ISMsa1
- Family IS1595
- Group ISPna2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP007152 | ND | Marinobacter salarius | Marinobacter salarius R9SW1 |
DNA section
IS Length : 1047 bp
Ends
IR Length : 25
IRL : GGCTATGTTGGTTTTTGCTGTTGGTACGCTCCAATAATACTGTATATACT
IRR : GGCTATGTTGGTTTTTGCTGTTGGTTTACATTTATCGCAGCACGCAGCCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CAAATTTTGCTTTAGACA | ATACTAATGGGTTCG | 0 |
DNA sequence
GGCTATGTTGGTTTTTGCTGTTGGTACGCTCCAATAATACTGTATATACTACTGTATAAACAGTTCCTTGGTGGAGCGCATCATGAAGCAGGCCGACATC
AATGCCCTTGAATCTACCTTAGCTCACCTTCCGGTTGATCTGAAAAAACACTTTTCCGATCAGCTCCTTGGGCAAATTAATGCTCAAGCTCACACCCTGA
TAGAAACTGCTAGCTCTCATCGTATTTGCCCTCATTGTGGCAATGACCACCTTGTAAAATGGGGACGCTCTGGTGGCTTGCAGCGGTATCGGTGCCAGAA
CGCATCCTGTCGAAAGACTTTTAATGCAGTCACACGAACCTCGTTGGCCAGATTGCGCTATCGCAATAAATGGTTTGACTACTTGCGGTGTATGCGAGAC
AGCCTGACCCTGCGGGTGTCGGCAGCCCGAGTAGGCATTGATTTAAAGACGGCTTTCCGGTGGCGTCATCGCTTTCTGCATGCCAGTGCAAACGCCAACG
CGAATGCTCTGTCCGGCATTATCGAAGTGGATGAAACCTTCTTTGCGGAGTCCTGCAAAGGCAAGCGCAACATCACGCATCGAAGTTCCAGGAAGCGTGG
CGGGCAAAGTAACAGGAAGTATAAACCTGATAAAATTCCAGTGGTTATTGCGCGAGATCGCAACGGTCATATCAGCGATCTGGTGGATCCCGAACTGAAT
AAATCAACGATCCACGCCTTCCTGGCACCGATCATTAACCGTGACTCGATTTTATGTTCAGACGGTCACAGTTGGTATAAAACCTTTTCTAAGGAACAAG
GCATTGCCCACCATCGGCTTATCACACTCAATAATCAACGAGTGATCGGCAAGGAATACCACATTCAAAACGTCAACAGTTATATCAGTCGATTGAAGGG
CTGGATGGCGCGTTTTCACGGGGTGGGGACGGCCTATCTGCCGAGTTATCTGGCATGGCGACGGTTGTTTGAAAGAGGACAACCCTCTGAAGAAGCTTGG
CTGCGTGCTGCGATAAATGTAAACCAACAGCAAAAACCAACATAGCC
AATGCCCTTGAATCTACCTTAGCTCACCTTCCGGTTGATCTGAAAAAACACTTTTCCGATCAGCTCCTTGGGCAAATTAATGCTCAAGCTCACACCCTGA
TAGAAACTGCTAGCTCTCATCGTATTTGCCCTCATTGTGGCAATGACCACCTTGTAAAATGGGGACGCTCTGGTGGCTTGCAGCGGTATCGGTGCCAGAA
CGCATCCTGTCGAAAGACTTTTAATGCAGTCACACGAACCTCGTTGGCCAGATTGCGCTATCGCAATAAATGGTTTGACTACTTGCGGTGTATGCGAGAC
AGCCTGACCCTGCGGGTGTCGGCAGCCCGAGTAGGCATTGATTTAAAGACGGCTTTCCGGTGGCGTCATCGCTTTCTGCATGCCAGTGCAAACGCCAACG
CGAATGCTCTGTCCGGCATTATCGAAGTGGATGAAACCTTCTTTGCGGAGTCCTGCAAAGGCAAGCGCAACATCACGCATCGAAGTTCCAGGAAGCGTGG
CGGGCAAAGTAACAGGAAGTATAAACCTGATAAAATTCCAGTGGTTATTGCGCGAGATCGCAACGGTCATATCAGCGATCTGGTGGATCCCGAACTGAAT
AAATCAACGATCCACGCCTTCCTGGCACCGATCATTAACCGTGACTCGATTTTATGTTCAGACGGTCACAGTTGGTATAAAACCTTTTCTAAGGAACAAG
GCATTGCCCACCATCGGCTTATCACACTCAATAATCAACGAGTGATCGGCAAGGAATACCACATTCAAAACGTCAACAGTTATATCAGTCGATTGAAGGG
CTGGATGGCGCGTTTTCACGGGGTGGGGACGGCCTATCTGCCGAGTTATCTGGCATGGCGACGGTTGTTTGAAAGAGGACAACCCTCTGAAGAAGCTTGG
CTGCGTGCTGCGATAAATGTAAACCAACAGCAAAAACCAACATAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
963 bp | 320 aa | 83 | 1045 | + | No |
Chemistry : DDE
ORF sequence :
MKQADINALESTLAHLPVDLKKHFSDQLLGQINAQAHTLIETASSHRICPHCGNDHLVKWGRSGGLQRYRCQNASCRKTFNAVTRTSLARLRYRNKWFDY
LRCMRDSLTLRVSAARVGIDLKTAFRWRHRFLHASANANANALSGIIEVDETFFAESCKGKRNITHRSSRKRGGQSNRKYKPDKIPVVIARDRNGHISDL
VDPELNKSTIHAFLAPIINRDSILCSDGHSWYKTFSKEQGIAHHRLITLNNQRVIGKEYHIQNVNSYISRLKGWMARFHGVGTAYLPSYLAWRRLFERGQ
PSEEAWLRAAINVNQQQKPT
LRCMRDSLTLRVSAARVGIDLKTAFRWRHRFLHASANANANALSGIIEVDETFFAESCKGKRNITHRSSRKRGGQSNRKYKPDKIPVVIARDRNGHISDL
VDPELNKSTIHAFLAPIINRDSILCSDGHSWYKTFSKEQGIAHHRLITLNNQRVIGKEYHIQNVNSYISRLKGWMARFHGVGTAYLPSYLAWRRLFERGQ
PSEEAWLRAAINVNQQQKPT
Blast result :
Comments
ISMsa1 is 65% aa similar to ISPesp2.
References
1] ISfinder annotation (2016)
2] Ivanova,E.P., Ng,H.J., Webb,H.K., Feng,G., Oshima,K., Hattori,M., Ohkuma,M., Sergeev,A.F., Mikhailov,V.V., Crawford,R.J. and Sawabe,T. (2014) Genome Announc 2 (3), e00442-14.
2] Ivanova,E.P., Ng,H.J., Webb,H.K., Feng,G., Oshima,K., Hattori,M., Ohkuma,M., Sergeev,A.F., Mikhailov,V.V., Crawford,R.J. and Sawabe,T. (2014) Genome Announc 2 (3), e00442-14.