ISMko1
- Family IS1595
- Group IS1595
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| LUUJ01000014 | ND | Methylomonas koyamae | Methylomonas koyamae R-45378 |
DNA section
IS Length : 1045 bp
Ends
IR Length : 24/26
IRL : cttgattagcaatcattttccgctaatccccaaaaagcttggcaaacagg
IRR : cctgaTTAGCAATGATTTTCCGCTAACCGCAGCCAAGCTTCTGAGCGAGG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|
DNA sequence
CTTGATTAGCAATCATTTTCCGCTAATCCCCAAAAAGCTTGGCAAACAGGCGTACACTCAACAGAAAAGTTACCTGGGGGTGTGTCATGTCGATGAATCG
TGTGCAATTCCAACCGGGGCTGTCGATGCCTGAATTTATGCAGCAGTTTGGCACCGAGGCCCAATGCGAAACGGCGCTGATTCAAGCGCGTTGGCCACAA
GGCTTTCGCTGTCCGAAGTGCGATCACGATGAACATTGCGTCTTGGCTCGTAAAGGCCGCAAAACCTTTCAATGCAACGCGTGCCATCACCAGACCTCGA
TTATTGCGGGAACCGTTTTTCAGGGCAGTAACTTGCCGTTGACGATTTGGTTTCTGGGTATCCATTTGATCAGCCAAGCCAAAACCGGGTTATCGGCCCT
GGCACTGAAACGTCAGCTCGGCATCAGCTATCCCAGCGCCTGGCTGATGCACCACAAATTGATGCAAGCCATGGCCGAACGCGAAGCCGGCTACTGTTTA
TCGGGTTCAGTGCAAATCGATGATGCTTATTTGGGTGGGGAACATAGCGGCGGCAAGGTTGGCCGTGGATCAGAAAACAAAATCCCTTTCGTTGCGGCTG
TTTCTCTGGATGGTGCGGGCCATCCCAATCGCGTCAAGCTGACACCGGTCAGCGGATTTACCACCGAAGCGATAGCTGCCTGGGCGCAAAGTCATCTTGA
AGCCGATTGTCGTGTGACGTCCGATGGTCTGGCTTGTTTTGCCGGCGTCACGGCCGCCGGTTGTCAGCACAATCCCGTTGTCGCCGGTGGTCGTAAACCC
AATGAATTGCCTGAATTTCGCTGGGTCAACACGGTACTGGGCAATGTCAAAACCAGCCTGAGCGGCGTGTATCATGCCTTTGACTTCAGCAAATACGCTT
ACCGTTATCTCGCGGCGATCGCCTATCGGTTTAATCGCCGATTCCACCTCAGTACCTTACCTCAGCGTTTATTGGTAGCTGCTGTTACTATTGGACCTCG
CTCAGAAGCTTGGCTGCGGTTAGCGGAAAATCATTGCTAATCAGG
TGTGCAATTCCAACCGGGGCTGTCGATGCCTGAATTTATGCAGCAGTTTGGCACCGAGGCCCAATGCGAAACGGCGCTGATTCAAGCGCGTTGGCCACAA
GGCTTTCGCTGTCCGAAGTGCGATCACGATGAACATTGCGTCTTGGCTCGTAAAGGCCGCAAAACCTTTCAATGCAACGCGTGCCATCACCAGACCTCGA
TTATTGCGGGAACCGTTTTTCAGGGCAGTAACTTGCCGTTGACGATTTGGTTTCTGGGTATCCATTTGATCAGCCAAGCCAAAACCGGGTTATCGGCCCT
GGCACTGAAACGTCAGCTCGGCATCAGCTATCCCAGCGCCTGGCTGATGCACCACAAATTGATGCAAGCCATGGCCGAACGCGAAGCCGGCTACTGTTTA
TCGGGTTCAGTGCAAATCGATGATGCTTATTTGGGTGGGGAACATAGCGGCGGCAAGGTTGGCCGTGGATCAGAAAACAAAATCCCTTTCGTTGCGGCTG
TTTCTCTGGATGGTGCGGGCCATCCCAATCGCGTCAAGCTGACACCGGTCAGCGGATTTACCACCGAAGCGATAGCTGCCTGGGCGCAAAGTCATCTTGA
AGCCGATTGTCGTGTGACGTCCGATGGTCTGGCTTGTTTTGCCGGCGTCACGGCCGCCGGTTGTCAGCACAATCCCGTTGTCGCCGGTGGTCGTAAACCC
AATGAATTGCCTGAATTTCGCTGGGTCAACACGGTACTGGGCAATGTCAAAACCAGCCTGAGCGGCGTGTATCATGCCTTTGACTTCAGCAAATACGCTT
ACCGTTATCTCGCGGCGATCGCCTATCGGTTTAATCGCCGATTCCACCTCAGTACCTTACCTCAGCGTTTATTGGTAGCTGCTGTTACTATTGGACCTCG
CTCAGAAGCTTGGCTGCGGTTAGCGGAAAATCATTGCTAATCAGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 954 bp | 317 aa | 87 | 1040 | + | No |
Chemistry : DDE
ORF sequence :
MSMNRVQFQPGLSMPEFMQQFGTEAQCETALIQARWPQGFRCPKCDHDEHCVLARKGRKTFQCNACHHQTSIIAGTVFQGSNLPLTIWFLGIHLISQAKT
GLSALALKRQLGISYPSAWLMHHKLMQAMAEREAGYCLSGSVQIDDAYLGGEHSGGKVGRGSENKIPFVAAVSLDGAGHPNRVKLTPVSGFTTEAIAAWA
QSHLEADCRVTSDGLACFAGVTAAGCQHNPVVAGGRKPNELPEFRWVNTVLGNVKTSLSGVYHAFDFSKYAYRYLAAIAYRFNRRFHLSTLPQRLLVAAV
TIGPRSEAWLRLAENHC
GLSALALKRQLGISYPSAWLMHHKLMQAMAEREAGYCLSGSVQIDDAYLGGEHSGGKVGRGSENKIPFVAAVSLDGAGHPNRVKLTPVSGFTTEAIAAWA
QSHLEADCRVTSDGLACFAGVTAAGCQHNPVVAGGRKPNELPEFRWVNTVLGNVKTSLSGVYHAFDFSKYAYRYLAAIAYRFNRRFHLSTLPQRLLVAAV
TIGPRSEAWLRLAENHC
Blast result :
Comments
ISMko1 is 78% aa similar to ISTni3.
References
1] Thomas Jové (2016) Direct submission.
2] Heylen,K., De Vos,P. and Vekeman,B. (2016) Direct GenBnak submission.
2] Heylen,K., De Vos,P. and Vekeman,B. (2016) Direct GenBnak submission.