ISMemo1
- Family IS1595
- Group IS1016
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AYLO01000051 | ND | Methyloglobulus morosus | Methyloglobulus morosus KoM1 |
DNA section
IS Length : 729 bp
Ends
IR Length : 20
IRL : GGCTCTAGACTATCAGGAGACCCAATGATAGCCTAGAAAGATGTTAAGAA
IRR : GGCTCTAGACTATCAGGAGAGATTAAAATTTCTGACGAGTTGCCATAATT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTACAGCTAA | TTAATAA | TTATATGTTG | 7 |
DNA sequence
GGCTCTAGACTATCAGGAGACCCAATGATAGCCTAGAAAGATGTTAAGAAACAGCAAACTAAGTGATTATTGCATCAAAAAATAATTTCTTGTTTTTGTA
TCGATATCCCGGCCAGCAAAACCGCGTTGTTGCTGAGGTTGAACCGCAATACGATCAACCGTTGGTATGGCCTGTTTAGGCGGGCGATTTATTGCCATCA
AGCCGCCTTAAAGGACAAATTGGTCGGGCGGGTTGAGGTCGACGAAAGTTATTTCGGTGCCAAGCGGCAGCGGGGCCGCCAAGGCAAGCTCAAGCGTGGC
AGGGGCACTTTAAAGCAACCGGTATTTGGCGTATTTGAGCGCGAAGGCCGCGTGTACACGGAGATTGTCCCTGACTGTAAGCGGTTGACCTTACAGGCCG
TTATCCTCGGCAAGGTGTCGATTGAAAGCGTCATCTATAGTGATGGCTGGCGGGGTTACAACGGCTTGGTGGATGTGGGTTACTCCCGGCATTTTCGGGT
CAACCATGGCGTTCACGAATTTGCTCGTGATGGTCATTGCCATATTAACGGCATCGAATCATTCTGGAGCTTTACCAAACGAAGGCTTGCCAAGTTCAAT
GGCGTCTCGGTAAACTTCGGACTCCACCTCAAAGAATCGGAGTGGCGATGGAAAAAACATCCTGACGAATTGGCTACTCAATTATGGCAACTCGTCAGAA
ATTTTAATCTCTCCTGATAGTCTAGAGCC
TCGATATCCCGGCCAGCAAAACCGCGTTGTTGCTGAGGTTGAACCGCAATACGATCAACCGTTGGTATGGCCTGTTTAGGCGGGCGATTTATTGCCATCA
AGCCGCCTTAAAGGACAAATTGGTCGGGCGGGTTGAGGTCGACGAAAGTTATTTCGGTGCCAAGCGGCAGCGGGGCCGCCAAGGCAAGCTCAAGCGTGGC
AGGGGCACTTTAAAGCAACCGGTATTTGGCGTATTTGAGCGCGAAGGCCGCGTGTACACGGAGATTGTCCCTGACTGTAAGCGGTTGACCTTACAGGCCG
TTATCCTCGGCAAGGTGTCGATTGAAAGCGTCATCTATAGTGATGGCTGGCGGGGTTACAACGGCTTGGTGGATGTGGGTTACTCCCGGCATTTTCGGGT
CAACCATGGCGTTCACGAATTTGCTCGTGATGGTCATTGCCATATTAACGGCATCGAATCATTCTGGAGCTTTACCAAACGAAGGCTTGCCAAGTTCAAT
GGCGTCTCGGTAAACTTCGGACTCCACCTCAAAGAATCGGAGTGGCGATGGAAAAAACATCCTGACGAATTGGCTACTCAATTATGGCAACTCGTCAGAA
ATTTTAATCTCTCCTGATAGTCTAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
648 bp | 215 aa | 70 | 717 | + | No |
Chemistry : DDE
ORF sequence :
MHQKIISCFCIDIPASKTALLLRLNRNTINRWYGLFRRAIYCHQAALKDKLVGRVEVDESYFGAKRQRGRQGKLKRGRGTLKQPVFGVFEREGRVYTEIV
PDCKRLTLQAVILGKVSIESVIYSDGWRGYNGLVDVGYSRHFRVNHGVHEFARDGHCHINGIESFWSFTKRRLAKFNGVSVNFGLHLKESEWRWKKHPDE
LATQLWQLVRNFNLS
PDCKRLTLQAVILGKVSIESVIYSDGWRGYNGLVDVGYSRHFRVNHGVHEFARDGHCHINGIESFWSFTKRRLAKFNGVSVNFGLHLKESEWRWKKHPDE
LATQLWQLVRNFNLS
Blast result :
Comments
ISMemo1 is 86% aa similar to ISAcra1.
References
1] ISfinder annotation (2017)
2] Poehlein,A., Deutzmann,J.S., Daniel,R. and Simeonova,D.D. (2013) Genome Announc 1 (6), e01078-13.
2] Poehlein,A., Deutzmann,J.S., Daniel,R. and Simeonova,D.D. (2013) Genome Announc 1 (6), e01078-13.