ISMobv1

  • Family IS1595
  • Group IS1016
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP011374 ND Moraxella bovoculi
Moraxella bovoculi 58069
DNA section
IS Length : 711 bp

Ends


IR Length : 16/17

IRL : GGGGCTGAACTAGATCAGCAACTGTGATTACTAGTTTTATGAAGATAACC
IRR : GGGGCTGAACTAGATTAAATTAAACCCCACACCATTTTCTCAAAGTTTTT

Insertion site


Left flankDirect repeatRight flankDR Length
CCAAGCAATATAATTTAGAATAAAATAATGTGGTATCTTA0

DNA sequence

GGGGCTGAACTAGATCAGCAACTGTGATTACTAGTTTTATGAAGATAACCCATTGTAAACTAAGCAAAAAAGTCCAATTAAAACTACTAGAATTTTTCGT
ATTAGAAGTAACTGCTCGTTCATCGGCGGATTTGCTTAACATTCACGCCAATACAGCCATATTATTCTACCATAAAATCCATCTTGTGATAGAATATCAT
CTTGCCCTAGAAGCCAAAAAACTCTTTGATGGTGAAGTAGAGCTTGATGAGAGTTACTTTGGTGGTAGGCGTAAAGGCAAGCGTGGGCGTGGAGCTGGTG
GTAAAACAGCTGTGTTCGGTTTGTTAAAGCGTGATGGCAAGGTGTTTGTGGTGGTGGTCAAAGACACCACACAAAGCACCCTAATACCCATCATCAAAAG
TAAAATCAAACCAGACAGCATTGTCTACACTGACACCTATTCAAGCTACAATGCCTTGAATGTGAGTGATTTTAAGCATTTTCGTATCAACCACTCCAAA
GAGTTTGCTAAAAATCACAACCACATCAATGGCATAGAGAACTTTTGGCGACAAGCCAAAAGAGTGCTTGCTAAATACAACGGCATTGAAGCAAAAAACT
TTCATCTTTTTATCAAAGAATGCGAGTTTGGATTTAACTATGGGACACCATCACAAAAGCTAAAAACTTTGAGAAAATGGTGTGGGGTTTAATTTAATCT
AGTTCAGCCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
654 bp217 aa39692+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKITHCKLSKKVQLKLLEFFVLEVTARSSADLLNIHANTAILFYHKIHLVIEYHLALEAKKLFDGEVELDESYFGGRRKGKRGRGAGGKTAVFGLLKRDG
KVFVVVVKDTTQSTLIPIIKSKIKPDSIVYTDTYSSYNALNVSDFKHFRINHSKEFAKNHNHINGIENFWRQAKRVLAKYNGIEAKNFHLFIKECEFGFN
YGTPSQKLKTLRKWCGV

 

Blast result :
Comments
ISMobv1 is 88% aa similar to IS69.
References
1] Sally Partridge (2016) Direct submission.
2] Dickey,A., Clawson,M., Bono,J. and Loy,J.D. (2015) Direct GenBank submission.