ISMetu1
- Family IS1595
- Group ISPna2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
JH109153 | ND | Methylobacter tundripaludum | Methylobacter tundripaludum SV96 |
DNA section
IS Length : 1051 bp
Ends
IR Length : 22/25
IRL : GGCTATGTCATCGTTAATTATGGAATTTTTTATTTCTTCTTCATAAAATG
IRR : GGCTATGTCACCGTTAAATATTGAAAATTCCCCAGAGCAGCATTGAGTAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGCTATATCA | TTAATTGT | CGCTGGAGTG | 8 |
DNA sequence
GGCTATGTCATCGTTAATTATGGAATTTTTTATTTCTTCTTCATAAAATGGTTTTTGTGGATTTTCAATTGGAGATCATCATGAAAAGCGTCGAATTTAT
GCAATTAATTACTGCAGTCCATGAATTAGATCATCATCAGCGCAAATTGTTGAGCGCTGCATTAAACGAACTATCCGACGAATCCAAAGTCCTCGAATTG
ATTGAGGTCTGCTTTGATGCTAGAAGTGCGTGCCCGCATTGTGCCAGTGTCGAGTTATACCGTCACGGATTGGTCAGCGGGTTGCAACGTTATTATTGTA
AAAGCTGCCACAAAACTTTCAATGCCCTCACCGGCACGCCGCTGGCTCGTCTCCGAGAGAAGCCAAAATGGCTGAATTACCTCGCTGCGATGACACAATC
GCTGACCGTACGTCAGTCCGCTTCCGATAGCGGTGTTCATCGCAATACCAGTTTCCGCTGGCGACATCGTTTCTTGAGCTGGATTACCCAAGATCGCCCC
TCAACTCTTCACGGTATTACCGAAGCCGATGAAACGTATTTGTTGGAATCGGACAAAGGCAAGCGGAACCTTGAACGCAAGGCTCGCAAGCGTGGCGGTA
ACGCCACCAAACGAGGAATCTCTGACGAACAGGTCTGTGTGCTGGTTGCTCGTGACCGTTCCGGGCAAACGCTGGATTTCGTTACCGGCAAAGGACCGTT
AACCAAGCCCCTTCTTACCACCTCCCTAAAGCCAGTACTGGATGTGGCTGCCCTTTTGGTTAGCGATGCCAATCCCACCTATATGGCATTCTGTCATGCA
GAAGGCATCAGTCATGAAGTCGTTAACCTCAGTCAAGGCCAGCGGGTCAATGGCGCTTATCATGTGCAAAATGTCAACGCATATCACAGTCGGTTTAAAC
AGTGGCTGGAGCATTTTCACGGTGTGGCGACTAAATACTTACCAAACTACCTGGGCTGGAGACGGTCCTTTGAACAACACCGCCAGCTCGCACCAGAAAC
GCTACTCAATGCTGCTCTGGGGAATTTTCAATATTTAACGGTGACATAGCC
GCAATTAATTACTGCAGTCCATGAATTAGATCATCATCAGCGCAAATTGTTGAGCGCTGCATTAAACGAACTATCCGACGAATCCAAAGTCCTCGAATTG
ATTGAGGTCTGCTTTGATGCTAGAAGTGCGTGCCCGCATTGTGCCAGTGTCGAGTTATACCGTCACGGATTGGTCAGCGGGTTGCAACGTTATTATTGTA
AAAGCTGCCACAAAACTTTCAATGCCCTCACCGGCACGCCGCTGGCTCGTCTCCGAGAGAAGCCAAAATGGCTGAATTACCTCGCTGCGATGACACAATC
GCTGACCGTACGTCAGTCCGCTTCCGATAGCGGTGTTCATCGCAATACCAGTTTCCGCTGGCGACATCGTTTCTTGAGCTGGATTACCCAAGATCGCCCC
TCAACTCTTCACGGTATTACCGAAGCCGATGAAACGTATTTGTTGGAATCGGACAAAGGCAAGCGGAACCTTGAACGCAAGGCTCGCAAGCGTGGCGGTA
ACGCCACCAAACGAGGAATCTCTGACGAACAGGTCTGTGTGCTGGTTGCTCGTGACCGTTCCGGGCAAACGCTGGATTTCGTTACCGGCAAAGGACCGTT
AACCAAGCCCCTTCTTACCACCTCCCTAAAGCCAGTACTGGATGTGGCTGCCCTTTTGGTTAGCGATGCCAATCCCACCTATATGGCATTCTGTCATGCA
GAAGGCATCAGTCATGAAGTCGTTAACCTCAGTCAAGGCCAGCGGGTCAATGGCGCTTATCATGTGCAAAATGTCAACGCATATCACAGTCGGTTTAAAC
AGTGGCTGGAGCATTTTCACGGTGTGGCGACTAAATACTTACCAAACTACCTGGGCTGGAGACGGTCCTTTGAACAACACCGCCAGCTCGCACCAGAAAC
GCTACTCAATGCTGCTCTGGGGAATTTTCAATATTTAACGGTGACATAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1002 bp | 333 aa | 48 | 1049 | + | No |
Chemistry : DDE
ORF sequence :
MVFVDFQLEIIMKSVEFMQLITAVHELDHHQRKLLSAALNELSDESKVLELIEVCFDARSACPHCASVELYRHGLVSGLQRYYCKSCHKTFNALTGTPLA
RLREKPKWLNYLAAMTQSLTVRQSASDSGVHRNTSFRWRHRFLSWITQDRPSTLHGITEADETYLLESDKGKRNLERKARKRGGNATKRGISDEQVCVLV
ARDRSGQTLDFVTGKGPLTKPLLTTSLKPVLDVAALLVSDANPTYMAFCHAEGISHEVVNLSQGQRVNGAYHVQNVNAYHSRFKQWLEHFHGVATKYLPN
YLGWRRSFEQHRQLAPETLLNAALGNFQYLTVT
RLREKPKWLNYLAAMTQSLTVRQSASDSGVHRNTSFRWRHRFLSWITQDRPSTLHGITEADETYLLESDKGKRNLERKARKRGGNATKRGISDEQVCVLV
ARDRSGQTLDFVTGKGPLTKPLLTTSLKPVLDVAALLVSDANPTYMAFCHAEGISHEVVNLSQGQRVNGAYHVQNVNAYHSRFKQWLEHFHGVATKYLPN
YLGWRRSFEQHRQLAPETLLNAALGNFQYLTVT
Blast result :
Comments
ISMetu1 is 68% aa similar to ISPna2.
References
1] ISfinder annotation (2016)
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Held,B., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I., Klotz,M.G., Dispirito,A.A., Murrell,J.C., Dunfield,P., Kalyuzhnaya,M.G., Svenning,M., Trotsenko,Y.A., Stein,L.Y. and Woyke,T. (2011) Direct GenBank submission.
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Held,B., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I., Klotz,M.G., Dispirito,A.A., Murrell,J.C., Dunfield,P., Kalyuzhnaya,M.G., Svenning,M., Trotsenko,Y.A., Stein,L.Y. and Woyke,T. (2011) Direct GenBank submission.