ISMmet1
- Family IS1595
- Group IS1595
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| LUUH01000092 | ND | Methylomonas methanica | Methylomonas methanica R-45371 |
DNA section
IS Length : 1033 bp
Ends
IR Length : 30/39
IRL : CCTGATTacccacgaccctcagcaacttcgaagtatcgcgcgagtccaac
IRR : cctgaTTACCCATAAGCCTCAGCCAATTTGAGCAATCGCCCCGGCATGGG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| 0 |
DNA sequence
CCTGATTACCCACGACCCTCAGCAACTTCGAAGTATCGCGCGAGTCCAACGAAAACCTTAACCCGCCTGGAGATCGTGCCATGAAAAAGAACCCGATCCA
ATTTCAAAAAGGCTTCAGTCTGACAGATTTCATAAAGCGATACGGTGCTGAAAGCCAGTGCGCCGAAGCGCTATTTCAGGCGCGATGGCCTAGCGGTTTT
CAATGTCCTGACTGCGGCGGTCGTCATTACAGCGCAATCAAAACACGCCGCTTATATCAGTGCACGGCTTGTCATCACCAAACCTCGCTGATCAGCGGGA
CGCTGTTTGAACAAACCAAGCTGCCGCTCACCGTGTGGTTTCTGGCGATCCACCTGCTCACGCAGGCCAAAACGGCTTTGTCGGCCTTGGCATTGATGCG
GCAAATCGGCGTGTCTTACAACACCGCCTGGAGCGTCAAGCACAAGATCATGCAGGCGATGAAAGAGCGGGATGACCGCAAGCCGCTGACCGGCATCATT
CAACTCGATGACGTTTACTGGGGCGGCGAGCATCGCGGCGGCAAACGCGGGCGAGGCTCCCAAAATAAGACCCCTTTTGTGGCGGCGGTGGCGCTCAACG
AAGCGCATCAGCCCATTGCCATGAACTTAAACGTTGTCAAAGGCTTCCGAACCACCGAAATCAAACGTTGGGCCGGTAAACATCTTGAGCCGGGTAGCCT
GGTATATTCCGACGGTCTGGCCTGTTTTTCCGCCGTGCTCGATCATGGCTGTCACCACTATTCCATCGTCACCGGCGGCGGCCCAGACAGCGTAACCAAA
GAAGAATTCACCTGGGTCAATACCATGATCGGCAACATAAAGCGCTCAATCAACGGTACTTACCACGCCATCAATCCCAAACATTTGCCGCGTTATCTGG
CCGAGTTTTGTTATCGCTTTAACCGCCGATTCGATTTGCAAGCCATGATGCCCCGGTTTCTAGTCGCGGCGGCAAATACGCCGCCCATGCCGGGGCGATT
GCTCAAATTGGCTGAGGCTTATGGGTAATCAGG
ATTTCAAAAAGGCTTCAGTCTGACAGATTTCATAAAGCGATACGGTGCTGAAAGCCAGTGCGCCGAAGCGCTATTTCAGGCGCGATGGCCTAGCGGTTTT
CAATGTCCTGACTGCGGCGGTCGTCATTACAGCGCAATCAAAACACGCCGCTTATATCAGTGCACGGCTTGTCATCACCAAACCTCGCTGATCAGCGGGA
CGCTGTTTGAACAAACCAAGCTGCCGCTCACCGTGTGGTTTCTGGCGATCCACCTGCTCACGCAGGCCAAAACGGCTTTGTCGGCCTTGGCATTGATGCG
GCAAATCGGCGTGTCTTACAACACCGCCTGGAGCGTCAAGCACAAGATCATGCAGGCGATGAAAGAGCGGGATGACCGCAAGCCGCTGACCGGCATCATT
CAACTCGATGACGTTTACTGGGGCGGCGAGCATCGCGGCGGCAAACGCGGGCGAGGCTCCCAAAATAAGACCCCTTTTGTGGCGGCGGTGGCGCTCAACG
AAGCGCATCAGCCCATTGCCATGAACTTAAACGTTGTCAAAGGCTTCCGAACCACCGAAATCAAACGTTGGGCCGGTAAACATCTTGAGCCGGGTAGCCT
GGTATATTCCGACGGTCTGGCCTGTTTTTCCGCCGTGCTCGATCATGGCTGTCACCACTATTCCATCGTCACCGGCGGCGGCCCAGACAGCGTAACCAAA
GAAGAATTCACCTGGGTCAATACCATGATCGGCAACATAAAGCGCTCAATCAACGGTACTTACCACGCCATCAATCCCAAACATTTGCCGCGTTATCTGG
CCGAGTTTTGTTATCGCTTTAACCGCCGATTCGATTTGCAAGCCATGATGCCCCGGTTTCTAGTCGCGGCGGCAAATACGCCGCCCATGCCGGGGCGATT
GCTCAAATTGGCTGAGGCTTATGGGTAATCAGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 948 bp | 315 aa | 81 | 1028 | + | No |
Chemistry : DDE
ORF sequence :
MKKNPIQFQKGFSLTDFIKRYGAESQCAEALFQARWPSGFQCPDCGGRHYSAIKTRRLYQCTACHHQTSLISGTLFEQTKLPLTVWFLAIHLLTQAKTAL
SALALMRQIGVSYNTAWSVKHKIMQAMKERDDRKPLTGIIQLDDVYWGGEHRGGKRGRGSQNKTPFVAAVALNEAHQPIAMNLNVVKGFRTTEIKRWAGK
HLEPGSLVYSDGLACFSAVLDHGCHHYSIVTGGGPDSVTKEEFTWVNTMIGNIKRSINGTYHAINPKHLPRYLAEFCYRFNRRFDLQAMMPRFLVAAANT
PPMPGRLLKLAEAYG*
SALALMRQIGVSYNTAWSVKHKIMQAMKERDDRKPLTGIIQLDDVYWGGEHRGGKRGRGSQNKTPFVAAVALNEAHQPIAMNLNVVKGFRTTEIKRWAGK
HLEPGSLVYSDGLACFSAVLDHGCHHYSIVTGGGPDSVTKEEFTWVNTMIGNIKRSINGTYHAINPKHLPRYLAEFCYRFNRRFDLQAMMPRFLVAAANT
PPMPGRLLKLAEAYG*
Blast result :
Comments
ISMmet1 is 77% aa similar to ISSbe1.
References
1] Thomas Jové (2016) Direct submission.
2] Heylen,K., De Vos,P. and Vekeman,B. (2016) Direct GenBank submission.
2] Heylen,K., De Vos,P. and Vekeman,B. (2016) Direct GenBank submission.