ISMko2
- Family IS1595
- Group IS1595
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LUUL01000074 | ND | Methylomonas koyamae | Methylomonas koyamae R-49807 |
DNA section
IS Length : 1054 bp
Ends
IR Length : 24/25
IRL : CCTGATTAGAAAGCTCCTTCAGCTTACCTGCGGAATCCAAGAGATTACCG
IRR : CCTGATTAGCAAGCTCCTTCAGCTTGACGAAGCCAAGTGGCTGGACGCGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TAAGCAGTCA | TACAAAAT | TAACTTGGTA | 8 |
DNA sequence
CCTGATTAGAAAGCTCCTTCAGCTTACCTGCGGAATCCAAGAGATTACCGACTAAAAAGCGCATACTGGCTTCCAATTCCCAGGAGACGCCTGTCATGGC
CATGAATCGTATCCAATTTCAAAAGGGCTTATCACTGCCCGCTTTTCTCGAGCAGTTTGGTACGGAAGCCCAATGCGAAACCGCACTGGAGAAAGCCCGT
TGGCCCGATGGGTTTCGTTGTCCGCGATGCGGGCAAGCACCGCATTACCTGCTCAGCATGGGTAGCCATCAGACTTACCAATGTCGAACTTGTCGGCTAC
AAACATCCCTCACTGCAGGCACTTTATTTCAGAGCACCCAGTTGGCATTAACGGTCTGGTTTATGGCGATCTATCTGATCAGCCAGGCCAAAACCAACTT
GTCCGCCTTGGCATTGAAACGCCTACTGGGCGTCAGTTACCCCACGGCGTGGCTGATGCAGCAAAAGCTGATGCAAACCATGGCGGAACGAGACGCGCTT
TATACCCTGGATGGACAGGTCCAGATTGACGATGCCTACCTCGGTGGTGAACTGGCGGGCGGCAAAGCCGGTCGTGGCTCCGAGAATAAAGTCCCCTTTG
TGGCAGCGGTTTCACTCGATAAGTCTGGACACCCTCTGTATATCAAAATGGCACCGGTTCCAGGTTTTACGCTCAAGGCCATTGCTGAATGGGCCCAACG
CGATCTCAGTCCGGGCTGCGTTGTCATTTCCGATGGTTTAGCCTGTTTTACGGGCGTCACGGCGGCGGGGTGTCAACATCAACCTATCGTCGTCGAGGGA
CGCAAGCCCAAGGAGTTACCCGAATTCAGTTGGATCAACACCGTATTGGGTAATCTCAAGACCAGTTTCGGCGGCGCTTACCACGCCTTCGATTTTTCCA
AGTATGGCATTCGTTACTTGGCGGCATTTGTGTATCGCTTTAACCGACGCTTCCACTTGGAGACTTTACCCACTCGTCTACTCGTTGCCGCCATCACTAT
CGGCCCGCGTCCAGCCACTTGGCTTCGTCAAGCTGAAGGAGCTTGCTAATCAGG
CATGAATCGTATCCAATTTCAAAAGGGCTTATCACTGCCCGCTTTTCTCGAGCAGTTTGGTACGGAAGCCCAATGCGAAACCGCACTGGAGAAAGCCCGT
TGGCCCGATGGGTTTCGTTGTCCGCGATGCGGGCAAGCACCGCATTACCTGCTCAGCATGGGTAGCCATCAGACTTACCAATGTCGAACTTGTCGGCTAC
AAACATCCCTCACTGCAGGCACTTTATTTCAGAGCACCCAGTTGGCATTAACGGTCTGGTTTATGGCGATCTATCTGATCAGCCAGGCCAAAACCAACTT
GTCCGCCTTGGCATTGAAACGCCTACTGGGCGTCAGTTACCCCACGGCGTGGCTGATGCAGCAAAAGCTGATGCAAACCATGGCGGAACGAGACGCGCTT
TATACCCTGGATGGACAGGTCCAGATTGACGATGCCTACCTCGGTGGTGAACTGGCGGGCGGCAAAGCCGGTCGTGGCTCCGAGAATAAAGTCCCCTTTG
TGGCAGCGGTTTCACTCGATAAGTCTGGACACCCTCTGTATATCAAAATGGCACCGGTTCCAGGTTTTACGCTCAAGGCCATTGCTGAATGGGCCCAACG
CGATCTCAGTCCGGGCTGCGTTGTCATTTCCGATGGTTTAGCCTGTTTTACGGGCGTCACGGCGGCGGGGTGTCAACATCAACCTATCGTCGTCGAGGGA
CGCAAGCCCAAGGAGTTACCCGAATTCAGTTGGATCAACACCGTATTGGGTAATCTCAAGACCAGTTTCGGCGGCGCTTACCACGCCTTCGATTTTTCCA
AGTATGGCATTCGTTACTTGGCGGCATTTGTGTATCGCTTTAACCGACGCTTCCACTTGGAGACTTTACCCACTCGTCTACTCGTTGCCGCCATCACTAT
CGGCCCGCGTCCAGCCACTTGGCTTCGTCAAGCTGAAGGAGCTTGCTAATCAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
954 bp | 317 aa | 96 | 1049 | + | No |
Chemistry : DDE
ORF sequence :
MAMNRIQFQKGLSLPAFLEQFGTEAQCETALEKARWPDGFRCPRCGQAPHYLLSMGSHQTYQCRTCRLQTSLTAGTLFQSTQLALTVWFMAIYLISQAKT
NLSALALKRLLGVSYPTAWLMQQKLMQTMAERDALYTLDGQVQIDDAYLGGELAGGKAGRGSENKVPFVAAVSLDKSGHPLYIKMAPVPGFTLKAIAEWA
QRDLSPGCVVISDGLACFTGVTAAGCQHQPIVVEGRKPKELPEFSWINTVLGNLKTSFGGAYHAFDFSKYGIRYLAAFVYRFNRRFHLETLPTRLLVAAI
TIGPRPATWLRQAEGAC
NLSALALKRLLGVSYPTAWLMQQKLMQTMAERDALYTLDGQVQIDDAYLGGELAGGKAGRGSENKVPFVAAVSLDKSGHPLYIKMAPVPGFTLKAIAEWA
QRDLSPGCVVISDGLACFTGVTAAGCQHQPIVVEGRKPKELPEFSWINTVLGNLKTSFGGAYHAFDFSKYGIRYLAAFVYRFNRRFHLETLPTRLLVAAI
TIGPRPATWLRQAEGAC
Blast result :
Comments
ISMko2 is 79% aa similar to ISMko1.
References
1] ISfinder annotation (2017)
2] Heylen,K., De Vos,P. and Vekeman,B. (2016) Direct GenBank submission.
2] Heylen,K., De Vos,P. and Vekeman,B. (2016) Direct GenBank submission.