ISMeal1
- Family IS1595
- Group IS1595
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| FO082060 | ND | Methylomicrobium alcaliphilum | Methylomicrobium alcaliphilum 20Z |
DNA section
IS Length : 1055 bp
Ends
IR Length : 22/24
IRL : CCTGATTAGCAAGCTTCTTCAGCTAAAGCCCAAAAACCAGAATATTCTTG
IRR : CCTGATTAGCAAGATGCTTCAGCTTGCCGAAGCCAAGTGTCCGAGCGGGG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TTGGCCGACCCATCAGAGAA | TATCCCTATGAGGGCACATT | 0 |
DNA sequence
CCTGATTAGCAAGCTTCTTCAGCTAAAGCCCAAAAACCAGAATATTCTTGGCTAGAAGGCGCATACTGGCCACTTAATTACCCAGGAGTCCAGCTCATGG
CCATGAATAAAATCCAGTTTCAAGCAGGCCTGTCACTGCCTGCTTTTTTAGCGCAATTCGGCACCGAAGCGCAATGTGAAGACAGTTTGGAACAGTCCCG
CTGGCCCCAAGGCTTTCGCTGCCCCGACTGCGGTCATGCCGAACACTATGTGCTTAAATCAGGTGGACGCAAAACCTTCCAATGCCGGTCCTGCCGATTA
CAGACATCGCTGATTGCGGGCACTCTATTCCAGAGCACCCACCTTAAACTGACGATCTGGTTTCTGGCGATCTACTTGATCAGCCAGGCCAAGACCGGCT
TGTCCGCCCTCGCTTTGAAACGGCAGTTGGGTGTCAGTTATCTTACCGCTTGGCTGATCCAACAGAAACTGATGCAAGCGATGGTCGAACGGGATGCCCG
GTATACCTTGAGTGGCGACGTCCAGGTGGACGATGCCTATCTCGGTGGCGAATTGGCTGGCGGTAAGGCCGGGCGCGGCTCTGAGAATAAGGTGCCATTT
GTCGCGGCGCTCTCGCTCAGCCCCGAGGGACAGCCGAGGTTTATCAAAATGGCGCCGATTCCGGGTTTTACCCGTAAAGCCATTGCCAATTGGGCACAAG
GTGATCTTAGCCCCTGTTGTGTCGTGCGGTCCGGCGGCTTGGCCTGTTTTGCCGGCGTGACCGATGCCGATTGTCAACACCAGGTAACCGTCGCCGGTGG
CCGGAAACCCAAAGACCTGCCGGAGTTCTGTTGGATCAATACGGTACTGGGCAATCTCAAAACCAGTCTAGGCGGCGCCTACCATGCTTTCGATTTCGCA
AAATACGGCACCAGTTACTTAGGTGCGTTCGCGTACCGCTTTAACCGGCGCTTCCAACTCGATACCATTACTACGCGCCTTATCGTGGCAGCGGCTACGA
CTGGACCCCGCTCGGACACTTGGCTTCGGCAAGCTGAAGCATCTTGCTAATCAGG
CCATGAATAAAATCCAGTTTCAAGCAGGCCTGTCACTGCCTGCTTTTTTAGCGCAATTCGGCACCGAAGCGCAATGTGAAGACAGTTTGGAACAGTCCCG
CTGGCCCCAAGGCTTTCGCTGCCCCGACTGCGGTCATGCCGAACACTATGTGCTTAAATCAGGTGGACGCAAAACCTTCCAATGCCGGTCCTGCCGATTA
CAGACATCGCTGATTGCGGGCACTCTATTCCAGAGCACCCACCTTAAACTGACGATCTGGTTTCTGGCGATCTACTTGATCAGCCAGGCCAAGACCGGCT
TGTCCGCCCTCGCTTTGAAACGGCAGTTGGGTGTCAGTTATCTTACCGCTTGGCTGATCCAACAGAAACTGATGCAAGCGATGGTCGAACGGGATGCCCG
GTATACCTTGAGTGGCGACGTCCAGGTGGACGATGCCTATCTCGGTGGCGAATTGGCTGGCGGTAAGGCCGGGCGCGGCTCTGAGAATAAGGTGCCATTT
GTCGCGGCGCTCTCGCTCAGCCCCGAGGGACAGCCGAGGTTTATCAAAATGGCGCCGATTCCGGGTTTTACCCGTAAAGCCATTGCCAATTGGGCACAAG
GTGATCTTAGCCCCTGTTGTGTCGTGCGGTCCGGCGGCTTGGCCTGTTTTGCCGGCGTGACCGATGCCGATTGTCAACACCAGGTAACCGTCGCCGGTGG
CCGGAAACCCAAAGACCTGCCGGAGTTCTGTTGGATCAATACGGTACTGGGCAATCTCAAAACCAGTCTAGGCGGCGCCTACCATGCTTTCGATTTCGCA
AAATACGGCACCAGTTACTTAGGTGCGTTCGCGTACCGCTTTAACCGGCGCTTCCAACTCGATACCATTACTACGCGCCTTATCGTGGCAGCGGCTACGA
CTGGACCCCGCTCGGACACTTGGCTTCGGCAAGCTGAAGCATCTTGCTAATCAGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 954 bp | 317 aa | 97 | 1050 | + | No |
Chemistry : DDE
ORF sequence :
MAMNKIQFQAGLSLPAFLAQFGTEAQCEDSLEQSRWPQGFRCPDCGHAEHYVLKSGGRKTFQCRSCRLQTSLIAGTLFQSTHLKLTIWFLAIYLISQAKT
GLSALALKRQLGVSYLTAWLIQQKLMQAMVERDARYTLSGDVQVDDAYLGGELAGGKAGRGSENKVPFVAALSLSPEGQPRFIKMAPIPGFTRKAIANWA
QGDLSPCCVVRSGGLACFAGVTDADCQHQVTVAGGRKPKDLPEFCWINTVLGNLKTSLGGAYHAFDFAKYGTSYLGAFAYRFNRRFQLDTITTRLIVAAA
TTGPRSDTWLRQAEASC
GLSALALKRQLGVSYLTAWLIQQKLMQAMVERDARYTLSGDVQVDDAYLGGELAGGKAGRGSENKVPFVAALSLSPEGQPRFIKMAPIPGFTRKAIANWA
QGDLSPCCVVRSGGLACFAGVTDADCQHQVTVAGGRKPKDLPEFCWINTVLGNLKTSLGGAYHAFDFAKYGTSYLGAFAYRFNRRFQLDTITTRLIVAAA
TTGPRSDTWLRQAEASC
Blast result :
Comments
ISMeal1 is 78% aa similar to ISMko1.
References
1] ISfinder annotation (2017)
2] Vuilleumier,S., Khmelenina,V.N., Bringel,F., Reshetnikov,A.S., Lajus,A., Mangenot,S., Rouy,Z., Op den Camp,H.J., Jetten,M.S., Dispirito,A.A., Dunfield,P., Klotz,M.G., Semrau,J.D., Stein,L.Y., Barbe,V., Medigue,C., Trotsenko,Y.A. and Kalyuzhnaya,M.G. (2012) J. Bacteriol. 194 (2), 551-552.
2] Vuilleumier,S., Khmelenina,V.N., Bringel,F., Reshetnikov,A.S., Lajus,A., Mangenot,S., Rouy,Z., Op den Camp,H.J., Jetten,M.S., Dispirito,A.A., Dunfield,P., Klotz,M.G., Semrau,J.D., Stein,L.Y., Barbe,V., Medigue,C., Trotsenko,Y.A. and Kalyuzhnaya,M.G. (2012) J. Bacteriol. 194 (2), 551-552.