ISMgr1

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_023065 ND Magnetospirillum gryphiswaldense
Magnetospirillum gryphiswaldense MSR-1 v2
DNA section
IS Length : 1160 bp

Ends


IR Length : 23/24

IRL : GCGGCTTATGCCGCTGACCCATTAAGTGCCTTGAGAAGGGTCTGACGTCG
IRR : GCGGCTTATGCCTCTGACCCATTAGCGTCATCATCCGGTTTCGGGCGCCG

Insertion site


Left flankDirect repeatRight flankDR Length
CGTATCCGCCGCCTCACCATCAGCTATT8

DNA sequence

GCGGCTTATGCCGCTGACCCATTAAGTGCCTTGAGAAGGGTCTGACGTCGGGATATGTTCGCGACCATGGCGAAGCAGTTGTCCCTTCTCGACTTCCAAA
CGTGGTTTCCCGACGATGAAAGCTGCTACCGTCTGCTACTGGAGCGCCGTTGGCCAAACGGGTTTGTCTGCCCGAAATGCGGTGCGCAGAACGCCGCCCG
TCTGAGCAGTCGCGCCTATACGTTCGCGTGTAGGGACTGTGGATCGCAGACGTCGGCGACAGCCGGAACCATCATGCATCGGACCCGCCTTTCGCTTCGG
GCGTGGTTCTGCGCCGCCCACCTGATGGTGACACATTCCAACGGAATGTCGGCGCGACAGATGGCTGGGCAACTGGGAATCACCTATCGGGCTGCCTGGC
TGCTGGAGCAGAAGCTTCGGCGAGCGATGATCGATCCGGAGCGCGCCCCACTGAATGGCGTCATCGAAATCGACCAGACCGAGATGCCGTTCCACGACCT
GGAGGAACCCGGCAAGCCGCTCAAGGAAGGAAAAATCCTCGTGATCGGCGCAGTCGAGGTCCGTGATCGAACCACGGGAAAGCCGCAGAAACCCAAAGCT
CTTGGCGCAAAATACCTCGACACCCTGTCGGGCCGCTGCCGGATGGCCGTGATCCCCAGCAACGAGAAGCCAAACATCCACGCCTTCATCAAGGCCAACA
TCGTCCCCGGCGCCACCCTGGTTTCCGATGGCCACGCATCCTACACCGGGCTGGTCGGATACCGGCATGATCCCCGCGTCATCGGCAATATGGCCGCTCA
TATCCCCCTGCACTGGATCCATCGGGTCTTCGCCCTTCTGAAGCGCTGGGGGCTCGGCACCTATCATGGTTTCCGCCGCGAGCACATCGACACCTACCTC
AATGAGTTCGTCTTTCGTTACAACCGGCGCTTTTACCGCCACGTCTCGTTCGAGACCATCCTCGGCCTGTCCGCCGACCATGCACCGATGTCGTACTGGG
AAATCATAAAACGCGACAATCCCAGGAAGGGTAGACCGGTGAACCGAAAAAGCCCCCGCCAACGCAAGACCCAGGACGGCGTTCAGATCGACGGGACCGG
GCCGAAAAAGCGGCGCCCGAAACCGGATGATGACGCTAATGGGTCAGAGGCATAAGCCGC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1101 bp366 aa551155+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MFATMAKQLSLLDFQTWFPDDESCYRLLLERRWPNGFVCPKCGAQNAARLSSRAYTFACRDCGSQTSATAGTIMHRTRLSLRAWFCAAHLMVTHSNGMSA
RQMAGQLGITYRAAWLLEQKLRRAMIDPERAPLNGVIEIDQTEMPFHDLEEPGKPLKEGKILVIGAVEVRDRTTGKPQKPKALGAKYLDTLSGRCRMAVI
PSNEKPNIHAFIKANIVPGATLVSDGHASYTGLVGYRHDPRVIGNMAAHIPLHWIHRVFALLKRWGLGTYHGFRREHIDTYLNEFVFRYNRRFYRHVSFE
TILGLSADHAPMSYWEIIKRDNPRKGRPVNRKSPRQRKTQDGVQIDGTGPKKRRPKPDDDANGSEA

 

Blast result :
Comments
ISMgr1 is 64% aa similar to ISRsp21.
References
1] ISfinder annotation (2017)
2] Wang,X., Wang,Q., Zhang,W., Wang,Y., Li,L., Wen,T., Zhang,T., Zhang,Y., Xu,J., Hu,J., Li,S., Liu,L., Liu,J., Jiang,W., Tian,J., Li,Y., Schuler,D., Wang,L. and Li,J. (2014) Genome Announc 2 (2).