ISMmet2
- Family IS1595
- Group ISPna2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LUUH01000030 | ND | Methylomonas methanica | Methylomonas methanica R-45371 |
DNA section
IS Length : 1040 bp
Ends
IR Length : 22/24
IRL : AGCTCTGTTAGCGTTAATAGTTGAAATTGAACGATCGCTTTTTTGGCTTG
IRR : GGCTCTGTTAGCGTTAACAGTTGATTTGCCCAACGGCGGCGAGCATCCAG
Comments : There is a mismatch on the first position.
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GAAAGTGGCC | TTATTTAA | AGGGAGTTTG | 8 |
DNA sequence
AGCTCTGTTAGCGTTAATAGTTGAAATTGAACGATCGCTTTTTTGGCTTGGTCTCAGCCGACAAGGAGGTAGCGGTATGAACACAAAAAGCTATCGGGAC
TGGCTAAAAGGACTCGATGAACTGACGAGTCATCAGCAACAAAGAGTATTGAGCCGGCTGAACAAGATGGTCTCGGGAGACACGGTTGCCGCCAGACTAG
AACAAGCGGCGCCTCAAGGCTGTCCGCAATGCCAAAGTCACCGACTGGCTCGCTGGGGCCGGCAAGCCGGTTTGCAACGCTACCGTTGTCGCGACTGCGG
CAAGTGTTGCAATGCCTTAACGGGAACACCCTTGGCTCGACTTCGACATAAGGACTGTTGGTTGACTTATAGCCAAGCCATGATTGAAGGGCTGACGGTG
CGAAATGCAGCCTATCGTTGCGGGATCGACAAAACCACGAGCTTTCGCTGGCGACACCGTTTTCTCACCGATGTCGTTGAGTTGAAGGCGACCGGCTTGA
CAGGTATTGTGGAAGCGGACGAAACCTATTTCCCTCTGTCATTCAAAGGCTCACGTCACTTGCCCAGGCCAGCGCATCACCGAGGTCATGACATTCACCA
GCGCGGCACCGGCGAGGATCAAGTACCGGTATTGGTGTTACGCGATCGTCATGGGGCCACGACCGATTTCAAACTGACCCTGGCTTGTCAACGCGAAGAA
GCGCCGATTCTGAGCCAAGTCATCCGCCCAGATTCCATACTCTGTACCGATGGTGGCGCCAGTCTCAAAGGGGCTGCACGCCAAGCCGGTATCGCTCATC
GCGCTTTGAATCTGTCGGCGGGGGTACGGGTGTTGGCTGGGGTTTACCACATTCAAAACGTCAACGCCTACGACAGTCGGCTGAAAAATTGGATGCGGCA
ATTTCATGGGGTCGCCACCAAATATCTGGAAAATTATCTCGGCTGGCGTCGAGGATTGGAGCAATGGGGTGAGCTCGCTACACCTCAAACCTGGATGCTC
GCCGCCGTTGGGCAAATCAACTGTTAACGCTAACAGAGCC
TGGCTAAAAGGACTCGATGAACTGACGAGTCATCAGCAACAAAGAGTATTGAGCCGGCTGAACAAGATGGTCTCGGGAGACACGGTTGCCGCCAGACTAG
AACAAGCGGCGCCTCAAGGCTGTCCGCAATGCCAAAGTCACCGACTGGCTCGCTGGGGCCGGCAAGCCGGTTTGCAACGCTACCGTTGTCGCGACTGCGG
CAAGTGTTGCAATGCCTTAACGGGAACACCCTTGGCTCGACTTCGACATAAGGACTGTTGGTTGACTTATAGCCAAGCCATGATTGAAGGGCTGACGGTG
CGAAATGCAGCCTATCGTTGCGGGATCGACAAAACCACGAGCTTTCGCTGGCGACACCGTTTTCTCACCGATGTCGTTGAGTTGAAGGCGACCGGCTTGA
CAGGTATTGTGGAAGCGGACGAAACCTATTTCCCTCTGTCATTCAAAGGCTCACGTCACTTGCCCAGGCCAGCGCATCACCGAGGTCATGACATTCACCA
GCGCGGCACCGGCGAGGATCAAGTACCGGTATTGGTGTTACGCGATCGTCATGGGGCCACGACCGATTTCAAACTGACCCTGGCTTGTCAACGCGAAGAA
GCGCCGATTCTGAGCCAAGTCATCCGCCCAGATTCCATACTCTGTACCGATGGTGGCGCCAGTCTCAAAGGGGCTGCACGCCAAGCCGGTATCGCTCATC
GCGCTTTGAATCTGTCGGCGGGGGTACGGGTGTTGGCTGGGGTTTACCACATTCAAAACGTCAACGCCTACGACAGTCGGCTGAAAAATTGGATGCGGCA
ATTTCATGGGGTCGCCACCAAATATCTGGAAAATTATCTCGGCTGGCGTCGAGGATTGGAGCAATGGGGTGAGCTCGCTACACCTCAAACCTGGATGCTC
GCCGCCGTTGGGCAAATCAACTGTTAACGCTAACAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
951 bp | 316 aa | 77 | 1027 | + | No |
Chemistry : DDE
ORF sequence :
MNTKSYRDWLKGLDELTSHQQQRVLSRLNKMVSGDTVAARLEQAAPQGCPQCQSHRLARWGRQAGLQRYRCRDCGKCCNALTGTPLARLRHKDCWLTYSQ
AMIEGLTVRNAAYRCGIDKTTSFRWRHRFLTDVVELKATGLTGIVEADETYFPLSFKGSRHLPRPAHHRGHDIHQRGTGEDQVPVLVLRDRHGATTDFKL
TLACQREEAPILSQVIRPDSILCTDGGASLKGAARQAGIAHRALNLSAGVRVLAGVYHIQNVNAYDSRLKNWMRQFHGVATKYLENYLGWRRGLEQWGEL
ATPQTWMLAAVGQINC
AMIEGLTVRNAAYRCGIDKTTSFRWRHRFLTDVVELKATGLTGIVEADETYFPLSFKGSRHLPRPAHHRGHDIHQRGTGEDQVPVLVLRDRHGATTDFKL
TLACQREEAPILSQVIRPDSILCTDGGASLKGAARQAGIAHRALNLSAGVRVLAGVYHIQNVNAYDSRLKNWMRQFHGVATKYLENYLGWRRGLEQWGEL
ATPQTWMLAAVGQINC
Blast result :
Comments
ISMmet2 is 68% aa similar to ISNe7.
References
1] ISfinder annotation (2016)
2] Heylen,K., De Vos,P. and Vekeman,B. (2016) Direct GenBank submission.
2] Heylen,K., De Vos,P. and Vekeman,B. (2016) Direct GenBank submission.