ISOdsp1
- Family IS1595
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP002544 | ND | Odoribacter splanchnicus | Odoribacter splanchnicus DSM 20712 |
DNA section
IS Length : 1100 bp
Ends
IR Length : 22/24
IRL : AATGATTATCCGTATAATGTCCGTTAATTTATTTAACATCATACGAATGT
IRR : AATGATTATCCGCATGATGTCCGTCTATAAATTTTCGACCTAAAGTCGGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTGGATGGAAAA | ATATTTT | ATGATTAAAACAG | 7 |
TCTATGCTCATT | TAAAGAA | TTATGAAGAGTTC | 7 |
TGCATATATAAT | TCAATTA | TCTTAAAAATGGT | 7 |
AGTCTAGCATTA | AAAATAA | TTTCCTTCCCCAA | 7 |
AACACGAGGGAA | AAATTAT | TCAATTATCTGAA | 7 |
DNA sequence
AATGATTATCCGTATAATGTCCGTTAATTTATTTAACATCATACGAATGTTTTAATGATAAATATTTATACAAAAATATTTGCGTATTTTGCTGAAATTC
AGTATATTCATAATGTTGTTTTAATCCGAAATATCATTATGAACATACTAAATTTCATGCAACGGTTCCCCGATGAAGCATCTTGCATTGCTTATCTGAA
GGAACAGAGGGAACAATCAGGTATTGTCTGCAAACATTGTGGCTGTACGGAACATCGCTGGGATGCCAATAAACTTGTTTTTGAGTGCAAGCACTGCCAT
CATAGGCAATCATTACGCTCCGGAACTGTTATGGAACATAGCAAGCTGCCTTTCCGTTACTGGATAGCAGCCATGTTCCTGCTAACAAGCACTAAGAAAT
CCTTTTCAACAGAGGAAATCCGTCGCCAGTTAGGTCACAAACGTTATCAACCCATCTGGGAGATGGTCTGCAAGCTTCGGGATGTCATGGGAAAGCGTGA
TGAACGCTACCGCCTGACCGGTTCTGTAGAACTGGACGAAGGTTTCTTCACTGTGGAGCTTCAAGAAGAAGAAAAGGACAAACCGTTGAAAAGAGGTCGT
GGCAGTCAAAGGAAAGCCAGGATTCTGGTCATGGTTGAAAGCTCCTATTCTACGAAAACTCCCAAGAGAGGAAGACCCAATAAAGCAGTCGGACACCTCA
AAATGCAGGTCATATCAGATTTGGGGTCGAAGACAATTACCAAGGTTGTCAAAGAGCAACTGGAGCCGTCAGTAGAACTGACTACAGACGATTCCACATC
ATATATCAAGTTTGATAAACTCGTCAAGAGCCATAAGGCGGTCACTTCCGGCAAAGAAGCGGTTAAAGTCTTCCTGCCCTGGGTGCATATTGCAATAAGC
AATGCCAAAAGGCTTCTGTTGGACGTTCATCATAAGCTTAAAAACGAATACTTACAATACTATCTGAATGAGTTCTGCTATAAATTCAACAGACGCTATC
TCGATGAAAAACTATTTGATAGACTCGCTTTCACAGCTATCAACTATAACACCGACTTTAGGTCGAAAATTTATAGACGGACATCATGCGGATAATCATT
AGTATATTCATAATGTTGTTTTAATCCGAAATATCATTATGAACATACTAAATTTCATGCAACGGTTCCCCGATGAAGCATCTTGCATTGCTTATCTGAA
GGAACAGAGGGAACAATCAGGTATTGTCTGCAAACATTGTGGCTGTACGGAACATCGCTGGGATGCCAATAAACTTGTTTTTGAGTGCAAGCACTGCCAT
CATAGGCAATCATTACGCTCCGGAACTGTTATGGAACATAGCAAGCTGCCTTTCCGTTACTGGATAGCAGCCATGTTCCTGCTAACAAGCACTAAGAAAT
CCTTTTCAACAGAGGAAATCCGTCGCCAGTTAGGTCACAAACGTTATCAACCCATCTGGGAGATGGTCTGCAAGCTTCGGGATGTCATGGGAAAGCGTGA
TGAACGCTACCGCCTGACCGGTTCTGTAGAACTGGACGAAGGTTTCTTCACTGTGGAGCTTCAAGAAGAAGAAAAGGACAAACCGTTGAAAAGAGGTCGT
GGCAGTCAAAGGAAAGCCAGGATTCTGGTCATGGTTGAAAGCTCCTATTCTACGAAAACTCCCAAGAGAGGAAGACCCAATAAAGCAGTCGGACACCTCA
AAATGCAGGTCATATCAGATTTGGGGTCGAAGACAATTACCAAGGTTGTCAAAGAGCAACTGGAGCCGTCAGTAGAACTGACTACAGACGATTCCACATC
ATATATCAAGTTTGATAAACTCGTCAAGAGCCATAAGGCGGTCACTTCCGGCAAAGAAGCGGTTAAAGTCTTCCTGCCCTGGGTGCATATTGCAATAAGC
AATGCCAAAAGGCTTCTGTTGGACGTTCATCATAAGCTTAAAAACGAATACTTACAATACTATCTGAATGAGTTCTGCTATAAATTCAACAGACGCTATC
TCGATGAAAAACTATTTGATAGACTCGCTTTCACAGCTATCAACTATAACACCGACTTTAGGTCGAAAATTTATAGACGGACATCATGCGGATAATCATT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
957 bp | 318 aa | 139 | 1095 | + | No |
Chemistry : DDE
ORF sequence :
MNILNFMQRFPDEASCIAYLKEQREQSGIVCKHCGCTEHRWDANKLVFECKHCHHRQSLRSGTVMEHSKLPFRYWIAAMFLLTSTKKSFSTEEIRRQLGH
KRYQPIWEMVCKLRDVMGKRDERYRLTGSVELDEGFFTVELQEEEKDKPLKRGRGSQRKARILVMVESSYSTKTPKRGRPNKAVGHLKMQVISDLGSKTI
TKVVKEQLEPSVELTTDDSTSYIKFDKLVKSHKAVTSGKEAVKVFLPWVHIAISNAKRLLLDVHHKLKNEYLQYYLNEFCYKFNRRYLDEKLFDRLAFTA
INYNTDFRSKIYRRTSCG
KRYQPIWEMVCKLRDVMGKRDERYRLTGSVELDEGFFTVELQEEEKDKPLKRGRGSQRKARILVMVESSYSTKTPKRGRPNKAVGHLKMQVISDLGSKTI
TKVVKEQLEPSVELTTDDSTSYIKFDKLVKSHKAVTSGKEAVKVFLPWVHIAISNAKRLLLDVHHKLKNEYLQYYLNEFCYKFNRRYLDEKLFDRLAFTA
INYNTDFRSKIYRRTSCG
Blast result :
Comments
ISOdsp1 is 69% aa similar to ISTfo1.
References
1] ISfinder annotation (2017)
2] Goker,M., Gronow,S., Zeytun,A., Nolan,M., Lucas,S., Lapidus,A., Hammon,N., Deshpande,S., Cheng,J.F., Pitluck,S., Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Ovchinikova,G., Pati,A., Tapia,R., Han,C., Goodwin,L., Chen,A., Palaniappan,K., Land,M., Hauser,L., Jeffries,C.D., Brambilla,E.M., Rohde,M., Detter,J.C., Woyke,T., Bristow,J., Markowitz,V., Hugenholtz,P., Eisen,J.A., Kyrpides,N.C. and Klenk,H.P. (2011) Stand Genomic Sci 4 (2), 200-209.
2] Goker,M., Gronow,S., Zeytun,A., Nolan,M., Lucas,S., Lapidus,A., Hammon,N., Deshpande,S., Cheng,J.F., Pitluck,S., Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Ovchinikova,G., Pati,A., Tapia,R., Han,C., Goodwin,L., Chen,A., Palaniappan,K., Land,M., Hauser,L., Jeffries,C.D., Brambilla,E.M., Rohde,M., Detter,J.C., Woyke,T., Bristow,J., Markowitz,V., Hugenholtz,P., Eisen,J.A., Kyrpides,N.C. and Klenk,H.P. (2011) Stand Genomic Sci 4 (2), 200-209.