ISMain1
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_JMLW01000041 | ND | Marinospirillum insulare | Marinospirillum insulare DSM 21763 |
DNA section
IS Length : 1053 bp
Ends
IR Length : 24
IRL : ACGGGGTATCCCCTTAGCTCCACAAATGACAAAATGCTCAAATGAGTACT
IRR : ACGGGGTATCCCCTTAGCTCCACAGCTCTTAATTTAAAGGTTTTACTCGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACCCTACTGT | ACAAACAA | CCAGCTATCT | 8 |
DNA sequence
ACGGGGTATCCCCTTAGCTCCACAAATGACAAAATGCTCAAATGAGTACTCAAAAAACCTACCCTATAGGTGGAAAAGACTATCCAACCACTTGGGTTCA
ATTCCTTGACTGGTTCCATTCTGAGCAAGCGTGCCGCAATTACTTAGAAACGCTCCGCTGGCCTGATGGACTTATTTGTCCTAAGTGTGGAGTGGTATCA
CAAGTGCAGCGAAGTAGTCGTGGTAGATTGATCTGTCCAACGTGCAGGCATCAAGCAACTGTAACTGCAGGCACTATTTTTGATAAAACTCGCACCGAAC
TTAGTGTTTGGTTCGCTGCCATTTGGTACATTACCAACCAGAAGCATGGTGTTAGCGCATTAAGTTTGCAGCGTGTACTTGGTCTTGGTAGCTATGAAAC
AGCATGGACTATGCTACACAGACTACGCCACGCAATGGTACGGCCGGATAGAGAATTGCTTCGTGGGGAGGTTGAAGTTGATGAAACCTACCTTGCACTC
TCTGACCGAACGGAGCTGTTAAGTACGAAGGGTCGGAAGAGCAACACCACCAAGCTACTGGTAGTTATAGCAGTCGAAATACTACACCCTAAAGGTTTTG
GAAGAGTTCGCATCCAACAGATTGAGCGTGGCAACCACGATAATCTAATGCCATTCATTAATGCCTCCATTGCTCCAGGATCGCTCATTCATACCGATGG
TTCTCCTGCTTACCGCCAAATCAAAGAAAATGGATACGAGCACCGACAAACAGTTCACCTTTGCTCAACCATACCAGCTCATGAGTCTATGCCAGGCGTT
CACCGAGTTGCATCACTTTTGCAACGTTGGATGATGGGTACACACCATGGTGCAGTACAGCCAGGACAACTGGATAATTACCTTAATGAATATGTATTTC
GATTTAATCGCCGCAAGTCTAAATCAAGGGGTTTACTGTTTTATCGCTTACTGCAGCAAGCCGTTGTGACAAAGCCTGTTACTTATCAAGATGTGGTGAA
ACAGCGAGTAAAACCTTTAAATTAAGAGCTGTGGAGCTAAGGGGATACCCCGT
ATTCCTTGACTGGTTCCATTCTGAGCAAGCGTGCCGCAATTACTTAGAAACGCTCCGCTGGCCTGATGGACTTATTTGTCCTAAGTGTGGAGTGGTATCA
CAAGTGCAGCGAAGTAGTCGTGGTAGATTGATCTGTCCAACGTGCAGGCATCAAGCAACTGTAACTGCAGGCACTATTTTTGATAAAACTCGCACCGAAC
TTAGTGTTTGGTTCGCTGCCATTTGGTACATTACCAACCAGAAGCATGGTGTTAGCGCATTAAGTTTGCAGCGTGTACTTGGTCTTGGTAGCTATGAAAC
AGCATGGACTATGCTACACAGACTACGCCACGCAATGGTACGGCCGGATAGAGAATTGCTTCGTGGGGAGGTTGAAGTTGATGAAACCTACCTTGCACTC
TCTGACCGAACGGAGCTGTTAAGTACGAAGGGTCGGAAGAGCAACACCACCAAGCTACTGGTAGTTATAGCAGTCGAAATACTACACCCTAAAGGTTTTG
GAAGAGTTCGCATCCAACAGATTGAGCGTGGCAACCACGATAATCTAATGCCATTCATTAATGCCTCCATTGCTCCAGGATCGCTCATTCATACCGATGG
TTCTCCTGCTTACCGCCAAATCAAAGAAAATGGATACGAGCACCGACAAACAGTTCACCTTTGCTCAACCATACCAGCTCATGAGTCTATGCCAGGCGTT
CACCGAGTTGCATCACTTTTGCAACGTTGGATGATGGGTACACACCATGGTGCAGTACAGCCAGGACAACTGGATAATTACCTTAATGAATATGTATTTC
GATTTAATCGCCGCAAGTCTAAATCAAGGGGTTTACTGTTTTATCGCTTACTGCAGCAAGCCGTTGTGACAAAGCCTGTTACTTATCAAGATGTGGTGAA
ACAGCGAGTAAAACCTTTAAATTAAGAGCTGTGGAGCTAAGGGGATACCCCGT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
984 bp | 327 aa | 42 | 1025 | + | No |
Chemistry : DDE
ORF sequence :
MSTQKTYPIGGKDYPTTWVQFLDWFHSEQACRNYLETLRWPDGLICPKCGVVSQVQRSSRGRLICPTCRHQATVTAGTIFDKTRTELSVWFAAIWYITNQ
KHGVSALSLQRVLGLGSYETAWTMLHRLRHAMVRPDRELLRGEVEVDETYLALSDRTELLSTKGRKSNTTKLLVVIAVEILHPKGFGRVRIQQIERGNHD
NLMPFINASIAPGSLIHTDGSPAYRQIKENGYEHRQTVHLCSTIPAHESMPGVHRVASLLQRWMMGTHHGAVQPGQLDNYLNEYVFRFNRRKSKSRGLLF
YRLLQQAVVTKPVTYQDVVKQRVKPLN
KHGVSALSLQRVLGLGSYETAWTMLHRLRHAMVRPDRELLRGEVEVDETYLALSDRTELLSTKGRKSNTTKLLVVIAVEILHPKGFGRVRIQQIERGNHD
NLMPFINASIAPGSLIHTDGSPAYRQIKENGYEHRQTVHLCSTIPAHESMPGVHRVASLLQRWMMGTHHGAVQPGQLDNYLNEYVFRFNRRKSKSRGLLF
YRLLQQAVVTKPVTYQDVVKQRVKPLN
Blast result :
Comments
ISMain1 is 89% aa similar to ISMrsp3.
References
1] Thomas Jové (2016) Direct submission.
2] Kyrpides,N., Huntemann,M., Han,J., Chen,A., Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N., Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N., Hua,S.X. and Woyke,T. (2014) Direct GenBank submission.
2] Kyrpides,N., Huntemann,M., Han,J., Chen,A., Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N., Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N., Hua,S.X. and Woyke,T. (2014) Direct GenBank submission.