGACACAAATAATGCATGCTCACTGTTGCATTTTCGCGATGGCGAAGGCTGGGGCGAGGTTATGTATGACAGCCTTGATGATG
TCATCGAGTTTCCCGAAGTTGGTGCTACGCTTGCATTAAGTGACATCTATTTTGGTCTAGAGATGAAGCCCAAATTGGTGCGGGAAAGGGTTTGCTCCAA
GTGTGGAATGACACCCTGTGCTTGTGACGAGAGCGGCCCCATTCCAGGCATGTGATCGTGGACGTTCTCACTCGTTCCGATCTGCCGTTCCCGCAGTCTC
TGCCTGAGTTCCAGCAACTGTTTCCGGATGATGCCGCTTGCGCTCTCTATCTGGAAACGGCGCGGTGGGCTGACGGTTTTGCCTGTCCGAGTTGTGGTGT
AGTCGGCGAGCCGTTTAGAATTTCCACTCGTCCAGGCGTCCTGCGGTGTCGCGCCTGCCGCAAGGACACTGGCCTGACCGTCGGCACGGTGATGGAGCGC
AGCCGTGTACCGCTCAGCACTTGGTTCTGGGCTGCCTATCTGATCGCCAGCCAGACGCAAGGCATGTCCGCCGTCCAGTTCCAGCGCCAGCTCGGCCTGT
CTCGCTACGAAACAGCATTCGGCATCTTGCACAAGCTCCGCGCTGGCATGGTCCGGCCCGATCAGGACCGCATCGGCGGCCGGGACGGCGAACATGTCGA
GGTGGATGAGACGCTGGTGGGCGGACGTACACGCGGCGAAGGCCGAGGTGTCCACCGCAAGACGCTGGTCTCTTGCGCAGTCGAAGTTCGGCACCGGGAA
CCCGGAACCGCACAGGACAACAGGAGGGATGGACGCTATGCCGGACGCGTCCGCCTGGCCATCGTGCCTGATCGGTCAGCCGAGTCGCTCTGCGGTTTCG
TGGAAGGCGCGGTTGAGCCGGGAACGCTTCTGATCACCGATGACTGGAGTGCCTACGCCAGCTTGCGTAAGCGTGGGTACGACCATCATGCCATCGCCGA
ATGCGGTGAACCGGAGATCGCCGACGAGTTCCTGCCTATCGTCCATCTGGTGTTTTCAAATTTGAAGACTTGGCTGAACGGTATCCACCACGGCGTCAGC
GCCAAGCATTTGCAGGCGTATCTGAACGAGTTCACTTTCCGATTCAACCGCCGCTTCTATCCGTTTAACGCCTTCCGATCACTGCTGGGCATCGCTGGAG
ATACGATCGCTCCAACTTTCGGTGAGCTTTATTCCGGCGAATGGCAGCACCCTAGATGTAGCGGGTGAGTGCGTTAAGCGGATAGGCACG
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
618 bp | 205 aa | 138 | 755 | + | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MTEDEFFEFVQTRDEKWELIDGEPMMMAGATQRHQDIAANTLTSLHTQLRGKKCRPTAADTGVPTSNGTIRYPDVVVDCGKRDDQAMRATAPTLVIEVLS
PSTRGFDSHKKVIEYKSHPDIKYILLIDTNNACSLLHFRDGEGWGEVMYDSLDDVIEFPEVGATLALSDIYFGLEMKPKLVRERVCSKCGMTPCACDESG
PIPGM
PSTRGFDSHKKVIEYKSHPDIKYILLIDTNNACSLLHFRDGEGWGEVMYDSLDDVIEFPEVGATLALSDIYFGLEMKPKLVRERVCSKCGMTPCACDESG
PIPGM
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1011 bp | 336 aa | 758 | 1768 | + | No |
Chemistry : DDE
ORF sequence :
MDVLTRSDLPFPQSLPEFQQLFPDDAACALYLETARWADGFACPSCGVVGEPFRISTRPGVLRCRACRKDTGLTVGTVMERSRVPLSTWFWAAYLIASQT
QGMSAVQFQRQLGLSRYETAFGILHKLRAGMVRPDQDRIGGRDGEHVEVDETLVGGRTRGEGRGVHRKTLVSCAVEVRHREPGTAQDNRRDGRYAGRVRL
AIVPDRSAESLCGFVEGAVEPGTLLITDDWSAYASLRKRGYDHHAIAECGEPEIADEFLPIVHLVFSNLKTWLNGIHHGVSAKHLQAYLNEFTFRFNRRF
YPFNAFRSLLGIAGDTIAPTFGELYSGEWQHPRCSG
QGMSAVQFQRQLGLSRYETAFGILHKLRAGMVRPDQDRIGGRDGEHVEVDETLVGGRTRGEGRGVHRKTLVSCAVEVRHREPGTAQDNRRDGRYAGRVRL
AIVPDRSAESLCGFVEGAVEPGTLLITDDWSAYASLRKRGYDHHAIAECGEPEIADEFLPIVHLVFSNLKTWLNGIHHGVSAKHLQAYLNEFTFRFNRRF
YPFNAFRSLLGIAGDTIAPTFGELYSGEWQHPRCSG
Blast result :
Comments
ISMmo2 is 88% (transposase) aa similar to ISAcr1.
References
1] ISfinder annotation (2017)
2] Koziaeva,V., Dziuba,M.V., Ivanov,T.M., Kuznetsov,B. and Grouzdev,D.S. (2016) Direct GenBank submission.
2] Koziaeva,V., Dziuba,M.V., Ivanov,T.M., Kuznetsov,B. and Grouzdev,D.S. (2016) Direct GenBank submission.