ISMeba1
- Family IS1595
- Group IS1016
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
MFRJ01000090 | ND | Candidatus Melainabacteria | Candidatus Melainabacteria bacterium GWA2_34_9 |
DNA section
IS Length : 750 bp
Ends
IR Length : 14
IRL : GGCTCTAGACTAGCGTGCTTAACATGCTAGGATGGAACAATGAATAATAA
IRR : GGCTCTAGACTAGCACTTTTCTTGTAAAACTTTTAAATTCTTTTTATAGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAAATAAAAA | AATGAAT | ATTAGTAATC | 7 |
DNA sequence
GGCTCTAGACTAGCGTGCTTAACATGCTAGGATGGAACAATGAATAATAATAAGCCTTTAAGTGATTACAAAATTAAAAAAATTATAGAAGCTTTTTGTG
CAGATATTTCTGCTACGCAAGCTTCTATTTTGTTAAAAATTAATCGAAATAGTATAAATAAATACTACAACTTGTTTCGAGAATTAATTTTTGAACATCA
AATGATTGAAAAGGAGCAATTCTGCGGAGTTATAGAAGTTGATGAAAGTTACTTCGGAACAAGAAGAATAAGAGGTTTTGCAGTAAAATTAAAGCGTGGG
CGTGGAACTTTAAAACAGCCAGTATTTGGTATATTTGAAAGAAATGGCAGAGTTTATACAGAAATAGTACCTGATTGTAAGAAAAAAACTTTACAGGCAA
TTATTCACAAAAAAATAGATGTTGAAAGTGTTATCAATTCAGATGGGTGGCGTGGTTATACAGGGCTTGTTGATGTTGGTTACGGTAAACATTTCAGAGT
TAACCATGGAAAACATGAATTTTCAAAGAAGAATGGAGTGCATATCAATGGAATTGAGAGTTTTTGGAGTTTTACTAAAAGAAGATTGACTAAATTTAAT
GGAGTAAAAGCAACATTTCTGCTACACTTGAAAGAAAGTGAATGGAGATGGAGCAAAAATCACGAAATTATGATTAAAGAATTAATTTCTATTTACAAAA
ACTATAAAAAGAATTTAAAAGTTTTACAAGAAAAGTGCTAGTCTAGAGCC
CAGATATTTCTGCTACGCAAGCTTCTATTTTGTTAAAAATTAATCGAAATAGTATAAATAAATACTACAACTTGTTTCGAGAATTAATTTTTGAACATCA
AATGATTGAAAAGGAGCAATTCTGCGGAGTTATAGAAGTTGATGAAAGTTACTTCGGAACAAGAAGAATAAGAGGTTTTGCAGTAAAATTAAAGCGTGGG
CGTGGAACTTTAAAACAGCCAGTATTTGGTATATTTGAAAGAAATGGCAGAGTTTATACAGAAATAGTACCTGATTGTAAGAAAAAAACTTTACAGGCAA
TTATTCACAAAAAAATAGATGTTGAAAGTGTTATCAATTCAGATGGGTGGCGTGGTTATACAGGGCTTGTTGATGTTGGTTACGGTAAACATTTCAGAGT
TAACCATGGAAAACATGAATTTTCAAAGAAGAATGGAGTGCATATCAATGGAATTGAGAGTTTTTGGAGTTTTACTAAAAGAAGATTGACTAAATTTAAT
GGAGTAAAAGCAACATTTCTGCTACACTTGAAAGAAAGTGAATGGAGATGGAGCAAAAATCACGAAATTATGATTAAAGAATTAATTTCTATTTACAAAA
ACTATAAAAAGAATTTAAAAGTTTTACAAGAAAAGTGCTAGTCTAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
702 bp | 233 aa | 40 | 741 | + | No |
Chemistry : DDE
ORF sequence :
MNNNKPLSDYKIKKIIEAFCADISATQASILLKINRNSINKYYNLFRELIFEHQMIEKEQFCGVIEVDESYFGTRRIRGFAVKLKRGRGTLKQPVFGIFE
RNGRVYTEIVPDCKKKTLQAIIHKKIDVESVINSDGWRGYTGLVDVGYGKHFRVNHGKHEFSKKNGVHINGIESFWSFTKRRLTKFNGVKATFLLHLKES
EWRWSKNHEIMIKELISIYKNYKKNLKVLQEKC
RNGRVYTEIVPDCKKKTLQAIIHKKIDVESVINSDGWRGYTGLVDVGYGKHFRVNHGKHEFSKKNGVHINGIESFWSFTKRRLTKFNGVKATFLLHLKES
EWRWSKNHEIMIKELISIYKNYKKNLKVLQEKC
Blast result :
Comments
ISMeba1 is 77% aa similar to ISAcra1.
References
1] ISfinder annotation (2017)
2] Anantharaman,K., Brown,C.T., Hug,L.A., Sharon,I., Castelle,C.J., Probst,A.J., Thomas,B.C., Singh,A., Wilkins,M.J., Karaoz,U., Brodie,E.L., Williams,K.H., Hubbard,S.S. and Banfield,J.F. (2016)Nat Commun 7, 13219.
2] Anantharaman,K., Brown,C.T., Hug,L.A., Sharon,I., Castelle,C.J., Probst,A.J., Thomas,B.C., Singh,A., Wilkins,M.J., Karaoz,U., Brodie,E.L., Williams,K.H., Hubbard,S.S. and Banfield,J.F. (2016)Nat Commun 7, 13219.