ISMrsp7

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AXBW01000042 ND Marinobacter sp.
Marinobacter sp. C1S70
DNA section
IS Length : 1047 bp

Ends


IR Length : 28/29

IRL : GGCTATGTTGGTTTTCACTGTTGGTACGCTCTGATGATACTGTATATACT
IRR : GGCTGTGTTGGTTTTCACTGTTGGTACGCATTTATCGCAGCTCGAAGCCA

Insertion site


Left flankDirect repeatRight flankDR Length
CATTGACTGGATATACATACAGCTCTAT8

DNA sequence

GGCTATGTTGGTTTTCACTGTTGGTACGCTCTGATGATACTGTATATACTACTGTATAAACAGTCCTTCAGTGGAGCGTCTCATGAAGCGAGCCGAGATT
AGTGCCCTTGAAAAGAGCTTAGCCAGCCTCCCCGTTGACCTGAAGAAATATCTTGCCAATCAGCTCCTTGGCCAAATCAATGCTCAGGCTCACGCCTTGC
TCGAAACGGCCACCTCTCATCGCCTCTGTCCTCATTGCAACGGCGAACAATTCGTAAAGTGGGGCCATTCCGCGGGCCTGCAGCGCTACAGGTGCCAGAA
TTCGGCCTGTCGCAAAACCTTTAATGCCGTTTCACGAACACCGCTGGCCAGGCTGCGTCACCGTGATAAGTGGTTCGATTACTTGCGATGCATGCGAGAC
AGTCTGACCCTGCGGGTATCGGCAGCTCGGGTAGGCATTGATTTAAAGACGGCTTTTCGGTGGCGCCATCGGTTTTTACGCGCCAGCGCAGACGCTAACG
CGAATGCCCTTTCCGGCATTATTGAAGTGGATGAGACCTTCTTTGCTGAGTCCTGCAAGGGTAAGCGTAAACTCACGCATCGCAGTCCCAGAAAGCGGGG
CGGGCAAAGTAACCGAAAGTACAAACCTGATAAAATTCCGGTACTTATTGCAAGAGATCGCAACGGCCATATCAGCGACCTGGTAGACCCAGCATTGAAC
AAATCAACGGTTCATGAGTTCCTGACGCCAATTATCGATCTCGACTCGATCTTATGTTCAGACGGTCACAGCTGGTATAAGACCTTCTCGAAAGACCGGG
GAATTGCGCATCATCGACTGATCACGCTCGACAACCAAAGGGTGATCGGCAAGGAATACCACATCCAAAACGTCAACAGTTATATCAGTCGACTGAAGGG
ATGGATAGCGCGCTTTCATGGGGTGGGGACGGCTTATTTGCCGAGTTATCTCGCCTGGCGGCGACTGTTTGAAAGTGCACAGCCGTCTGAAGAGGCGTGG
CTTCGAGCTGCGATAAATGCGTACCAACAGTGAAAACCAACACAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
951 bp316 aa831033+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKRAEISALEKSLASLPVDLKKYLANQLLGQINAQAHALLETATSHRLCPHCNGEQFVKWGHSAGLQRYRCQNSACRKTFNAVSRTPLARLRHRDKWFDY
LRCMRDSLTLRVSAARVGIDLKTAFRWRHRFLRASADANANALSGIIEVDETFFAESCKGKRKLTHRSPRKRGGQSNRKYKPDKIPVLIARDRNGHISDL
VDPALNKSTVHEFLTPIIDLDSILCSDGHSWYKTFSKDRGIAHHRLITLDNQRVIGKEYHIQNVNSYISRLKGWIARFHGVGTAYLPSYLAWRRLFESAQ
PSEEAWLRAAINAYQQ

 

Blast result :
Comments
ISMrsp7 is 65% aa similar to ISPesp2.
References
1] ISfinder annotation (2016)
2] Overholt,W.A., Green,S.J., Marks,K.P., Venkatraman,R., Prakash,O. and Kostka,J.E. (2013) Genome Announc 1 (6), e01015-13.