ISMgr1
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_023065 | ND | Magnetospirillum gryphiswaldense | Magnetospirillum gryphiswaldense MSR-1 v2 |
DNA section
IS Length : 1160 bp
Ends
IR Length : 23/24
IRL : GCGGCTTATGCCGCTGACCCATTAAGTGCCTTGAGAAGGGTCTGACGTCG
IRR : GCGGCTTATGCCTCTGACCCATTAGCGTCATCATCCGGTTTCGGGCGCCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGTATCCGCC | GCCTCACC | ATCAGCTATT | 8 |
DNA sequence
GCGGCTTATGCCGCTGACCCATTAAGTGCCTTGAGAAGGGTCTGACGTCGGGATATGTTCGCGACCATGGCGAAGCAGTTGTCCCTTCTCGACTTCCAAA
CGTGGTTTCCCGACGATGAAAGCTGCTACCGTCTGCTACTGGAGCGCCGTTGGCCAAACGGGTTTGTCTGCCCGAAATGCGGTGCGCAGAACGCCGCCCG
TCTGAGCAGTCGCGCCTATACGTTCGCGTGTAGGGACTGTGGATCGCAGACGTCGGCGACAGCCGGAACCATCATGCATCGGACCCGCCTTTCGCTTCGG
GCGTGGTTCTGCGCCGCCCACCTGATGGTGACACATTCCAACGGAATGTCGGCGCGACAGATGGCTGGGCAACTGGGAATCACCTATCGGGCTGCCTGGC
TGCTGGAGCAGAAGCTTCGGCGAGCGATGATCGATCCGGAGCGCGCCCCACTGAATGGCGTCATCGAAATCGACCAGACCGAGATGCCGTTCCACGACCT
GGAGGAACCCGGCAAGCCGCTCAAGGAAGGAAAAATCCTCGTGATCGGCGCAGTCGAGGTCCGTGATCGAACCACGGGAAAGCCGCAGAAACCCAAAGCT
CTTGGCGCAAAATACCTCGACACCCTGTCGGGCCGCTGCCGGATGGCCGTGATCCCCAGCAACGAGAAGCCAAACATCCACGCCTTCATCAAGGCCAACA
TCGTCCCCGGCGCCACCCTGGTTTCCGATGGCCACGCATCCTACACCGGGCTGGTCGGATACCGGCATGATCCCCGCGTCATCGGCAATATGGCCGCTCA
TATCCCCCTGCACTGGATCCATCGGGTCTTCGCCCTTCTGAAGCGCTGGGGGCTCGGCACCTATCATGGTTTCCGCCGCGAGCACATCGACACCTACCTC
AATGAGTTCGTCTTTCGTTACAACCGGCGCTTTTACCGCCACGTCTCGTTCGAGACCATCCTCGGCCTGTCCGCCGACCATGCACCGATGTCGTACTGGG
AAATCATAAAACGCGACAATCCCAGGAAGGGTAGACCGGTGAACCGAAAAAGCCCCCGCCAACGCAAGACCCAGGACGGCGTTCAGATCGACGGGACCGG
GCCGAAAAAGCGGCGCCCGAAACCGGATGATGACGCTAATGGGTCAGAGGCATAAGCCGC
CGTGGTTTCCCGACGATGAAAGCTGCTACCGTCTGCTACTGGAGCGCCGTTGGCCAAACGGGTTTGTCTGCCCGAAATGCGGTGCGCAGAACGCCGCCCG
TCTGAGCAGTCGCGCCTATACGTTCGCGTGTAGGGACTGTGGATCGCAGACGTCGGCGACAGCCGGAACCATCATGCATCGGACCCGCCTTTCGCTTCGG
GCGTGGTTCTGCGCCGCCCACCTGATGGTGACACATTCCAACGGAATGTCGGCGCGACAGATGGCTGGGCAACTGGGAATCACCTATCGGGCTGCCTGGC
TGCTGGAGCAGAAGCTTCGGCGAGCGATGATCGATCCGGAGCGCGCCCCACTGAATGGCGTCATCGAAATCGACCAGACCGAGATGCCGTTCCACGACCT
GGAGGAACCCGGCAAGCCGCTCAAGGAAGGAAAAATCCTCGTGATCGGCGCAGTCGAGGTCCGTGATCGAACCACGGGAAAGCCGCAGAAACCCAAAGCT
CTTGGCGCAAAATACCTCGACACCCTGTCGGGCCGCTGCCGGATGGCCGTGATCCCCAGCAACGAGAAGCCAAACATCCACGCCTTCATCAAGGCCAACA
TCGTCCCCGGCGCCACCCTGGTTTCCGATGGCCACGCATCCTACACCGGGCTGGTCGGATACCGGCATGATCCCCGCGTCATCGGCAATATGGCCGCTCA
TATCCCCCTGCACTGGATCCATCGGGTCTTCGCCCTTCTGAAGCGCTGGGGGCTCGGCACCTATCATGGTTTCCGCCGCGAGCACATCGACACCTACCTC
AATGAGTTCGTCTTTCGTTACAACCGGCGCTTTTACCGCCACGTCTCGTTCGAGACCATCCTCGGCCTGTCCGCCGACCATGCACCGATGTCGTACTGGG
AAATCATAAAACGCGACAATCCCAGGAAGGGTAGACCGGTGAACCGAAAAAGCCCCCGCCAACGCAAGACCCAGGACGGCGTTCAGATCGACGGGACCGG
GCCGAAAAAGCGGCGCCCGAAACCGGATGATGACGCTAATGGGTCAGAGGCATAAGCCGC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1101 bp | 366 aa | 55 | 1155 | + | No |
Chemistry : DDE
ORF sequence :
MFATMAKQLSLLDFQTWFPDDESCYRLLLERRWPNGFVCPKCGAQNAARLSSRAYTFACRDCGSQTSATAGTIMHRTRLSLRAWFCAAHLMVTHSNGMSA
RQMAGQLGITYRAAWLLEQKLRRAMIDPERAPLNGVIEIDQTEMPFHDLEEPGKPLKEGKILVIGAVEVRDRTTGKPQKPKALGAKYLDTLSGRCRMAVI
PSNEKPNIHAFIKANIVPGATLVSDGHASYTGLVGYRHDPRVIGNMAAHIPLHWIHRVFALLKRWGLGTYHGFRREHIDTYLNEFVFRYNRRFYRHVSFE
TILGLSADHAPMSYWEIIKRDNPRKGRPVNRKSPRQRKTQDGVQIDGTGPKKRRPKPDDDANGSEA
RQMAGQLGITYRAAWLLEQKLRRAMIDPERAPLNGVIEIDQTEMPFHDLEEPGKPLKEGKILVIGAVEVRDRTTGKPQKPKALGAKYLDTLSGRCRMAVI
PSNEKPNIHAFIKANIVPGATLVSDGHASYTGLVGYRHDPRVIGNMAAHIPLHWIHRVFALLKRWGLGTYHGFRREHIDTYLNEFVFRYNRRFYRHVSFE
TILGLSADHAPMSYWEIIKRDNPRKGRPVNRKSPRQRKTQDGVQIDGTGPKKRRPKPDDDANGSEA
Blast result :
Comments
ISMgr1 is 64% aa similar to ISRsp21.
References
1] ISfinder annotation (2017)
2] Wang,X., Wang,Q., Zhang,W., Wang,Y., Li,L., Wen,T., Zhang,T., Zhang,Y., Xu,J., Hu,J., Li,S., Liu,L., Liu,J., Jiang,W., Tian,J., Li,Y., Schuler,D., Wang,L. and Li,J. (2014) Genome Announc 2 (2).
2] Wang,X., Wang,Q., Zhang,W., Wang,Y., Li,L., Wen,T., Zhang,T., Zhang,Y., Xu,J., Hu,J., Li,S., Liu,L., Liu,J., Jiang,W., Tian,J., Li,Y., Schuler,D., Wang,L. and Li,J. (2014) Genome Announc 2 (2).