ISMeba1

  • Family IS1595
  • Group IS1016
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
MFRJ01000090 ND Candidatus Melainabacteria
Candidatus Melainabacteria bacterium GWA2_34_9
DNA section
IS Length : 750 bp

Ends


IR Length : 14

IRL : GGCTCTAGACTAGCGTGCTTAACATGCTAGGATGGAACAATGAATAATAA
IRR : GGCTCTAGACTAGCACTTTTCTTGTAAAACTTTTAAATTCTTTTTATAGT

Insertion site


Left flankDirect repeatRight flankDR Length
AAAATAAAAAAATGAATATTAGTAATC7

DNA sequence

GGCTCTAGACTAGCGTGCTTAACATGCTAGGATGGAACAATGAATAATAATAAGCCTTTAAGTGATTACAAAATTAAAAAAATTATAGAAGCTTTTTGTG
CAGATATTTCTGCTACGCAAGCTTCTATTTTGTTAAAAATTAATCGAAATAGTATAAATAAATACTACAACTTGTTTCGAGAATTAATTTTTGAACATCA
AATGATTGAAAAGGAGCAATTCTGCGGAGTTATAGAAGTTGATGAAAGTTACTTCGGAACAAGAAGAATAAGAGGTTTTGCAGTAAAATTAAAGCGTGGG
CGTGGAACTTTAAAACAGCCAGTATTTGGTATATTTGAAAGAAATGGCAGAGTTTATACAGAAATAGTACCTGATTGTAAGAAAAAAACTTTACAGGCAA
TTATTCACAAAAAAATAGATGTTGAAAGTGTTATCAATTCAGATGGGTGGCGTGGTTATACAGGGCTTGTTGATGTTGGTTACGGTAAACATTTCAGAGT
TAACCATGGAAAACATGAATTTTCAAAGAAGAATGGAGTGCATATCAATGGAATTGAGAGTTTTTGGAGTTTTACTAAAAGAAGATTGACTAAATTTAAT
GGAGTAAAAGCAACATTTCTGCTACACTTGAAAGAAAGTGAATGGAGATGGAGCAAAAATCACGAAATTATGATTAAAGAATTAATTTCTATTTACAAAA
ACTATAAAAAGAATTTAAAAGTTTTACAAGAAAAGTGCTAGTCTAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
702 bp233 aa40741+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNNNKPLSDYKIKKIIEAFCADISATQASILLKINRNSINKYYNLFRELIFEHQMIEKEQFCGVIEVDESYFGTRRIRGFAVKLKRGRGTLKQPVFGIFE
RNGRVYTEIVPDCKKKTLQAIIHKKIDVESVINSDGWRGYTGLVDVGYGKHFRVNHGKHEFSKKNGVHINGIESFWSFTKRRLTKFNGVKATFLLHLKES
EWRWSKNHEIMIKELISIYKNYKKNLKVLQEKC

 

Blast result :
Comments
ISMeba1 is 77% aa similar to ISAcra1.
References
1] ISfinder annotation (2017)
2] Anantharaman,K., Brown,C.T., Hug,L.A., Sharon,I., Castelle,C.J., Probst,A.J., Thomas,B.C., Singh,A., Wilkins,M.J., Karaoz,U., Brodie,E.L., Williams,K.H., Hubbard,S.S. and Banfield,J.F. (2016)Nat Commun 7, 13219.