ISOan10

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP003740 ND Octadecabacter antarcticus
Octadecabacter antarcticus
DNA section
IS Length : 1167 bp

Ends


IR Length : 28/36

IRL : AAGGCTTATCCCCTTTGCTCCGGCGGCACCTGATGTAGTGTGAAGCGGCT
IRR : AAGGCTTATCCCTTTTAGTCCGGTTGCCCCACATGTTGACGCGGCGCAGA

Insertion site


Left flankDirect repeatRight flankDR Length
CGATTCCAATCTAGGCCCAATTGAATTGC9
CATGAATAATATTATCTCATATGAACGCC9
CCCCATCATTACCAGCAATATTGTTGTCG9
ACAAAGCAATTGAGCGTTG/ATTTGGGCGAG9
ATGGCTTATTTTAAACGCAAGTCTTGAAA9
TGTTTCTAAATGGTAACCAATTGTAAACG9
ACAGGTCCATAATTGAAGCTTTTGCAGACGC9
CACCACTCAATCTCAAGCCGCTTGCGTTGGT9
TGTCTTAAAGATTGGAAACATATGAAACAAA9
GCCTATTCAAACTGCTGGCATTTGCTGCGTG9
CCCGGATCAATTGCTTGGCGCTTGAACTTCT9
TTTTCTGCAATTCCATTGCCAATGGGAAATT9
GTTGAACCATTATGCGATCAAATCTGCTGAA9
GCCCCTGCATCTACTGTGCATTTGCGCACA10
TCACCTACATACCCGTCAAGAATGGTTTTTT9
ATACGTCTAATCCCACATAATATGTCATGGT9
CGCTACCCAATTTCCTGCTATATGTGTCATC9
GCGGCCCCATTAGCAGCAAGCATGCAAATGC9
AGGCGGTCTTGATGTGAGCAATTGAAGGGGA9
AAGGACACAAACTGGCGGGATTTTACTCCGC9
TTGCAATCAAATGCGTCTGACCCAAGACGCTTGTGCCAGG0
CTCAACTCAAAGACCTAGTATAACCGACATTTGGGGTTCT0
GCATAATCAAAGGTTTAATGGGTATAATGATTGAAGACCA0

DNA sequence

AAGGCTTATCCCCTTTGCTCCGGCGGCACCTGATGTAGTGTGAAGCGGCTTGCCAATCTACAATGTTCTTGTATTGTTCTACCCATGCCAGCCAGATGGA
AAAACGACAAACCCATGTCCCGCCTGGCGTTCGACGCCAGGTTTTCTGATGAGGAAGCGTGTTCGCATTATCTGGCGGAACATCGTTGGCCTGAGGGCTT
TGTGTGTCCTTCCTGTGGCACCTGCAAGGGCTGGCCGTTAAAGCGAAATCGCGCGACTTGGGAATGTGCCGGTTGCGCACGGCAGACATCCGTGACGGCT
GGCACGGTGATGCACAGCAGCCATTTGCCGTTGCGAATTTGGTTTCTTGCCGCGCACATCATCACCAGCCATTCCAACGGCATGTCAGCGCTGCAACTTC
AGGCGCAACTTGGCCTTGGCAGCTACAAGACGGCGTGGCTCCTCTTGCAAAAGCTGCGGCGGTCGATGGTCAACCCTGACCGCAACCCCCTGAAAGACCT
TGTCGAGATCGATGAAACAGAGATTCCGTTCCGGTCCCGGCATGATCCCGAGGACCGGCCAAAGGGTGGGCGGAGCCCGGTCGGAAAGATGTTTGTCGTC
TGCGCCGTCGAGTTATCAAGAGACGGACATCCGCGCCGTATCAGGATGAAACACATTCCCGACGGCGCATCAAAGACGCTACACGGGTTCATTGGTCAGG
CTGTAGAGCCTGGCGCTCACGTCATCACGGATGGCTGGCTAGGTTACGAAAATCCCCCTGCAAACACGCATGAGGCGAAGGTCGTCAGCGGCAAGAAGGC
ACATGACATACTCCACTGGGTCCACCGCGTGTTCTCCAACCTAAAAACGTGGGCAAAAGGCGTCTTCCACGGCCTCAGAAAATGCCATCTGCAACGCTAT
CTCGACGAATTTGTGTTCCGCTGGAACCGACGGCGACACATGCGAAGCGCCTTCGACACGCTGCTGGGGATCGGTGTTGGTATTGGCCCAGCGACATATC
GTGATTTTGTTGAACAGCGCGCCTGAAGGCCCTTGTTCACGGCAAAAGCCACGCCCCATAAACCCACCAGATGTTACAAACTGATCCGATCCGCCTCTCA
AGCCACAAGGGCGAGGTTCTGCGCCGCGTCAACATGTGGGGCAACCGGACTAAAAGGGATAAGCCTT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
942 bp313 aa851026+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPARWKNDKPMSRLAFDARFSDEEACSHYLAEHRWPEGFVCPSCGTCKGWPLKRNRATWECAGCARQTSVTAGTVMHSSHLPLRIWFLAAHIITSHSNGM
SALQLQAQLGLGSYKTAWLLLQKLRRSMVNPDRNPLKDLVEIDETEIPFRSRHDPEDRPKGGRSPVGKMFVVCAVELSRDGHPRRIRMKHIPDGASKTLH
GFIGQAVEPGAHVITDGWLGYENPPANTHEAKVVSGKKAHDILHWVHRVFSNLKTWAKGVFHGLRKCHLQRYLDEFVFRWNRRRHMRSAFDTLLGIGVGI
GPATYRDFVEQRA

 

Blast result :
Comments
ISOan1 is 69% aa similar to ISApr2.
References
1] Thomas Jové (2016) Direct submission
2] Vollmers,J., Voget,S., Dietrich,S., Gollnow,K., Smits,M., Meyer,K., Brinkhoff,T., Simon,M. and Daniel,R. (2013) PLoS ONE 8 (5), E63422.