ISMetp1
- Family IS1595
- Group IS1595
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LXWX01000105 | ND | Methylosinus sp. | Methylosinus sp. 3S-1 |
DNA section
IS Length : 996 bp
Ends
IR Length : 26/36
IRL : CCTGCTTACGCCTGTTGATCAGCCAAGTTTTAGAGGTTAGAACAAACAAG
IRR : CCTGCTTACGCCTGAAAGTCCGCCAGCTTGAGGAGGCGGTAGGGCATCGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTGATGAACA | AAGGCGGT | TGTCGTTGCC | 8 |
DNA sequence
CCTGCTTACGCCTGTTGATCAGCCAAGTTTTAGAGGTTAGAACAAACAAGGAACATACTGATTTGGCGAGGACGAGGCGATGGCGCGCAACAAAGTGCAA
TTTCAGAAAGGCCTCAGCGAAAGTGCATTCGAGGCGGCCTATGGAAGCGAAGAGCAATGCCACGCGGCGCTCGTCGCCTGGCGTTGGCCCGATGGCTTCG
AATGCCCCGATTGCGGTGGCAAGGCGCATTGCGTGGTGACGCGCGGCGCGCGCAAGCTGTTTCAGTGCGACGCCTGCCGAAAGCAAACGTCGGTGCGCGC
CGGGACCATTTTCGCATCGAGCAAATTGCCGCTGCGCGTGTGGTTCAAAGCGATGTATCACCTCACGCAATCCAAGCAGGGAATCTCTGGCCTCGAATTG
TCGCGGCGTCTCGGGATCACCTACAATGCCGCGTGGAAGTTGAAGCACAAGCTGGCGCAGGTCATGCTCGAGCGCAACGCGACGAAGCGGCTGAAGGGCA
AGGTCCAGATGGACGACGCCTATCTCGGCGGCGAACGCTCGGGCGCCGTGGGGCGCGGAGCCGAGGGCAAGACGCCCTTCGTCGCCGCCGTCGAGACGAC
GGATGACGACAAGCCGCACAAGATCATCCTGCGGCGCGTGAAAGCGTTCAGCAAGGCGGAGTTGCGCAAGCTCGCCGGCGCCGCGCTCGAGAGTGGCGCG
GCTGTCGTCTCCGACACGCACAGCGCGATCGTCACCGGGTCGGGAGCAAAAGCCGCGAAAACCCCAGCCTTCAAATGGGTCAACACCGCCCTCGGCAATA
TCAAGGCGGCGATCGTCGGAACCTATCGAGCCGTCGGGGAAAAACATGTCCCGCGCTACCTCGCCGAATTCGAATACCGCTTCAATCGGCGATACGATCT
CGCCAACATGATCCCGCGCCTTGCCGTCATCGCGACAGCAACAGCCCCGATGCCCTACCGCCTCCTCAAGCTGGCGGACTTTCAGGCGTAAGCAGG
TTTCAGAAAGGCCTCAGCGAAAGTGCATTCGAGGCGGCCTATGGAAGCGAAGAGCAATGCCACGCGGCGCTCGTCGCCTGGCGTTGGCCCGATGGCTTCG
AATGCCCCGATTGCGGTGGCAAGGCGCATTGCGTGGTGACGCGCGGCGCGCGCAAGCTGTTTCAGTGCGACGCCTGCCGAAAGCAAACGTCGGTGCGCGC
CGGGACCATTTTCGCATCGAGCAAATTGCCGCTGCGCGTGTGGTTCAAAGCGATGTATCACCTCACGCAATCCAAGCAGGGAATCTCTGGCCTCGAATTG
TCGCGGCGTCTCGGGATCACCTACAATGCCGCGTGGAAGTTGAAGCACAAGCTGGCGCAGGTCATGCTCGAGCGCAACGCGACGAAGCGGCTGAAGGGCA
AGGTCCAGATGGACGACGCCTATCTCGGCGGCGAACGCTCGGGCGCCGTGGGGCGCGGAGCCGAGGGCAAGACGCCCTTCGTCGCCGCCGTCGAGACGAC
GGATGACGACAAGCCGCACAAGATCATCCTGCGGCGCGTGAAAGCGTTCAGCAAGGCGGAGTTGCGCAAGCTCGCCGGCGCCGCGCTCGAGAGTGGCGCG
GCTGTCGTCTCCGACACGCACAGCGCGATCGTCACCGGGTCGGGAGCAAAAGCCGCGAAAACCCCAGCCTTCAAATGGGTCAACACCGCCCTCGGCAATA
TCAAGGCGGCGATCGTCGGAACCTATCGAGCCGTCGGGGAAAAACATGTCCCGCGCTACCTCGCCGAATTCGAATACCGCTTCAATCGGCGATACGATCT
CGCCAACATGATCCCGCGCCTTGCCGTCATCGCGACAGCAACAGCCCCGATGCCCTACCGCCTCCTCAAGCTGGCGGACTTTCAGGCGTAAGCAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
912 bp | 303 aa | 80 | 991 | + | No |
Chemistry : DDE
ORF sequence :
MARNKVQFQKGLSESAFEAAYGSEEQCHAALVAWRWPDGFECPDCGGKAHCVVTRGARKLFQCDACRKQTSVRAGTIFASSKLPLRVWFKAMYHLTQSKQ
GISGLELSRRLGITYNAAWKLKHKLAQVMLERNATKRLKGKVQMDDAYLGGERSGAVGRGAEGKTPFVAAVETTDDDKPHKIILRRVKAFSKAELRKLAG
AALESGAAVVSDTHSAIVTGSGAKAAKTPAFKWVNTALGNIKAAIVGTYRAVGEKHVPRYLAEFEYRFNRRYDLANMIPRLAVIATATAPMPYRLLKLAD
FQA
GISGLELSRRLGITYNAAWKLKHKLAQVMLERNATKRLKGKVQMDDAYLGGERSGAVGRGAEGKTPFVAAVETTDDDKPHKIILRRVKAFSKAELRKLAG
AALESGAAVVSDTHSAIVTGSGAKAAKTPAFKWVNTALGNIKAAIVGTYRAVGEKHVPRYLAEFEYRFNRRYDLANMIPRLAVIATATAPMPYRLLKLAD
FQA
Blast result :
Comments
ISMetp1 is 69% aa similar to ISHsp4.
References
1] ISfinder annotation (2017)
2] Shinoda,R. and Bao,Z. (2016) Direct GenBank submission.
2] Shinoda,R. and Bao,Z. (2016) Direct GenBank submission.