ISOar1
- Family IS1595
- Group ISPna2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP003742 | ND | Octadecabacter arcticus | Octadecabacter arcticus 238 Octadecabacter arcticus 238 plasmid pOA238_118 |
DNA section
IS Length : 1044 bp
Ends
IR Length : 25
IRL : GGCTCAATTCGCATTAGCTATGCACTCCCCAATGATATAGAACAAAAAGT
IRR : GGCTCAATTCGCATTAGCTATGCACATGGTCTAACCGGCAGGATACCTGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACAAAGATCA | TAAAAAAT | ATATGATTCA | 8 |
ATGTTGGATAGT TTGAAAAT | TTGCAAAAT GGACGGCAATG | 0 | |
TCTATGGTCT | TACAACAA | TGACCGCCCG | 8 |
TTCAAATGGAGT | TATATCTT | TGGTGCCGCCGT | 8 |
DNA sequence
GGCTCAATTCGCATTAGCTATGCACTCCCCAATGATATAGAACAAAAAGTGAACGCAGGAGGCGCGCATGGACCATCACGACTATCTGGCCTGGCTATCT
GAGATTGATGATCTGTCCTCGTACCAGCGGATTGCAACGGTTCGGTTGCTGGCTGGTCAGCCGTCGCTGGAAGCCGTGATCGGACTGTTGGAGGAGCGGA
TCGGGACGGCACGAAACTGTCCGCATTGTGCGGCGGGCGGGGCTGTGATCCGAGGCCGCTCTAACGGGCTGAAGCGGTATTTTTGCAAGATCTGCAGCAA
AACCTTCAACGCCCTAACTGGGACGCCGTTAGCTCGGCTGCGACACAAAGATTGCTGGACAGAATTTGCTGGGTCATTAAGCGATGGCGACACGGTGAAG
ACCTCGGCGGCGCGCTGCGGGGTGGCCAGCAGCACGGCTTTTCGCTGGCGTCACCGCTTCCTGCGGGCTGTGACGGCTGGCGCGATCAAACTGCGCGGTA
TCGTCGAGGCCGATGAGACGTTTGTCTTGAGCAGTCGTAAAGGCGAACGGAACCTCGATCGCAAGGCCCGCAGGCGCGGCGGCAAGGCGTCCAAACGGGG
GGTATCGCATGAGCAAGTTCCAGTTTTGGTGGCCGCCGACCGCTCCGGCGCGACCGTCAGCGCCATATTGCCGGCGGTGTCTGCCGCTCATTTGCAAGCG
GTTTTGCAGCCAGTTCTTGACCAGGACGCCCTGCTGGTCACTGACGGCTGCACCAGTTATCCGCCCTGCGCCGCCGCGATGGGCATCAGCCATGAGGCGC
TCAACCAAACCGCTGGCGAGCGCGTCCGGGGAGAACTGCACATCCAGACCGTCAACAGCCGCCATGAGCGGCTCAAGTCCTTTCTTCGTCGCCATCGTGG
CGTCGCCACCAAGTATCTCGACAGCTATCTCAGATGGTTTCATCTCGCAGTGCTTCCAAGGCAGCCAACACCACGCGCAGTCCTCGCCGCAGCAGCAGGT
ATCCTGCCGGTTAGACCATGTGCATAGCTAATGCGAATTGAGCC
GAGATTGATGATCTGTCCTCGTACCAGCGGATTGCAACGGTTCGGTTGCTGGCTGGTCAGCCGTCGCTGGAAGCCGTGATCGGACTGTTGGAGGAGCGGA
TCGGGACGGCACGAAACTGTCCGCATTGTGCGGCGGGCGGGGCTGTGATCCGAGGCCGCTCTAACGGGCTGAAGCGGTATTTTTGCAAGATCTGCAGCAA
AACCTTCAACGCCCTAACTGGGACGCCGTTAGCTCGGCTGCGACACAAAGATTGCTGGACAGAATTTGCTGGGTCATTAAGCGATGGCGACACGGTGAAG
ACCTCGGCGGCGCGCTGCGGGGTGGCCAGCAGCACGGCTTTTCGCTGGCGTCACCGCTTCCTGCGGGCTGTGACGGCTGGCGCGATCAAACTGCGCGGTA
TCGTCGAGGCCGATGAGACGTTTGTCTTGAGCAGTCGTAAAGGCGAACGGAACCTCGATCGCAAGGCCCGCAGGCGCGGCGGCAAGGCGTCCAAACGGGG
GGTATCGCATGAGCAAGTTCCAGTTTTGGTGGCCGCCGACCGCTCCGGCGCGACCGTCAGCGCCATATTGCCGGCGGTGTCTGCCGCTCATTTGCAAGCG
GTTTTGCAGCCAGTTCTTGACCAGGACGCCCTGCTGGTCACTGACGGCTGCACCAGTTATCCGCCCTGCGCCGCCGCGATGGGCATCAGCCATGAGGCGC
TCAACCAAACCGCTGGCGAGCGCGTCCGGGGAGAACTGCACATCCAGACCGTCAACAGCCGCCATGAGCGGCTCAAGTCCTTTCTTCGTCGCCATCGTGG
CGTCGCCACCAAGTATCTCGACAGCTATCTCAGATGGTTTCATCTCGCAGTGCTTCCAAGGCAGCCAACACCACGCGCAGTCCTCGCCGCAGCAGCAGGT
ATCCTGCCGGTTAGACCATGTGCATAGCTAATGCGAATTGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
960 bp | 319 aa | 68 | 1027 | + | No |
Chemistry : DDE
ORF sequence :
MDHHDYLAWLSEIDDLSSYQRIATVRLLAGQPSLEAVIGLLEERIGTARNCPHCAAGGAVIRGRSNGLKRYFCKICSKTFNALTGTPLARLRHKDCWTEF
AGSLSDGDTVKTSAARCGVASSTAFRWRHRFLRAVTAGAIKLRGIVEADETFVLSSRKGERNLDRKARRRGGKASKRGVSHEQVPVLVAADRSGATVSAI
LPAVSAAHLQAVLQPVLDQDALLVTDGCTSYPPCAAAMGISHEALNQTAGERVRGELHIQTVNSRHERLKSFLRRHRGVATKYLDSYLRWFHLAVLPRQP
TPRAVLAAAAGILPVRPCA
AGSLSDGDTVKTSAARCGVASSTAFRWRHRFLRAVTAGAIKLRGIVEADETFVLSSRKGERNLDRKARRRGGKASKRGVSHEQVPVLVAADRSGATVSAI
LPAVSAAHLQAVLQPVLDQDALLVTDGCTSYPPCAAAMGISHEALNQTAGERVRGELHIQTVNSRHERLKSFLRRHRGVATKYLDSYLRWFHLAVLPRQP
TPRAVLAAAAGILPVRPCA
Blast result :
Comments
ISOar1 is 63% aa similar to ISRso22.
References
1] Isfinder annotation (2016)
2] Vollmers,J., Voget,S., Dietrich,S., Gollnow,K., Smits,M., Meyer,K., Brinkhoff,T., Simon,M. and Daniel,R. (2013) PLoS ONE 8 (5), E63422.
2] Vollmers,J., Voget,S., Dietrich,S., Gollnow,K., Smits,M., Meyer,K., Brinkhoff,T., Simon,M. and Daniel,R. (2013) PLoS ONE 8 (5), E63422.